Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01650 and DDA3937_RS01655 are separated by 132 nucleotides DDA3937_RS01655 and DDA3937_RS01660 are separated by 73 nucleotides DDA3937_RS01660 and DDA3937_RS01665 are separated by 9 nucleotides
DDA3937_RS01650: DDA3937_RS01650 - ClpXP protease specificity-enhancing factor, at 361,920 to 362,417
_RS01650
DDA3937_RS01655: DDA3937_RS01655 - GFA family protein, at 362,550 to 362,960
_RS01655
DDA3937_RS01660: DDA3937_RS01660 - FAD-dependent oxidoreductase, at 363,034 to 364,452
_RS01660
DDA3937_RS01665: DDA3937_RS01665 - glutamate synthase large subunit, at 364,462 to 368,922
_RS01665
Position (kb) 363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.113 kb on + strand, within DDA3937_RS01650 at 362.113 kb on + strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.415 kb on + strand at 362.443 kb on - strand at 362.487 kb on - strand at 362.576 kb on - strand at 362.576 kb on - strand at 362.587 kb on + strand at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.814 kb on + strand, within DDA3937_RS01655 at 362.814 kb on + strand, within DDA3937_RS01655 at 362.871 kb on + strand, within DDA3937_RS01655 at 362.871 kb on + strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.879 kb on + strand, within DDA3937_RS01655 at 362.882 kb on + strand, within DDA3937_RS01655 at 362.882 kb on + strand, within DDA3937_RS01655 at 362.883 kb on - strand, within DDA3937_RS01655 at 362.892 kb on + strand, within DDA3937_RS01655 at 362.892 kb on + strand, within DDA3937_RS01655 at 362.895 kb on + strand, within DDA3937_RS01655 at 362.896 kb on - strand, within DDA3937_RS01655 at 362.896 kb on - strand, within DDA3937_RS01655 at 362.905 kb on + strand, within DDA3937_RS01655 at 362.906 kb on - strand, within DDA3937_RS01655 at 362.947 kb on + strand at 362.948 kb on - strand at 362.948 kb on - strand at 362.952 kb on - strand at 362.995 kb on - strand at 363.035 kb on + strand at 363.036 kb on - strand at 363.036 kb on - strand at 363.047 kb on + strand at 363.047 kb on + strand at 363.047 kb on + strand at 363.048 kb on - strand at 363.048 kb on - strand at 363.048 kb on - strand at 363.363 kb on + strand, within DDA3937_RS01660 at 363.363 kb on + strand, within DDA3937_RS01660 at 363.364 kb on - strand, within DDA3937_RS01660 at 363.364 kb on - strand, within DDA3937_RS01660 at 363.376 kb on + strand, within DDA3937_RS01660 at 363.376 kb on + strand, within DDA3937_RS01660 at 363.376 kb on + strand, within DDA3937_RS01660 at 363.376 kb on + strand, within DDA3937_RS01660 at 363.377 kb on - strand, within DDA3937_RS01660 at 363.377 kb on - strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.608 kb on + strand, within DDA3937_RS01660 at 363.609 kb on - strand, within DDA3937_RS01660 at 363.609 kb on - strand, within DDA3937_RS01660 at 363.609 kb on - strand, within DDA3937_RS01660 at 363.609 kb on - strand, within DDA3937_RS01660 at 363.609 kb on - strand, within DDA3937_RS01660 at 363.680 kb on + strand, within DDA3937_RS01660 at 363.680 kb on + strand, within DDA3937_RS01660 at 363.680 kb on + strand, within DDA3937_RS01660 at 363.680 kb on + strand, within DDA3937_RS01660 at 363.680 kb on + strand, within DDA3937_RS01660 at 363.680 kb on + strand, within DDA3937_RS01660 at 363.729 kb on - strand, within DDA3937_RS01660 at 363.749 kb on - strand, within DDA3937_RS01660 at 363.758 kb on + strand, within DDA3937_RS01660 at 363.758 kb on + strand, within DDA3937_RS01660 at 363.758 kb on + strand, within DDA3937_RS01660 at 363.759 kb on - strand, within DDA3937_RS01660 at 363.759 kb on - strand, within DDA3937_RS01660 at 363.929 kb on + strand, within DDA3937_RS01660 at 363.930 kb on - strand, within DDA3937_RS01660 at 364.002 kb on + strand, within DDA3937_RS01660 at 364.002 kb on + strand, within DDA3937_RS01660 at 364.079 kb on + strand, within DDA3937_RS01660 at 364.079 kb on + strand, within DDA3937_RS01660 at 364.079 kb on + strand, within DDA3937_RS01660 at 364.080 kb on - strand, within DDA3937_RS01660 at 364.080 kb on - strand, within DDA3937_RS01660 at 364.188 kb on + strand, within DDA3937_RS01660 at 364.262 kb on + strand, within DDA3937_RS01660 at 364.262 kb on + strand, within DDA3937_RS01660 at 364.262 kb on + strand, within DDA3937_RS01660 at 364.262 kb on + strand, within DDA3937_RS01660 at 364.262 kb on + strand, within DDA3937_RS01660 at 364.262 kb on + strand, within DDA3937_RS01660 at 364.263 kb on - strand, within DDA3937_RS01660 at 364.359 kb on - strand at 364.420 kb on + strand at 364.420 kb on + strand at 364.420 kb on + strand at 364.421 kb on - strand at 364.421 kb on - strand at 364.421 kb on - strand at 364.421 kb on - strand at 364.463 kb on + strand at 364.475 kb on - strand at 364.500 kb on + strand at 364.501 kb on - strand at 364.544 kb on - strand at 364.739 kb on + strand at 364.739 kb on + strand at 364.739 kb on + strand at 364.817 kb on + strand at 364.817 kb on + strand at 364.817 kb on + strand at 364.818 kb on - strand at 364.818 kb on - strand at 364.869 kb on + strand at 364.869 kb on + strand at 364.869 kb on + strand at 364.869 kb on + strand at 364.870 kb on - strand at 364.870 kb on - strand at 364.870 kb on - strand at 365.033 kb on + strand, within DDA3937_RS01665 at 365.034 kb on - strand, within DDA3937_RS01665 at 365.034 kb on - strand, within DDA3937_RS01665 at 365.223 kb on - strand, within DDA3937_RS01665 at 365.325 kb on - strand, within DDA3937_RS01665 at 365.325 kb on - strand, within DDA3937_RS01665 at 365.325 kb on - strand, within DDA3937_RS01665 at 365.325 kb on - strand, within DDA3937_RS01665
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 362,081 + DDA3937_RS01650 0.32 -1.0 362,081 + DDA3937_RS01650 0.32 +2.1 362,081 + DDA3937_RS01650 0.32 -1.0 362,113 + DDA3937_RS01650 0.39 -1.6 362,113 + DDA3937_RS01650 0.39 +0.3 362,114 - DDA3937_RS01650 0.39 -0.4 362,114 - DDA3937_RS01650 0.39 -1.6 362,114 - DDA3937_RS01650 0.39 -2.2 362,114 - DDA3937_RS01650 0.39 -0.9 362,199 + DDA3937_RS01650 0.56 -1.8 362,199 + DDA3937_RS01650 0.56 -2.4 362,199 + DDA3937_RS01650 0.56 +1.3 362,199 + DDA3937_RS01650 0.56 -2.8 362,199 + DDA3937_RS01650 0.56 +2.1 362,415 + +0.7 362,443 - -0.4 362,487 - +1.6 362,576 - +0.0 362,576 - +3.8 362,587 + -1.6 362,612 + DDA3937_RS01655 0.15 +0.4 362,612 + DDA3937_RS01655 0.15 -1.8 362,612 + DDA3937_RS01655 0.15 -2.3 362,612 + DDA3937_RS01655 0.15 +1.2 362,612 + DDA3937_RS01655 0.15 -2.1 362,612 + DDA3937_RS01655 0.15 +1.3 362,612 + DDA3937_RS01655 0.15 -0.4 362,612 + DDA3937_RS01655 0.15 +1.6 362,612 + DDA3937_RS01655 0.15 -0.3 362,612 + DDA3937_RS01655 0.15 +1.7 362,613 - DDA3937_RS01655 0.15 -1.8 362,613 - DDA3937_RS01655 0.15 -2.9 362,613 - DDA3937_RS01655 0.15 -0.4 362,613 - DDA3937_RS01655 0.15 -1.8 362,613 - DDA3937_RS01655 0.15 +1.3 362,613 - DDA3937_RS01655 0.15 +0.4 362,613 - DDA3937_RS01655 0.15 -0.7 362,613 - DDA3937_RS01655 0.15 -2.4 362,613 - DDA3937_RS01655 0.15 -1.6 362,613 - DDA3937_RS01655 0.15 +0.3 362,613 - DDA3937_RS01655 0.15 -1.4 362,625 + DDA3937_RS01655 0.18 +0.6 362,625 + DDA3937_RS01655 0.18 -0.7 362,625 + DDA3937_RS01655 0.18 -1.0 362,625 + DDA3937_RS01655 0.18 -0.7 362,625 + DDA3937_RS01655 0.18 -0.0 362,625 + DDA3937_RS01655 0.18 +0.0 362,625 + DDA3937_RS01655 0.18 +1.5 362,626 - DDA3937_RS01655 0.18 -3.2 362,626 - DDA3937_RS01655 0.18 -0.8 362,626 - DDA3937_RS01655 0.18 -0.3 362,626 - DDA3937_RS01655 0.18 -2.1 362,626 - DDA3937_RS01655 0.18 +0.6 362,626 - DDA3937_RS01655 0.18 -0.8 362,626 - DDA3937_RS01655 0.18 -1.6 362,626 - DDA3937_RS01655 0.18 +0.3 362,643 - DDA3937_RS01655 0.23 +0.5 362,643 - DDA3937_RS01655 0.23 -0.0 362,643 - DDA3937_RS01655 0.23 -1.7 362,643 - DDA3937_RS01655 0.23 +0.0 362,814 + DDA3937_RS01655 0.64 -2.3 362,814 + DDA3937_RS01655 0.64 +1.0 362,871 + DDA3937_RS01655 0.78 -2.0 362,871 + DDA3937_RS01655 0.78 +2.2 362,872 - DDA3937_RS01655 0.78 +0.1 362,872 - DDA3937_RS01655 0.78 +0.2 362,872 - DDA3937_RS01655 0.78 -1.9 362,872 - DDA3937_RS01655 0.78 -2.4 362,879 + DDA3937_RS01655 0.80 +2.5 362,882 + DDA3937_RS01655 0.81 +0.3 362,882 + DDA3937_RS01655 0.81 -0.4 362,883 - DDA3937_RS01655 0.81 -2.0 362,892 + DDA3937_RS01655 0.83 +0.1 362,892 + DDA3937_RS01655 0.83 -3.3 362,895 + DDA3937_RS01655 0.84 -1.5 362,896 - DDA3937_RS01655 0.84 -1.0 362,896 - DDA3937_RS01655 0.84 -2.6 362,905 + DDA3937_RS01655 0.86 +0.6 362,906 - DDA3937_RS01655 0.87 +0.3 362,947 + +1.9 362,948 - -1.0 362,948 - -1.6 362,952 - -1.2 362,995 - -0.4 363,035 + +0.0 363,036 - -1.3 363,036 - +0.2 363,047 + +1.4 363,047 + -1.8 363,047 + +0.5 363,048 - -1.6 363,048 - -3.3 363,048 - +0.2 363,363 + DDA3937_RS01660 0.23 -0.4 363,363 + DDA3937_RS01660 0.23 -1.8 363,364 - DDA3937_RS01660 0.23 +1.6 363,364 - DDA3937_RS01660 0.23 +0.4 363,376 + DDA3937_RS01660 0.24 -1.4 363,376 + DDA3937_RS01660 0.24 +0.0 363,376 + DDA3937_RS01660 0.24 -1.4 363,376 + DDA3937_RS01660 0.24 -1.7 363,377 - DDA3937_RS01660 0.24 -1.0 363,377 - DDA3937_RS01660 0.24 -0.2 363,608 + DDA3937_RS01660 0.40 -0.7 363,608 + DDA3937_RS01660 0.40 +1.2 363,608 + DDA3937_RS01660 0.40 -0.4 363,608 + DDA3937_RS01660 0.40 -0.9 363,608 + DDA3937_RS01660 0.40 +0.8 363,608 + +1.6 363,608 + DDA3937_RS01660 0.40 -2.1 363,608 + DDA3937_RS01660 0.40 -0.4 363,608 + DDA3937_RS01660 0.40 -2.0 363,608 + DDA3937_RS01660 0.40 +0.5 363,608 + DDA3937_RS01660 0.40 +0.7 363,608 + DDA3937_RS01660 0.40 -0.8 363,608 + DDA3937_RS01660 0.40 -1.4 363,609 - DDA3937_RS01660 0.41 +0.0 363,609 - DDA3937_RS01660 0.41 +1.2 363,609 - DDA3937_RS01660 0.41 -1.2 363,609 - DDA3937_RS01660 0.41 +0.0 363,609 - DDA3937_RS01660 0.41 -1.7 363,680 + DDA3937_RS01660 0.46 -1.0 363,680 + DDA3937_RS01660 0.46 -3.1 363,680 + DDA3937_RS01660 0.46 -0.8 363,680 + DDA3937_RS01660 0.46 +0.3 363,680 + DDA3937_RS01660 0.46 -2.1 363,680 + DDA3937_RS01660 0.46 -1.0 363,729 - DDA3937_RS01660 0.49 -1.2 363,749 - DDA3937_RS01660 0.50 -1.3 363,758 + DDA3937_RS01660 0.51 -0.9 363,758 + DDA3937_RS01660 0.51 +0.5 363,758 + DDA3937_RS01660 0.51 +0.2 363,759 - DDA3937_RS01660 0.51 +0.3 363,759 - DDA3937_RS01660 0.51 -1.7 363,929 + DDA3937_RS01660 0.63 -2.5 363,930 - DDA3937_RS01660 0.63 -2.3 364,002 + DDA3937_RS01660 0.68 -0.6 364,002 + DDA3937_RS01660 0.68 +0.1 364,079 + DDA3937_RS01660 0.74 -0.8 364,079 + DDA3937_RS01660 0.74 +1.0 364,079 + DDA3937_RS01660 0.74 +0.2 364,080 - DDA3937_RS01660 0.74 +0.7 364,080 - DDA3937_RS01660 0.74 -0.2 364,188 + DDA3937_RS01660 0.81 -1.2 364,262 + DDA3937_RS01660 0.87 -0.5 364,262 + DDA3937_RS01660 0.87 -1.0 364,262 + DDA3937_RS01660 0.87 -2.2 364,262 + DDA3937_RS01660 0.87 -2.6 364,262 + DDA3937_RS01660 0.87 -2.0 364,262 + DDA3937_RS01660 0.87 -2.4 364,263 - DDA3937_RS01660 0.87 -0.1 364,359 - -1.8 364,420 + -0.8 364,420 + -1.8 364,420 + +0.7 364,421 - -2.6 364,421 - +0.3 364,421 - -0.5 364,421 - -1.1 364,463 + -2.5 364,475 - -2.2 364,500 + -1.1 364,501 - -0.5 364,544 - +1.0 364,739 + +0.4 364,739 + -0.4 364,739 + +2.7 364,817 + +0.8 364,817 + +0.6 364,817 + +1.5 364,818 - -0.4 364,818 - +0.3 364,869 + -2.1 364,869 + +1.0 364,869 + -1.6 364,869 + -0.8 364,870 - -0.5 364,870 - -1.2 364,870 - +3.2 365,033 + DDA3937_RS01665 0.13 -2.1 365,034 - DDA3937_RS01665 0.13 +1.3 365,034 - DDA3937_RS01665 0.13 -1.6 365,223 - DDA3937_RS01665 0.17 -0.7 365,325 - DDA3937_RS01665 0.19 -0.3 365,325 - DDA3937_RS01665 0.19 -0.1 365,325 - DDA3937_RS01665 0.19 -1.4 365,325 - DDA3937_RS01665 0.19 -1.2
Or see this region's nucleotide sequence