Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02545 and DDA3937_RS02550 are separated by 0 nucleotides DDA3937_RS02550 and DDA3937_RS02555 are separated by 16 nucleotides DDA3937_RS02555 and DDA3937_RS02560 are separated by 280 nucleotides
DDA3937_RS02545: DDA3937_RS02545 - heavy metal translocating P-type ATPase, at 561,977 to 564,415
_RS02545
DDA3937_RS02550: DDA3937_RS02550 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 564,416 to 564,847
_RS02550
DDA3937_RS02555: DDA3937_RS02555 - LacI family DNA-binding transcriptional regulator, at 564,864 to 565,886
_RS02555
DDA3937_RS02560: DDA3937_RS02560 - L-talarate/galactarate dehydratase, at 566,167 to 567,366
_RS02560
Position (kb) 564
565
566 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.894 kb on - strand, within DDA3937_RS02545 at 564.104 kb on - strand, within DDA3937_RS02545 at 564.104 kb on - strand, within DDA3937_RS02545 at 564.374 kb on + strand at 564.375 kb on - strand at 564.375 kb on - strand at 564.378 kb on - strand at 564.388 kb on + strand at 564.389 kb on - strand at 564.489 kb on + strand, within DDA3937_RS02550 at 564.489 kb on + strand, within DDA3937_RS02550 at 564.522 kb on - strand, within DDA3937_RS02550 at 564.522 kb on - strand, within DDA3937_RS02550 at 564.530 kb on + strand, within DDA3937_RS02550 at 564.530 kb on + strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.533 kb on + strand, within DDA3937_RS02550 at 564.533 kb on + strand, within DDA3937_RS02550 at 564.534 kb on - strand, within DDA3937_RS02550 at 564.568 kb on + strand, within DDA3937_RS02550 at 564.569 kb on - strand, within DDA3937_RS02550 at 564.569 kb on - strand, within DDA3937_RS02550 at 564.832 kb on + strand at 564.885 kb on - strand at 564.923 kb on + strand at 564.923 kb on + strand at 564.948 kb on + strand at 564.949 kb on - strand at 565.168 kb on - strand, within DDA3937_RS02555 at 565.168 kb on - strand, within DDA3937_RS02555 at 565.334 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.455 kb on - strand, within DDA3937_RS02555 at 565.710 kb on - strand, within DDA3937_RS02555 at 565.710 kb on - strand, within DDA3937_RS02555 at 565.711 kb on + strand, within DDA3937_RS02555 at 565.711 kb on + strand, within DDA3937_RS02555 at 565.711 kb on + strand, within DDA3937_RS02555 at 565.712 kb on - strand, within DDA3937_RS02555 at 565.881 kb on - strand at 565.933 kb on + strand at 565.933 kb on + strand at 565.934 kb on - strand at 566.129 kb on - strand at 566.175 kb on - strand at 566.201 kb on - strand at 566.248 kb on - strand at 566.259 kb on + strand at 566.260 kb on - strand at 566.260 kb on - strand at 566.260 kb on - strand at 566.352 kb on + strand, within DDA3937_RS02560 at 566.353 kb on - strand, within DDA3937_RS02560 at 566.404 kb on + strand, within DDA3937_RS02560 at 566.404 kb on + strand, within DDA3937_RS02560 at 566.405 kb on - strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.435 kb on - strand, within DDA3937_RS02560 at 566.435 kb on - strand, within DDA3937_RS02560 at 566.460 kb on + strand, within DDA3937_RS02560 at 566.461 kb on - strand, within DDA3937_RS02560 at 566.501 kb on - strand, within DDA3937_RS02560 at 566.501 kb on - strand, within DDA3937_RS02560 at 566.607 kb on - strand, within DDA3937_RS02560 at 566.627 kb on + strand, within DDA3937_RS02560 at 566.659 kb on + strand, within DDA3937_RS02560 at 566.659 kb on + strand, within DDA3937_RS02560 at 566.659 kb on + strand, within DDA3937_RS02560 at 566.659 kb on + strand, within DDA3937_RS02560 at 566.660 kb on - strand, within DDA3937_RS02560 at 566.660 kb on - strand, within DDA3937_RS02560 at 566.769 kb on + strand, within DDA3937_RS02560
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 563,893 + DDA3937_RS02545 0.79 -1.9 563,893 + DDA3937_RS02545 0.79 -4.1 563,893 + DDA3937_RS02545 0.79 -3.3 563,894 - DDA3937_RS02545 0.79 -1.8 564,104 - DDA3937_RS02545 0.87 -2.5 564,104 - DDA3937_RS02545 0.87 -1.8 564,374 + -2.5 564,375 - +1.5 564,375 - +3.3 564,378 - +2.0 564,388 + +0.1 564,389 - +1.6 564,489 + DDA3937_RS02550 0.17 +0.2 564,489 + DDA3937_RS02550 0.17 -0.5 564,522 - DDA3937_RS02550 0.25 +1.5 564,522 - DDA3937_RS02550 0.25 +1.8 564,530 + DDA3937_RS02550 0.26 -2.5 564,530 + DDA3937_RS02550 0.26 -1.5 564,531 - DDA3937_RS02550 0.27 +0.3 564,531 - DDA3937_RS02550 0.27 -2.8 564,531 - DDA3937_RS02550 0.27 +0.7 564,533 + DDA3937_RS02550 0.27 -3.4 564,533 + DDA3937_RS02550 0.27 -1.7 564,534 - DDA3937_RS02550 0.27 -1.0 564,568 + DDA3937_RS02550 0.35 -3.2 564,569 - DDA3937_RS02550 0.35 -0.5 564,569 - DDA3937_RS02550 0.35 -1.3 564,832 + -0.5 564,885 - -2.0 564,923 + -0.5 564,923 + -0.6 564,948 + -2.7 564,949 - +3.2 565,168 - DDA3937_RS02555 0.30 +0.4 565,168 - DDA3937_RS02555 0.30 +1.1 565,334 + DDA3937_RS02555 0.46 +0.5 565,336 + DDA3937_RS02555 0.46 +0.9 565,336 + DDA3937_RS02555 0.46 -1.9 565,336 + DDA3937_RS02555 0.46 +0.8 565,336 + DDA3937_RS02555 0.46 +1.2 565,336 + DDA3937_RS02555 0.46 -2.0 565,336 + DDA3937_RS02555 0.46 +1.5 565,336 + DDA3937_RS02555 0.46 -2.3 565,336 + +1.5 565,336 + DDA3937_RS02555 0.46 +0.3 565,336 + DDA3937_RS02555 0.46 +0.2 565,336 + DDA3937_RS02555 0.46 -2.0 565,336 + DDA3937_RS02555 0.46 -0.5 565,337 - DDA3937_RS02555 0.46 +0.1 565,337 - DDA3937_RS02555 0.46 -1.3 565,337 - DDA3937_RS02555 0.46 +2.5 565,337 - DDA3937_RS02555 0.46 +0.3 565,337 - DDA3937_RS02555 0.46 -2.2 565,337 - DDA3937_RS02555 0.46 -0.7 565,337 - DDA3937_RS02555 0.46 +1.0 565,337 - DDA3937_RS02555 0.46 -1.3 565,455 - DDA3937_RS02555 0.58 -1.8 565,710 - DDA3937_RS02555 0.83 +1.8 565,710 - DDA3937_RS02555 0.83 -1.5 565,711 + DDA3937_RS02555 0.83 +0.5 565,711 + DDA3937_RS02555 0.83 +0.9 565,711 + DDA3937_RS02555 0.83 +2.4 565,712 - DDA3937_RS02555 0.83 +0.5 565,881 - -2.5 565,933 + -0.5 565,933 + +1.1 565,934 - -0.9 566,129 - +0.0 566,175 - -1.9 566,201 - +0.5 566,248 - +1.9 566,259 + +1.0 566,260 - +0.8 566,260 - -1.0 566,260 - -1.0 566,352 + DDA3937_RS02560 0.15 +0.3 566,353 - DDA3937_RS02560 0.15 +0.3 566,404 + DDA3937_RS02560 0.20 -0.8 566,404 + DDA3937_RS02560 0.20 +1.6 566,405 - DDA3937_RS02560 0.20 -1.3 566,434 + DDA3937_RS02560 0.22 -1.3 566,434 + DDA3937_RS02560 0.22 -0.6 566,434 + DDA3937_RS02560 0.22 -1.5 566,434 + DDA3937_RS02560 0.22 +0.9 566,434 + DDA3937_RS02560 0.22 -0.5 566,434 + DDA3937_RS02560 0.22 +0.7 566,434 + DDA3937_RS02560 0.22 -0.8 566,434 + DDA3937_RS02560 0.22 +1.6 566,435 - DDA3937_RS02560 0.22 -0.2 566,435 - DDA3937_RS02560 0.22 -0.7 566,460 + DDA3937_RS02560 0.24 +0.1 566,461 - DDA3937_RS02560 0.24 -3.3 566,501 - DDA3937_RS02560 0.28 -1.3 566,501 - DDA3937_RS02560 0.28 -3.4 566,607 - DDA3937_RS02560 0.37 +1.3 566,627 + DDA3937_RS02560 0.38 -0.5 566,659 + DDA3937_RS02560 0.41 -1.3 566,659 + DDA3937_RS02560 0.41 +1.3 566,659 + DDA3937_RS02560 0.41 -2.3 566,659 + DDA3937_RS02560 0.41 -0.4 566,660 - DDA3937_RS02560 0.41 -2.5 566,660 - DDA3937_RS02560 0.41 -3.8 566,769 + DDA3937_RS02560 0.50 -1.3
Or see this region's nucleotide sequence