Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02690 and DDA3937_RS02695 are separated by 161 nucleotides DDA3937_RS02695 and DDA3937_RS02700 are separated by 162 nucleotides DDA3937_RS02700 and DDA3937_RS02705 are separated by 92 nucleotides
DDA3937_RS02690: DDA3937_RS02690 - integrase arm-type DNA-binding domain-containing protein, at 595,102 to 596,361
_RS02690
DDA3937_RS02695: DDA3937_RS02695 - tRNA-Phe, at 596,523 to 596,598
_RS02695
DDA3937_RS02700: DDA3937_RS02700 - transcriptional regulator, at 596,761 to 597,336
_RS02700
DDA3937_RS02705: DDA3937_RS02705 - protein-disulfide reductase DsbD, at 597,429 to 599,147
_RS02705
Position (kb) 596
597 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 595.596 kb on + strand, within DDA3937_RS02690 at 595.596 kb on + strand, within DDA3937_RS02690 at 595.706 kb on + strand, within DDA3937_RS02690 at 595.706 kb on + strand, within DDA3937_RS02690 at 595.707 kb on - strand, within DDA3937_RS02690 at 595.812 kb on + strand, within DDA3937_RS02690 at 595.814 kb on + strand, within DDA3937_RS02690 at 595.814 kb on + strand, within DDA3937_RS02690 at 595.815 kb on - strand, within DDA3937_RS02690 at 595.835 kb on - strand, within DDA3937_RS02690 at 595.908 kb on + strand, within DDA3937_RS02690 at 595.909 kb on - strand at 595.909 kb on - strand, within DDA3937_RS02690 at 595.909 kb on - strand, within DDA3937_RS02690 at 595.983 kb on - strand, within DDA3937_RS02690 at 596.143 kb on + strand, within DDA3937_RS02690 at 596.144 kb on - strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.149 kb on - strand, within DDA3937_RS02690 at 596.149 kb on - strand, within DDA3937_RS02690 at 596.149 kb on - strand, within DDA3937_RS02690 at 596.149 kb on - strand, within DDA3937_RS02690 at 596.249 kb on + strand at 596.249 kb on + strand at 596.250 kb on - strand at 596.254 kb on + strand at 596.254 kb on + strand at 596.254 kb on + strand at 596.254 kb on + strand at 596.254 kb on + strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.259 kb on + strand at 596.260 kb on - strand at 596.285 kb on + strand at 596.310 kb on + strand at 596.311 kb on - strand at 596.357 kb on - strand at 596.357 kb on - strand at 596.361 kb on + strand at 596.361 kb on + strand at 596.361 kb on + strand at 596.361 kb on + strand at 596.362 kb on - strand at 596.362 kb on - strand at 596.362 kb on - strand at 596.362 kb on - strand at 596.362 kb on - strand at 596.487 kb on + strand at 596.489 kb on + strand at 596.509 kb on + strand at 596.510 kb on - strand at 596.510 kb on - strand at 596.611 kb on + strand at 596.611 kb on + strand at 596.703 kb on + strand at 596.704 kb on - strand at 596.704 kb on - strand at 596.715 kb on + strand at 596.715 kb on + strand at 596.715 kb on + strand at 596.716 kb on - strand at 596.716 kb on - strand at 596.855 kb on - strand, within DDA3937_RS02700 at 596.899 kb on + strand, within DDA3937_RS02700 at 596.900 kb on - strand, within DDA3937_RS02700 at 596.954 kb on + strand, within DDA3937_RS02700 at 596.954 kb on + strand, within DDA3937_RS02700 at 596.955 kb on - strand, within DDA3937_RS02700 at 596.960 kb on + strand, within DDA3937_RS02700 at 596.961 kb on - strand, within DDA3937_RS02700 at 597.041 kb on - strand, within DDA3937_RS02700 at 597.041 kb on - strand, within DDA3937_RS02700 at 597.041 kb on - strand, within DDA3937_RS02700 at 597.041 kb on - strand, within DDA3937_RS02700 at 597.144 kb on + strand, within DDA3937_RS02700 at 597.144 kb on + strand, within DDA3937_RS02700 at 597.145 kb on - strand, within DDA3937_RS02700 at 597.153 kb on + strand, within DDA3937_RS02700 at 597.153 kb on + strand, within DDA3937_RS02700 at 597.154 kb on - strand, within DDA3937_RS02700 at 597.154 kb on - strand, within DDA3937_RS02700 at 597.188 kb on + strand, within DDA3937_RS02700 at 597.188 kb on + strand, within DDA3937_RS02700 at 597.189 kb on - strand, within DDA3937_RS02700 at 597.189 kb on - strand, within DDA3937_RS02700 at 597.353 kb on - strand at 597.380 kb on - strand at 597.401 kb on + strand at 597.402 kb on - strand at 597.427 kb on + strand at 597.447 kb on + strand at 597.447 kb on + strand at 597.447 kb on + strand at 597.447 kb on + strand at 597.447 kb on + strand at 597.447 kb on + strand at 597.448 kb on - strand at 597.448 kb on - strand at 597.448 kb on - strand at 597.533 kb on + strand at 597.533 kb on + strand at 597.533 kb on + strand at 597.534 kb on - strand at 597.534 kb on - strand at 597.540 kb on + strand at 597.555 kb on + strand at 597.555 kb on + strand at 597.555 kb on + strand at 597.555 kb on + strand at 597.556 kb on - strand at 597.556 kb on - strand at 597.556 kb on - strand at 597.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 595,596 + DDA3937_RS02690 0.39 +3.5 595,596 + DDA3937_RS02690 0.39 -1.3 595,706 + DDA3937_RS02690 0.48 -1.6 595,706 + DDA3937_RS02690 0.48 +0.4 595,707 - DDA3937_RS02690 0.48 -1.6 595,812 + DDA3937_RS02690 0.56 +1.6 595,814 + DDA3937_RS02690 0.57 +0.3 595,814 + DDA3937_RS02690 0.57 +1.6 595,815 - DDA3937_RS02690 0.57 +0.7 595,835 - DDA3937_RS02690 0.58 +0.1 595,908 + DDA3937_RS02690 0.64 +3.0 595,909 - +0.5 595,909 - DDA3937_RS02690 0.64 -1.7 595,909 - DDA3937_RS02690 0.64 +0.9 595,983 - DDA3937_RS02690 0.70 +1.6 596,143 + DDA3937_RS02690 0.83 +0.0 596,144 - DDA3937_RS02690 0.83 +0.9 596,148 + DDA3937_RS02690 0.83 +0.8 596,148 + DDA3937_RS02690 0.83 +0.5 596,148 + DDA3937_RS02690 0.83 -0.8 596,148 + DDA3937_RS02690 0.83 +1.0 596,148 + DDA3937_RS02690 0.83 -2.2 596,148 + DDA3937_RS02690 0.83 -0.8 596,148 + DDA3937_RS02690 0.83 -0.1 596,149 - DDA3937_RS02690 0.83 -2.8 596,149 - DDA3937_RS02690 0.83 -0.5 596,149 - DDA3937_RS02690 0.83 -3.6 596,149 - DDA3937_RS02690 0.83 -1.3 596,249 + +0.5 596,249 + +0.7 596,250 - -1.6 596,254 + +0.8 596,254 + -0.8 596,254 + -1.1 596,254 + -1.6 596,254 + +0.1 596,255 - +0.0 596,255 - -3.0 596,255 - -1.3 596,255 - -0.1 596,255 - +1.4 596,255 - -2.8 596,259 + +0.1 596,260 - -0.2 596,285 + -1.5 596,310 + -1.6 596,311 - -1.1 596,357 - +1.9 596,357 - +1.2 596,361 + +0.2 596,361 + -0.7 596,361 + -0.5 596,361 + +0.9 596,362 - -2.6 596,362 - +0.1 596,362 - -1.0 596,362 - -4.7 596,362 - +2.3 596,487 + -1.5 596,489 + +0.8 596,509 + -2.3 596,510 - -2.5 596,510 - -0.1 596,611 + +0.6 596,611 + +0.3 596,703 + +0.9 596,704 - -3.0 596,704 - -1.4 596,715 + -0.8 596,715 + -2.0 596,715 + -1.1 596,716 - -2.2 596,716 - +1.7 596,855 - DDA3937_RS02700 0.16 +1.1 596,899 + DDA3937_RS02700 0.24 -0.3 596,900 - DDA3937_RS02700 0.24 +0.7 596,954 + DDA3937_RS02700 0.34 -0.5 596,954 + DDA3937_RS02700 0.34 +3.6 596,955 - DDA3937_RS02700 0.34 -1.1 596,960 + DDA3937_RS02700 0.35 -0.5 596,961 - DDA3937_RS02700 0.35 +0.4 597,041 - DDA3937_RS02700 0.49 -0.5 597,041 - DDA3937_RS02700 0.49 +0.8 597,041 - DDA3937_RS02700 0.49 -4.8 597,041 - DDA3937_RS02700 0.49 -2.3 597,144 + DDA3937_RS02700 0.66 -0.4 597,144 + DDA3937_RS02700 0.66 -2.2 597,145 - DDA3937_RS02700 0.67 -1.9 597,153 + DDA3937_RS02700 0.68 +0.7 597,153 + DDA3937_RS02700 0.68 -1.9 597,154 - DDA3937_RS02700 0.68 -1.0 597,154 - DDA3937_RS02700 0.68 -0.5 597,188 + DDA3937_RS02700 0.74 -0.6 597,188 + DDA3937_RS02700 0.74 -1.1 597,189 - DDA3937_RS02700 0.74 +0.1 597,189 - DDA3937_RS02700 0.74 +1.3 597,353 - +0.1 597,380 - -0.6 597,401 + -1.5 597,402 - -0.8 597,427 + +0.6 597,447 + -0.6 597,447 + -0.8 597,447 + +0.7 597,447 + -1.9 597,447 + -1.7 597,447 + -2.8 597,448 - -3.3 597,448 - -1.9 597,448 - -1.7 597,533 + +2.2 597,533 + -0.8 597,533 + -0.5 597,534 - -1.9 597,534 - +0.0 597,540 + -0.1 597,555 + -1.3 597,555 + -1.1 597,555 + -1.9 597,555 + -0.1 597,556 - -0.1 597,556 - +1.7 597,556 - -0.1 597,556 - -0.7
Or see this region's nucleotide sequence