Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02440 and DDA3937_RS02445 are separated by 430 nucleotides DDA3937_RS02445 and DDA3937_RS02450 are separated by 339 nucleotides
DDA3937_RS02440: DDA3937_RS02440 - hypothetical protein, at 539,842 to 540,714
_RS02440
DDA3937_RS02445: DDA3937_RS02445 - peptide chain release factor 3, at 541,145 to 542,734
_RS02445
DDA3937_RS02450: DDA3937_RS02450 - molecular chaperone OsmY, at 543,074 to 543,730
_RS02450
Position (kb) 541
542
543 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 540.161 kb on + strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.270 kb on + strand, within DDA3937_RS02440 at 540.271 kb on - strand, within DDA3937_RS02440 at 540.296 kb on + strand, within DDA3937_RS02440 at 540.297 kb on - strand, within DDA3937_RS02440 at 540.364 kb on - strand, within DDA3937_RS02440 at 540.589 kb on + strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.684 kb on + strand at 540.684 kb on + strand at 540.684 kb on + strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.725 kb on + strand at 540.725 kb on + strand at 540.729 kb on + strand at 540.729 kb on + strand at 540.729 kb on + strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.734 kb on + strand at 540.734 kb on + strand at 540.754 kb on - strand at 540.797 kb on + strand at 540.798 kb on - strand at 540.844 kb on - strand at 540.844 kb on - strand at 540.870 kb on + strand at 540.870 kb on + strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.876 kb on - strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.922 kb on - strand at 540.922 kb on - strand at 540.922 kb on - strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.926 kb on - strand at 540.926 kb on - strand at 540.926 kb on - strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.955 kb on - strand at 540.955 kb on - strand at 540.955 kb on - strand at 540.980 kb on + strand at 540.990 kb on + strand at 540.990 kb on + strand at 541.021 kb on + strand at 541.041 kb on + strand at 541.042 kb on - strand at 541.055 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.127 kb on + strand at 541.199 kb on - strand at 541.443 kb on - strand, within DDA3937_RS02445 at 541.700 kb on + strand, within DDA3937_RS02445 at 541.845 kb on + strand, within DDA3937_RS02445 at 541.939 kb on - strand, within DDA3937_RS02445 at 542.062 kb on + strand, within DDA3937_RS02445 at 542.651 kb on + strand at 542.652 kb on - strand at 542.652 kb on - strand at 542.798 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.896 kb on + strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.899 kb on - strand at 542.899 kb on - strand at 542.899 kb on - strand at 542.902 kb on + strand at 542.930 kb on + strand at 542.935 kb on - strand at 542.941 kb on - strand at 542.941 kb on - strand at 542.941 kb on - strand at 542.945 kb on + strand at 542.946 kb on - strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.961 kb on - strand at 542.961 kb on - strand at 542.961 kb on - strand at 543.069 kb on + strand at 543.221 kb on - strand, within DDA3937_RS02450 at 543.250 kb on + strand, within DDA3937_RS02450 at 543.270 kb on + strand, within DDA3937_RS02450 at 543.271 kb on - strand, within DDA3937_RS02450 at 543.275 kb on + strand, within DDA3937_RS02450 at 543.275 kb on + strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.474 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.597 kb on + strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.733 kb on + strand at 543.733 kb on + strand at 543.733 kb on + strand at 543.734 kb on - strand at 543.734 kb on - strand at 543.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 540,161 + DDA3937_RS02440 0.37 +0.2 540,162 - DDA3937_RS02440 0.37 -1.0 540,162 - DDA3937_RS02440 0.37 +0.5 540,162 - DDA3937_RS02440 0.37 +1.5 540,194 + DDA3937_RS02440 0.40 +1.8 540,194 + DDA3937_RS02440 0.40 +1.2 540,195 - DDA3937_RS02440 0.40 -0.4 540,195 - DDA3937_RS02440 0.40 +0.5 540,209 + DDA3937_RS02440 0.42 +2.7 540,209 + DDA3937_RS02440 0.42 -3.0 540,209 + DDA3937_RS02440 0.42 -2.6 540,209 + DDA3937_RS02440 0.42 -0.3 540,209 + DDA3937_RS02440 0.42 +2.0 540,209 + DDA3937_RS02440 0.42 -0.6 540,209 + DDA3937_RS02440 0.42 +1.6 540,210 - DDA3937_RS02440 0.42 +1.2 540,210 - DDA3937_RS02440 0.42 -0.6 540,210 - DDA3937_RS02440 0.42 -1.0 540,210 - DDA3937_RS02440 0.42 +1.2 540,210 - DDA3937_RS02440 0.42 -1.8 540,210 - DDA3937_RS02440 0.42 +1.0 540,210 - DDA3937_RS02440 0.42 +1.6 540,210 - DDA3937_RS02440 0.42 -2.5 540,210 - DDA3937_RS02440 0.42 +1.1 540,270 + DDA3937_RS02440 0.49 +0.7 540,271 - DDA3937_RS02440 0.49 +1.4 540,296 + DDA3937_RS02440 0.52 -0.8 540,297 - DDA3937_RS02440 0.52 +0.9 540,364 - DDA3937_RS02440 0.60 -0.7 540,589 + DDA3937_RS02440 0.86 +1.3 540,590 - DDA3937_RS02440 0.86 -1.3 540,590 - DDA3937_RS02440 0.86 -1.1 540,590 - DDA3937_RS02440 0.86 -0.8 540,684 + -0.2 540,684 + +4.0 540,684 + -0.2 540,685 - -0.2 540,685 - -2.1 540,685 - +2.5 540,685 - -0.4 540,725 + +0.4 540,725 + +2.1 540,729 + -2.9 540,729 + +0.8 540,729 + -0.2 540,730 - -1.9 540,730 - -1.0 540,730 - -1.1 540,730 - -0.0 540,730 - -2.0 540,730 - -2.1 540,730 - -0.4 540,730 - -2.0 540,730 - +0.5 540,730 - +0.2 540,734 + +1.0 540,734 + -2.3 540,754 - -1.9 540,797 + -4.1 540,798 - -1.5 540,844 - -0.6 540,844 - +2.4 540,870 + +1.1 540,870 + -2.1 540,871 - +1.1 540,871 - +1.0 540,876 - -1.2 540,921 + +2.1 540,921 + -0.8 540,921 + +0.1 540,921 + -0.4 540,921 + +0.7 540,921 + -1.9 540,921 + +2.0 540,921 + -2.9 540,922 - -0.4 540,922 - -0.3 540,922 - -1.4 540,925 + -1.0 540,925 + -1.5 540,925 + -2.2 540,925 + +2.4 540,925 + +0.6 540,925 + -1.4 540,926 - +0.1 540,926 - -0.4 540,926 - -0.8 540,941 + -0.0 540,941 + -0.0 540,941 + +1.2 540,941 + +0.3 540,941 + +0.2 540,941 + +0.2 540,941 + +0.6 540,941 + -0.4 540,942 - -0.4 540,942 - -1.0 540,942 - +1.9 540,942 - +0.9 540,954 + -1.9 540,954 + +0.4 540,954 + +0.4 540,954 + +1.7 540,955 - +0.6 540,955 - -0.7 540,955 - +0.6 540,980 + +1.4 540,990 + -1.2 540,990 + +1.6 541,021 + -0.0 541,041 + +2.0 541,042 - -1.0 541,055 + +0.5 541,120 + +0.6 541,120 + -0.9 541,120 + +3.2 541,120 + +2.3 541,124 + -2.6 541,124 + +0.6 541,124 + +1.6 541,124 + +1.6 541,127 + +1.8 541,199 - -0.0 541,443 - DDA3937_RS02445 0.19 -1.3 541,700 + DDA3937_RS02445 0.35 -2.3 541,845 + DDA3937_RS02445 0.44 +0.1 541,939 - DDA3937_RS02445 0.50 -1.3 542,062 + DDA3937_RS02445 0.58 +0.6 542,651 + -1.8 542,652 - +0.7 542,652 - -1.6 542,798 + -0.0 542,892 + +1.4 542,892 + -1.2 542,892 + +0.6 542,892 + +0.7 542,892 + +0.5 542,892 + -1.4 542,892 + +1.6 542,892 + +0.9 542,892 + +0.6 542,892 + +1.4 542,892 + +0.5 542,892 + +0.0 542,893 - -2.1 542,893 - +0.4 542,893 - +1.5 542,893 - +0.9 542,896 + -3.8 542,897 - +1.6 542,897 - -1.0 542,897 - +1.0 542,897 - -1.9 542,897 - +0.4 542,897 - +2.0 542,898 + +0.8 542,898 + -0.3 542,898 + +4.0 542,899 - +0.7 542,899 - -1.3 542,899 - -1.3 542,902 + -0.2 542,930 + -0.4 542,935 - -2.7 542,941 - -0.0 542,941 - +0.9 542,941 - -1.8 542,945 + -3.6 542,946 - +0.2 542,960 + +0.4 542,960 + -1.4 542,960 + -1.6 542,960 + +0.4 542,961 - -1.4 542,961 - -0.3 542,961 - +0.6 543,069 + -2.8 543,221 - DDA3937_RS02450 0.22 -1.0 543,250 + DDA3937_RS02450 0.27 -1.9 543,270 + DDA3937_RS02450 0.30 +0.6 543,271 - DDA3937_RS02450 0.30 -1.2 543,275 + DDA3937_RS02450 0.31 +3.0 543,275 + DDA3937_RS02450 0.31 +0.2 543,276 - DDA3937_RS02450 0.31 -2.8 543,276 - DDA3937_RS02450 0.31 -2.0 543,276 - DDA3937_RS02450 0.31 -2.2 543,474 + DDA3937_RS02450 0.61 +0.9 543,498 + DDA3937_RS02450 0.65 -2.3 543,498 + DDA3937_RS02450 0.65 -0.6 543,498 + DDA3937_RS02450 0.65 -1.8 543,515 + DDA3937_RS02450 0.67 -0.0 543,515 + DDA3937_RS02450 0.67 -1.2 543,515 + DDA3937_RS02450 0.67 -2.7 543,515 + DDA3937_RS02450 0.67 -1.0 543,516 - DDA3937_RS02450 0.67 -3.6 543,516 - DDA3937_RS02450 0.67 +0.2 543,516 - DDA3937_RS02450 0.67 -0.0 543,516 - DDA3937_RS02450 0.67 +0.5 543,516 - DDA3937_RS02450 0.67 +1.8 543,597 + DDA3937_RS02450 0.80 +0.1 543,598 - DDA3937_RS02450 0.80 +0.9 543,598 - DDA3937_RS02450 0.80 -2.8 543,598 - DDA3937_RS02450 0.80 +2.4 543,733 + -2.7 543,733 + +0.2 543,733 + -3.7 543,734 - -0.4 543,734 - -1.4 543,734 - +0.6
Or see this region's nucleotide sequence