Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03035

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03030 and DDA3937_RS03035 are separated by 106 nucleotidesDDA3937_RS03035 and DDA3937_RS03040 are separated by 8 nucleotides DDA3937_RS03030: DDA3937_RS03030 - ATP-dependent zinc metalloprotease FtsH, at 668,359 to 670,311 _RS03030 DDA3937_RS03035: DDA3937_RS03035 - dihydropteroate synthase, at 670,418 to 671,251 _RS03035 DDA3937_RS03040: DDA3937_RS03040 - phosphoglucosamine mutase, at 671,260 to 672,597 _RS03040 Position (kb) 670 671 672Strain fitness (log2 ratio) -3 -2 -1 0 1at 670.264 kb on - strandat 670.309 kb on + strandat 670.309 kb on + strandat 670.315 kb on + strandat 670.316 kb on - strandat 670.316 kb on - strandat 670.372 kb on + strandat 670.921 kb on + strand, within DDA3937_RS03035at 670.922 kb on - strand, within DDA3937_RS03035at 671.173 kb on + strandat 671.174 kb on - strandat 671.214 kb on + strandat 671.214 kb on + strandat 671.214 kb on + strandat 671.220 kb on + strandat 671.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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670,264 - -3.1
670,309 + -2.0
670,309 + -0.1
670,315 + -1.3
670,316 - -1.7
670,316 - -2.1
670,372 + +1.4
670,921 + DDA3937_RS03035 0.60 -1.5
670,922 - DDA3937_RS03035 0.60 -0.1
671,173 + -0.1
671,174 - -2.3
671,214 + +1.5
671,214 + -1.1
671,214 + -0.3
671,220 + -2.1
671,235 + -2.1

Or see this region's nucleotide sequence