Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02830 and DDA3937_RS02835 are separated by 18 nucleotides DDA3937_RS02835 and DDA3937_RS02840 are separated by 130 nucleotides DDA3937_RS02840 and DDA3937_RS02845 are separated by 45 nucleotides
DDA3937_RS02830: DDA3937_RS02830 - tagaturonate reductase, at 623,578 to 625,029
_RS02830
DDA3937_RS02835: DDA3937_RS02835 - altronate dehydratase, at 625,048 to 626,538
_RS02835
DDA3937_RS02840: DDA3937_RS02840 - YgjV family protein, at 626,669 to 627,214
_RS02840
DDA3937_RS02845: DDA3937_RS02845 - TerC family protein, at 627,260 to 628,213
_RS02845
Position (kb) 625
626
627 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 624.049 kb on - strand, within DDA3937_RS02830 at 624.100 kb on + strand, within DDA3937_RS02830 at 624.100 kb on + strand, within DDA3937_RS02830 at 624.101 kb on - strand, within DDA3937_RS02830 at 624.101 kb on - strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830 at 624.305 kb on - strand, within DDA3937_RS02830 at 624.305 kb on - strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.311 kb on - strand, within DDA3937_RS02830 at 624.399 kb on + strand, within DDA3937_RS02830 at 624.399 kb on + strand, within DDA3937_RS02830 at 624.400 kb on - strand, within DDA3937_RS02830 at 624.400 kb on - strand, within DDA3937_RS02830 at 624.400 kb on - strand, within DDA3937_RS02830 at 624.400 kb on - strand, within DDA3937_RS02830 at 624.406 kb on + strand, within DDA3937_RS02830 at 624.406 kb on + strand, within DDA3937_RS02830 at 624.444 kb on + strand, within DDA3937_RS02830 at 624.554 kb on + strand, within DDA3937_RS02830 at 624.709 kb on + strand, within DDA3937_RS02830 at 624.709 kb on + strand, within DDA3937_RS02830 at 624.776 kb on - strand, within DDA3937_RS02830 at 624.776 kb on - strand, within DDA3937_RS02830 at 624.891 kb on - strand at 624.985 kb on - strand at 624.985 kb on - strand at 624.985 kb on - strand at 625.022 kb on - strand at 625.027 kb on + strand at 625.044 kb on - strand at 625.176 kb on + strand at 625.177 kb on - strand at 625.177 kb on - strand at 625.177 kb on - strand at 625.222 kb on + strand, within DDA3937_RS02835 at 625.222 kb on + strand, within DDA3937_RS02835 at 625.222 kb on + strand, within DDA3937_RS02835 at 625.222 kb on + strand, within DDA3937_RS02835 at 625.291 kb on - strand at 625.318 kb on + strand, within DDA3937_RS02835 at 625.319 kb on - strand, within DDA3937_RS02835 at 625.324 kb on + strand, within DDA3937_RS02835 at 625.381 kb on + strand, within DDA3937_RS02835 at 625.381 kb on + strand, within DDA3937_RS02835 at 625.381 kb on + strand, within DDA3937_RS02835 at 625.381 kb on + strand, within DDA3937_RS02835 at 625.382 kb on - strand, within DDA3937_RS02835 at 625.382 kb on - strand, within DDA3937_RS02835 at 625.523 kb on - strand, within DDA3937_RS02835 at 625.774 kb on + strand, within DDA3937_RS02835 at 625.775 kb on - strand, within DDA3937_RS02835 at 625.775 kb on - strand, within DDA3937_RS02835 at 625.903 kb on + strand, within DDA3937_RS02835 at 625.903 kb on + strand at 625.904 kb on - strand, within DDA3937_RS02835 at 625.904 kb on - strand, within DDA3937_RS02835 at 625.904 kb on - strand, within DDA3937_RS02835 at 626.019 kb on + strand, within DDA3937_RS02835 at 626.020 kb on - strand, within DDA3937_RS02835 at 626.020 kb on - strand, within DDA3937_RS02835 at 626.041 kb on + strand, within DDA3937_RS02835 at 626.042 kb on - strand, within DDA3937_RS02835 at 626.055 kb on + strand, within DDA3937_RS02835 at 626.055 kb on + strand, within DDA3937_RS02835 at 626.055 kb on + strand, within DDA3937_RS02835 at 626.136 kb on + strand, within DDA3937_RS02835 at 626.179 kb on + strand, within DDA3937_RS02835 at 626.179 kb on + strand, within DDA3937_RS02835 at 626.469 kb on + strand at 626.469 kb on + strand at 626.469 kb on + strand at 626.513 kb on + strand at 626.518 kb on - strand at 626.518 kb on - strand at 626.518 kb on - strand at 626.518 kb on - strand at 626.536 kb on + strand at 626.536 kb on + strand at 626.537 kb on - strand at 626.548 kb on + strand at 626.548 kb on + strand at 626.549 kb on - strand at 626.549 kb on - strand at 626.549 kb on - strand at 626.552 kb on - strand at 626.552 kb on - strand at 626.582 kb on - strand at 626.644 kb on + strand at 626.656 kb on + strand at 626.656 kb on + strand at 626.657 kb on - strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.703 kb on + strand at 626.858 kb on - strand, within DDA3937_RS02840 at 626.858 kb on - strand, within DDA3937_RS02840 at 626.905 kb on + strand, within DDA3937_RS02840 at 626.906 kb on - strand, within DDA3937_RS02840 at 626.906 kb on - strand, within DDA3937_RS02840 at 626.906 kb on - strand, within DDA3937_RS02840 at 626.906 kb on - strand at 626.979 kb on + strand, within DDA3937_RS02840 at 626.979 kb on + strand, within DDA3937_RS02840 at 626.979 kb on + strand, within DDA3937_RS02840 at 626.980 kb on - strand, within DDA3937_RS02840 at 626.980 kb on - strand, within DDA3937_RS02840 at 627.031 kb on + strand, within DDA3937_RS02840 at 627.060 kb on + strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.128 kb on + strand, within DDA3937_RS02840 at 627.128 kb on + strand, within DDA3937_RS02840 at 627.129 kb on - strand, within DDA3937_RS02840 at 627.151 kb on + strand, within DDA3937_RS02840 at 627.414 kb on + strand, within DDA3937_RS02845 at 627.415 kb on - strand, within DDA3937_RS02845 at 627.459 kb on + strand, within DDA3937_RS02845 at 627.459 kb on + strand, within DDA3937_RS02845 at 627.460 kb on - strand, within DDA3937_RS02845 at 627.460 kb on - strand, within DDA3937_RS02845 at 627.460 kb on - strand, within DDA3937_RS02845
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 624,049 - DDA3937_RS02830 0.32 -2.1 624,100 + DDA3937_RS02830 0.36 -0.5 624,100 + DDA3937_RS02830 0.36 -1.3 624,101 - DDA3937_RS02830 0.36 -2.7 624,101 - DDA3937_RS02830 0.36 -0.5 624,192 + DDA3937_RS02830 0.42 -0.1 624,192 + DDA3937_RS02830 0.42 -2.4 624,192 + DDA3937_RS02830 0.42 +2.2 624,192 + DDA3937_RS02830 0.42 +0.3 624,192 + DDA3937_RS02830 0.42 -0.8 624,192 + DDA3937_RS02830 0.42 +0.1 624,193 - DDA3937_RS02830 0.42 -1.9 624,193 - DDA3937_RS02830 0.42 -2.9 624,193 - DDA3937_RS02830 0.42 +0.2 624,305 - DDA3937_RS02830 0.50 +0.3 624,305 - DDA3937_RS02830 0.50 -2.8 624,310 + DDA3937_RS02830 0.50 +1.1 624,310 + DDA3937_RS02830 0.50 -0.8 624,310 + DDA3937_RS02830 0.50 +0.5 624,310 + DDA3937_RS02830 0.50 -2.1 624,310 + DDA3937_RS02830 0.50 -0.4 624,310 + DDA3937_RS02830 0.50 +0.7 624,311 - DDA3937_RS02830 0.50 -2.7 624,399 + DDA3937_RS02830 0.57 +0.3 624,399 + DDA3937_RS02830 0.57 -0.3 624,400 - DDA3937_RS02830 0.57 -1.1 624,400 - DDA3937_RS02830 0.57 -2.7 624,400 - DDA3937_RS02830 0.57 -1.9 624,400 - DDA3937_RS02830 0.57 +0.1 624,406 + DDA3937_RS02830 0.57 -4.2 624,406 + DDA3937_RS02830 0.57 -0.8 624,444 + DDA3937_RS02830 0.60 +1.8 624,554 + DDA3937_RS02830 0.67 -2.5 624,709 + DDA3937_RS02830 0.78 -1.3 624,709 + DDA3937_RS02830 0.78 -3.0 624,776 - DDA3937_RS02830 0.83 +1.3 624,776 - DDA3937_RS02830 0.83 -0.8 624,891 - -1.3 624,985 - +1.1 624,985 - -2.1 624,985 - +0.2 625,022 - -0.8 625,027 + -0.1 625,044 - +0.1 625,176 + -2.5 625,177 - +1.0 625,177 - -3.4 625,177 - +0.1 625,222 + DDA3937_RS02835 0.12 -0.8 625,222 + DDA3937_RS02835 0.12 +1.3 625,222 + DDA3937_RS02835 0.12 -1.5 625,222 + DDA3937_RS02835 0.12 -1.6 625,291 - +0.5 625,318 + DDA3937_RS02835 0.18 -1.7 625,319 - DDA3937_RS02835 0.18 -0.8 625,324 + DDA3937_RS02835 0.19 +0.5 625,381 + DDA3937_RS02835 0.22 -0.2 625,381 + DDA3937_RS02835 0.22 +1.1 625,381 + DDA3937_RS02835 0.22 -1.9 625,381 + DDA3937_RS02835 0.22 -0.5 625,382 - DDA3937_RS02835 0.22 +1.5 625,382 - DDA3937_RS02835 0.22 +0.8 625,523 - DDA3937_RS02835 0.32 +0.4 625,774 + DDA3937_RS02835 0.49 +0.4 625,775 - DDA3937_RS02835 0.49 -0.8 625,775 - DDA3937_RS02835 0.49 -0.8 625,903 + DDA3937_RS02835 0.57 +0.8 625,903 + -0.1 625,904 - DDA3937_RS02835 0.57 +0.7 625,904 - DDA3937_RS02835 0.57 -1.9 625,904 - DDA3937_RS02835 0.57 -1.7 626,019 + DDA3937_RS02835 0.65 -0.9 626,020 - DDA3937_RS02835 0.65 +0.2 626,020 - DDA3937_RS02835 0.65 -0.7 626,041 + DDA3937_RS02835 0.67 +1.3 626,042 - DDA3937_RS02835 0.67 -1.3 626,055 + DDA3937_RS02835 0.68 +0.1 626,055 + DDA3937_RS02835 0.68 -2.9 626,055 + DDA3937_RS02835 0.68 +0.5 626,136 + DDA3937_RS02835 0.73 -0.3 626,179 + DDA3937_RS02835 0.76 +0.0 626,179 + DDA3937_RS02835 0.76 +0.8 626,469 + +3.0 626,469 + +1.9 626,469 + -3.7 626,513 + +0.9 626,518 - +0.3 626,518 - -1.1 626,518 - -2.9 626,518 - -1.1 626,536 + +1.7 626,536 + +0.9 626,537 - -1.3 626,548 + +2.5 626,548 + +0.3 626,549 - +0.1 626,549 - -0.2 626,549 - -0.3 626,552 - -1.3 626,552 - -1.3 626,582 - -1.1 626,644 + +0.5 626,656 + -2.1 626,656 + +0.9 626,657 - -2.4 626,678 + +1.9 626,678 + -0.3 626,678 + -0.7 626,678 + -1.9 626,678 + +1.2 626,678 + -0.1 626,678 + -0.1 626,679 - -0.5 626,679 - +1.3 626,679 - -1.7 626,679 - +1.5 626,679 - -0.8 626,679 - +1.3 626,703 + +0.5 626,858 - DDA3937_RS02840 0.35 -1.8 626,858 - DDA3937_RS02840 0.35 +0.4 626,905 + DDA3937_RS02840 0.43 +0.9 626,906 - DDA3937_RS02840 0.43 -1.7 626,906 - DDA3937_RS02840 0.43 +1.3 626,906 - DDA3937_RS02840 0.43 -0.2 626,906 - +5.3 626,979 + DDA3937_RS02840 0.57 -1.5 626,979 + DDA3937_RS02840 0.57 -1.3 626,979 + DDA3937_RS02840 0.57 +0.2 626,980 - DDA3937_RS02840 0.57 -0.2 626,980 - DDA3937_RS02840 0.57 -0.2 627,031 + DDA3937_RS02840 0.66 -2.7 627,060 + DDA3937_RS02840 0.72 -2.3 627,061 - DDA3937_RS02840 0.72 +0.7 627,061 - DDA3937_RS02840 0.72 -2.3 627,061 - DDA3937_RS02840 0.72 -1.8 627,061 - DDA3937_RS02840 0.72 -2.9 627,061 - DDA3937_RS02840 0.72 -2.9 627,061 - DDA3937_RS02840 0.72 -1.7 627,064 + DDA3937_RS02840 0.72 -2.9 627,064 + DDA3937_RS02840 0.72 -0.8 627,064 + DDA3937_RS02840 0.72 -1.3 627,064 + DDA3937_RS02840 0.72 -2.7 627,064 + DDA3937_RS02840 0.72 +1.4 627,064 + DDA3937_RS02840 0.72 -1.7 627,064 + DDA3937_RS02840 0.72 -1.7 627,064 + DDA3937_RS02840 0.72 -1.2 627,064 + DDA3937_RS02840 0.72 +0.2 627,064 + DDA3937_RS02840 0.72 +1.5 627,064 + DDA3937_RS02840 0.72 +1.6 627,064 + DDA3937_RS02840 0.72 +0.6 627,064 + DDA3937_RS02840 0.72 -2.5 627,065 - DDA3937_RS02840 0.73 +2.1 627,065 - DDA3937_RS02840 0.73 -4.6 627,065 - DDA3937_RS02840 0.73 -1.1 627,065 - DDA3937_RS02840 0.73 -1.3 627,065 - DDA3937_RS02840 0.73 -1.9 627,065 - DDA3937_RS02840 0.73 -1.8 627,065 - DDA3937_RS02840 0.73 -1.6 627,065 - DDA3937_RS02840 0.73 -2.7 627,065 - DDA3937_RS02840 0.73 -1.8 627,065 - DDA3937_RS02840 0.73 -1.9 627,065 - DDA3937_RS02840 0.73 +0.9 627,065 - +1.1 627,065 - DDA3937_RS02840 0.73 +0.0 627,065 - DDA3937_RS02840 0.73 -0.7 627,065 - DDA3937_RS02840 0.73 -1.2 627,128 + DDA3937_RS02840 0.84 -0.5 627,128 + DDA3937_RS02840 0.84 +0.7 627,129 - DDA3937_RS02840 0.84 -2.5 627,151 + DDA3937_RS02840 0.88 -0.3 627,414 + DDA3937_RS02845 0.16 -0.2 627,415 - DDA3937_RS02845 0.16 -1.5 627,459 + DDA3937_RS02845 0.21 -0.6 627,459 + DDA3937_RS02845 0.21 +2.1 627,460 - DDA3937_RS02845 0.21 +1.0 627,460 - DDA3937_RS02845 0.21 -2.9 627,460 - DDA3937_RS02845 0.21 -1.6
Or see this region's nucleotide sequence