Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01885 and DDA3937_RS01890 are separated by 88 nucleotides DDA3937_RS01890 and DDA3937_RS01895 are separated by 27 nucleotides DDA3937_RS01895 and DDA3937_RS01900 overlap by 4 nucleotides
DDA3937_RS01885: DDA3937_RS01885 - ABC transporter substrate-binding protein, at 420,830 to 422,371
_RS01885
DDA3937_RS01890: DDA3937_RS01890 - ABC transporter permease, at 422,460 to 423,404
_RS01890
DDA3937_RS01895: DDA3937_RS01895 - ABC transporter permease, at 423,432 to 424,247
_RS01895
DDA3937_RS01900: DDA3937_RS01900 - ABC transporter ATP-binding protein, at 424,244 to 425,851
_RS01900
Position (kb) 422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 421.528 kb on + strand, within DDA3937_RS01885 at 421.721 kb on + strand, within DDA3937_RS01885 at 421.722 kb on - strand, within DDA3937_RS01885 at 421.722 kb on - strand, within DDA3937_RS01885 at 421.722 kb on - strand, within DDA3937_RS01885 at 421.952 kb on + strand, within DDA3937_RS01885 at 421.952 kb on + strand, within DDA3937_RS01885 at 421.993 kb on - strand, within DDA3937_RS01885 at 422.264 kb on + strand at 422.264 kb on + strand at 422.265 kb on - strand at 422.898 kb on + strand, within DDA3937_RS01890 at 422.902 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 423.067 kb on + strand, within DDA3937_RS01890 at 423.068 kb on - strand, within DDA3937_RS01890 at 423.087 kb on + strand, within DDA3937_RS01890 at 423.087 kb on + strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.146 kb on - strand, within DDA3937_RS01890 at 423.146 kb on - strand, within DDA3937_RS01890 at 423.180 kb on - strand, within DDA3937_RS01890 at 423.188 kb on + strand, within DDA3937_RS01890 at 423.188 kb on + strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.330 kb on + strand at 423.330 kb on + strand at 423.330 kb on + strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.423 kb on + strand at 423.424 kb on - strand at 423.424 kb on - strand at 423.796 kb on + strand, within DDA3937_RS01895 at 423.797 kb on - strand, within DDA3937_RS01895 at 423.797 kb on - strand, within DDA3937_RS01895 at 423.865 kb on + strand, within DDA3937_RS01895 at 423.868 kb on + strand, within DDA3937_RS01895 at 424.211 kb on - strand at 424.211 kb on - strand at 424.226 kb on + strand at 424.226 kb on + strand at 424.319 kb on - strand at 424.324 kb on + strand at 424.324 kb on + strand at 424.327 kb on + strand at 424.327 kb on + strand at 424.327 kb on + strand at 424.328 kb on - strand at 424.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 421,528 + DDA3937_RS01885 0.45 -2.7 421,721 + DDA3937_RS01885 0.58 +0.2 421,722 - DDA3937_RS01885 0.58 -0.4 421,722 - DDA3937_RS01885 0.58 -2.7 421,722 - DDA3937_RS01885 0.58 -1.1 421,952 + DDA3937_RS01885 0.73 +2.6 421,952 + DDA3937_RS01885 0.73 -0.7 421,993 - DDA3937_RS01885 0.75 -1.2 422,264 + +1.6 422,264 + +0.2 422,265 - -2.9 422,898 + DDA3937_RS01890 0.46 -0.7 422,902 + DDA3937_RS01890 0.47 -2.0 422,966 + DDA3937_RS01890 0.54 +0.9 422,966 + DDA3937_RS01890 0.54 -0.3 422,966 + DDA3937_RS01890 0.54 +0.7 422,966 + DDA3937_RS01890 0.54 +1.6 422,967 - DDA3937_RS01890 0.54 -1.4 422,967 - DDA3937_RS01890 0.54 -0.0 422,967 - +1.9 422,967 - DDA3937_RS01890 0.54 -1.6 422,967 - DDA3937_RS01890 0.54 -2.7 423,067 + DDA3937_RS01890 0.64 +1.1 423,068 - DDA3937_RS01890 0.64 +0.3 423,087 + DDA3937_RS01890 0.66 -0.7 423,087 + DDA3937_RS01890 0.66 -0.9 423,088 - DDA3937_RS01890 0.66 -1.0 423,088 - DDA3937_RS01890 0.66 -0.2 423,088 - DDA3937_RS01890 0.66 +0.1 423,088 - DDA3937_RS01890 0.66 +0.7 423,145 + DDA3937_RS01890 0.72 -0.0 423,145 + DDA3937_RS01890 0.72 +0.8 423,145 + DDA3937_RS01890 0.72 -0.1 423,145 + DDA3937_RS01890 0.72 -1.4 423,145 + DDA3937_RS01890 0.72 -1.5 423,146 - DDA3937_RS01890 0.73 -1.6 423,146 - DDA3937_RS01890 0.73 +0.5 423,180 - DDA3937_RS01890 0.76 +2.1 423,188 + DDA3937_RS01890 0.77 +0.5 423,188 + DDA3937_RS01890 0.77 +1.3 423,189 - DDA3937_RS01890 0.77 -0.7 423,189 - DDA3937_RS01890 0.77 -0.6 423,189 - DDA3937_RS01890 0.77 -2.0 423,198 + DDA3937_RS01890 0.78 +2.8 423,198 + DDA3937_RS01890 0.78 +2.2 423,198 + DDA3937_RS01890 0.78 -1.3 423,199 - DDA3937_RS01890 0.78 -0.0 423,199 - DDA3937_RS01890 0.78 +2.5 423,199 - DDA3937_RS01890 0.78 +2.4 423,258 + DDA3937_RS01890 0.84 +0.4 423,258 + DDA3937_RS01890 0.84 -2.1 423,258 + DDA3937_RS01890 0.84 +2.0 423,258 + DDA3937_RS01890 0.84 -1.2 423,258 + DDA3937_RS01890 0.84 +1.0 423,258 + DDA3937_RS01890 0.84 -2.0 423,258 + DDA3937_RS01890 0.84 +0.2 423,259 - DDA3937_RS01890 0.85 +1.4 423,259 - DDA3937_RS01890 0.85 -0.9 423,259 - DDA3937_RS01890 0.85 -1.0 423,259 - DDA3937_RS01890 0.85 -0.9 423,259 - DDA3937_RS01890 0.85 -0.4 423,259 - DDA3937_RS01890 0.85 -1.5 423,259 - DDA3937_RS01890 0.85 -2.5 423,330 + -1.7 423,330 + -2.1 423,330 + +1.3 423,331 - -2.2 423,331 - +2.5 423,331 - -3.4 423,331 - -1.9 423,423 + -0.0 423,424 - +0.1 423,424 - +2.6 423,796 + DDA3937_RS01895 0.45 -0.1 423,797 - DDA3937_RS01895 0.45 +0.3 423,797 - DDA3937_RS01895 0.45 +1.8 423,865 + DDA3937_RS01895 0.53 +0.7 423,868 + DDA3937_RS01895 0.53 -2.5 424,211 - +1.1 424,211 - -1.6 424,226 + -0.6 424,226 + -0.0 424,319 - -1.9 424,324 + -1.7 424,324 + -0.6 424,327 + -0.5 424,327 + -1.2 424,327 + +1.2 424,328 - -0.0 424,328 - -2.6
Or see this region's nucleotide sequence