Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01295

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01290 and DDA3937_RS01295 are separated by 205 nucleotidesDDA3937_RS01295 and DDA3937_RS01300 are separated by 77 nucleotides DDA3937_RS01290: DDA3937_RS01290 - endonuclease, at 291,208 to 292,350 _RS01290 DDA3937_RS01295: DDA3937_RS01295 - SDR family oxidoreductase, at 292,556 to 293,398 _RS01295 DDA3937_RS01300: DDA3937_RS01300 - LysR family transcriptional regulator, at 293,476 to 294,369 _RS01300 Position (kb) 292 293 294Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 291.676 kb on + strand, within DDA3937_RS01290at 291.676 kb on + strand, within DDA3937_RS01290at 291.677 kb on - strand, within DDA3937_RS01290at 291.677 kb on - strand, within DDA3937_RS01290at 291.741 kb on + strand, within DDA3937_RS01290at 291.741 kb on + strand, within DDA3937_RS01290at 291.742 kb on - strand, within DDA3937_RS01290at 291.742 kb on - strand, within DDA3937_RS01290at 291.742 kb on - strand, within DDA3937_RS01290at 291.742 kb on - strand, within DDA3937_RS01290at 291.742 kb on - strand, within DDA3937_RS01290at 291.763 kb on - strandat 291.824 kb on + strand, within DDA3937_RS01290at 291.824 kb on + strand, within DDA3937_RS01290at 291.824 kb on + strand, within DDA3937_RS01290at 291.824 kb on + strand, within DDA3937_RS01290at 291.824 kb on + strand, within DDA3937_RS01290at 291.824 kb on + strand, within DDA3937_RS01290at 291.824 kb on + strand, within DDA3937_RS01290at 291.825 kb on - strand, within DDA3937_RS01290at 291.825 kb on - strand, within DDA3937_RS01290at 291.861 kb on + strand, within DDA3937_RS01290at 291.861 kb on + strand, within DDA3937_RS01290at 291.861 kb on + strand, within DDA3937_RS01290at 291.862 kb on - strand, within DDA3937_RS01290at 291.870 kb on + strand, within DDA3937_RS01290at 291.870 kb on + strand, within DDA3937_RS01290at 291.871 kb on - strand, within DDA3937_RS01290at 291.871 kb on - strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.982 kb on + strand, within DDA3937_RS01290at 291.983 kb on - strand, within DDA3937_RS01290at 291.983 kb on - strand, within DDA3937_RS01290at 291.983 kb on - strand, within DDA3937_RS01290at 291.983 kb on - strand, within DDA3937_RS01290at 291.983 kb on - strand, within DDA3937_RS01290at 291.983 kb on - strand, within DDA3937_RS01290at 291.983 kb on - strand, within DDA3937_RS01290at 291.983 kb on - strand, within DDA3937_RS01290at 292.107 kb on + strand, within DDA3937_RS01290at 292.107 kb on + strand, within DDA3937_RS01290at 292.107 kb on + strand, within DDA3937_RS01290at 292.108 kb on - strand, within DDA3937_RS01290at 292.108 kb on - strand, within DDA3937_RS01290at 292.108 kb on - strand, within DDA3937_RS01290at 292.108 kb on - strand, within DDA3937_RS01290at 292.111 kb on + strand, within DDA3937_RS01290at 292.111 kb on + strand, within DDA3937_RS01290at 292.112 kb on - strand, within DDA3937_RS01290at 292.112 kb on - strand, within DDA3937_RS01290at 292.112 kb on - strand, within DDA3937_RS01290at 292.114 kb on + strand, within DDA3937_RS01290at 292.114 kb on + strand, within DDA3937_RS01290at 292.114 kb on + strand, within DDA3937_RS01290at 292.115 kb on - strand, within DDA3937_RS01290at 292.115 kb on - strand, within DDA3937_RS01290at 292.159 kb on + strand, within DDA3937_RS01290at 292.159 kb on + strand, within DDA3937_RS01290at 292.161 kb on + strand, within DDA3937_RS01290at 292.162 kb on - strand, within DDA3937_RS01290at 292.162 kb on - strand, within DDA3937_RS01290at 292.162 kb on - strand, within DDA3937_RS01290at 292.162 kb on - strand, within DDA3937_RS01290at 292.174 kb on - strand, within DDA3937_RS01290at 292.225 kb on + strand, within DDA3937_RS01290at 292.225 kb on + strand, within DDA3937_RS01290at 292.225 kb on + strand, within DDA3937_RS01290at 292.226 kb on - strand, within DDA3937_RS01290at 292.471 kb on + strandat 292.472 kb on - strandat 292.472 kb on - strandat 292.472 kb on - strandat 292.492 kb on + strandat 292.492 kb on + strandat 292.492 kb on + strandat 292.493 kb on - strandat 292.494 kb on + strandat 292.494 kb on + strandat 292.494 kb on + strandat 292.494 kb on + strandat 292.494 kb on + strandat 292.494 kb on + strandat 292.494 kb on + strandat 292.495 kb on - strandat 292.495 kb on - strandat 292.495 kb on - strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.498 kb on - strandat 292.656 kb on + strand, within DDA3937_RS01295at 292.674 kb on + strand, within DDA3937_RS01295at 292.675 kb on - strand, within DDA3937_RS01295at 292.675 kb on - strand, within DDA3937_RS01295at 293.008 kb on + strand, within DDA3937_RS01295at 293.118 kb on - strand, within DDA3937_RS01295at 293.153 kb on + strand, within DDA3937_RS01295at 293.154 kb on - strand, within DDA3937_RS01295at 293.154 kb on - strand, within DDA3937_RS01295at 293.186 kb on - strand, within DDA3937_RS01295at 293.186 kb on - strand, within DDA3937_RS01295at 293.281 kb on + strand, within DDA3937_RS01295at 293.281 kb on + strand, within DDA3937_RS01295at 293.282 kb on - strand, within DDA3937_RS01295at 293.282 kb on - strand, within DDA3937_RS01295at 293.396 kb on + strandat 293.420 kb on - strandat 293.463 kb on + strandat 293.532 kb on + strandat 293.532 kb on + strandat 293.543 kb on + strandat 293.543 kb on + strandat 293.544 kb on - strandat 293.546 kb on + strandat 293.546 kb on + strandat 293.552 kb on + strandat 293.552 kb on + strandat 293.552 kb on + strandat 293.552 kb on + strandat 293.553 kb on - strandat 293.553 kb on - strandat 293.553 kb on - strandat 293.553 kb on - strandat 293.555 kb on + strandat 293.556 kb on - strandat 293.595 kb on + strand, within DDA3937_RS01300at 293.642 kb on + strand, within DDA3937_RS01300at 293.642 kb on + strand, within DDA3937_RS01300at 293.643 kb on - strand, within DDA3937_RS01300at 293.643 kb on - strand, within DDA3937_RS01300at 293.643 kb on - strand, within DDA3937_RS01300at 293.643 kb on - strand, within DDA3937_RS01300at 293.686 kb on + strand, within DDA3937_RS01300at 293.686 kb on + strand, within DDA3937_RS01300at 293.686 kb on + strand, within DDA3937_RS01300at 293.687 kb on - strand, within DDA3937_RS01300at 293.687 kb on - strand, within DDA3937_RS01300at 293.687 kb on - strand, within DDA3937_RS01300at 293.687 kb on - strand, within DDA3937_RS01300at 293.687 kb on - strand, within DDA3937_RS01300at 293.809 kb on + strand, within DDA3937_RS01300at 293.810 kb on - strand, within DDA3937_RS01300at 293.849 kb on + strand, within DDA3937_RS01300at 293.850 kb on - strand, within DDA3937_RS01300at 293.850 kb on - strand, within DDA3937_RS01300at 293.850 kb on - strand, within DDA3937_RS01300at 293.976 kb on + strand, within DDA3937_RS01300at 293.977 kb on - strand, within DDA3937_RS01300at 293.988 kb on + strand, within DDA3937_RS01300at 293.989 kb on - strand, within DDA3937_RS01300at 294.265 kb on + strand, within DDA3937_RS01300at 294.265 kb on + strand, within DDA3937_RS01300at 294.266 kb on - strand, within DDA3937_RS01300at 294.266 kb on - strand, within DDA3937_RS01300at 294.266 kb on - strand, within DDA3937_RS01300at 294.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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291,676 + DDA3937_RS01290 0.41 +1.6
291,676 + DDA3937_RS01290 0.41 -0.1
291,677 - DDA3937_RS01290 0.41 +0.2
291,677 - DDA3937_RS01290 0.41 -2.6
291,741 + DDA3937_RS01290 0.47 -1.6
291,741 + DDA3937_RS01290 0.47 -1.7
291,742 - DDA3937_RS01290 0.47 +2.3
291,742 - DDA3937_RS01290 0.47 -2.0
291,742 - DDA3937_RS01290 0.47 +3.1
291,742 - DDA3937_RS01290 0.47 -2.2
291,742 - DDA3937_RS01290 0.47 -2.8
291,763 - +0.0
291,824 + DDA3937_RS01290 0.54 -1.6
291,824 + DDA3937_RS01290 0.54 +2.0
291,824 + DDA3937_RS01290 0.54 +0.5
291,824 + DDA3937_RS01290 0.54 -1.2
291,824 + DDA3937_RS01290 0.54 -2.6
291,824 + DDA3937_RS01290 0.54 -0.7
291,824 + DDA3937_RS01290 0.54 +1.6
291,825 - DDA3937_RS01290 0.54 -2.0
291,825 - DDA3937_RS01290 0.54 +1.9
291,861 + DDA3937_RS01290 0.57 +0.5
291,861 + DDA3937_RS01290 0.57 +2.9
291,861 + DDA3937_RS01290 0.57 -1.0
291,862 - DDA3937_RS01290 0.57 +2.2
291,870 + DDA3937_RS01290 0.58 +0.7
291,870 + DDA3937_RS01290 0.58 +1.6
291,871 - DDA3937_RS01290 0.58 -1.7
291,871 - DDA3937_RS01290 0.58 -1.7
291,982 + DDA3937_RS01290 0.68 +0.7
291,982 + DDA3937_RS01290 0.68 +0.7
291,982 + DDA3937_RS01290 0.68 +0.7
291,982 + DDA3937_RS01290 0.68 -1.7
291,982 + DDA3937_RS01290 0.68 -0.4
291,982 + DDA3937_RS01290 0.68 -0.3
291,982 + DDA3937_RS01290 0.68 -0.4
291,982 + DDA3937_RS01290 0.68 -0.4
291,982 + DDA3937_RS01290 0.68 -2.4
291,982 + DDA3937_RS01290 0.68 -1.1
291,983 - DDA3937_RS01290 0.68 -0.3
291,983 - DDA3937_RS01290 0.68 -1.4
291,983 - DDA3937_RS01290 0.68 +0.0
291,983 - DDA3937_RS01290 0.68 +0.2
291,983 - DDA3937_RS01290 0.68 -2.8
291,983 - DDA3937_RS01290 0.68 +0.6
291,983 - DDA3937_RS01290 0.68 +1.2
291,983 - DDA3937_RS01290 0.68 +2.9
292,107 + DDA3937_RS01290 0.79 -0.7
292,107 + DDA3937_RS01290 0.79 -3.2
292,107 + DDA3937_RS01290 0.79 +0.7
292,108 - DDA3937_RS01290 0.79 -1.0
292,108 - DDA3937_RS01290 0.79 -1.7
292,108 - DDA3937_RS01290 0.79 +0.3
292,108 - DDA3937_RS01290 0.79 -2.2
292,111 + DDA3937_RS01290 0.79 -0.5
292,111 + DDA3937_RS01290 0.79 +1.2
292,112 - DDA3937_RS01290 0.79 +0.8
292,112 - DDA3937_RS01290 0.79 -2.4
292,112 - DDA3937_RS01290 0.79 +0.8
292,114 + DDA3937_RS01290 0.79 +1.3
292,114 + DDA3937_RS01290 0.79 +1.3
292,114 + DDA3937_RS01290 0.79 +0.4
292,115 - DDA3937_RS01290 0.79 +1.6
292,115 - DDA3937_RS01290 0.79 -0.7
292,159 + DDA3937_RS01290 0.83 +2.3
292,159 + DDA3937_RS01290 0.83 +2.9
292,161 + DDA3937_RS01290 0.83 +1.1
292,162 - DDA3937_RS01290 0.83 -1.1
292,162 - DDA3937_RS01290 0.83 +1.1
292,162 - DDA3937_RS01290 0.83 -1.4
292,162 - DDA3937_RS01290 0.83 -2.8
292,174 - DDA3937_RS01290 0.85 +3.0
292,225 + DDA3937_RS01290 0.89 -1.5
292,225 + DDA3937_RS01290 0.89 -2.5
292,225 + DDA3937_RS01290 0.89 +0.3
292,226 - DDA3937_RS01290 0.89 -1.2
292,471 + +1.0
292,472 - +0.8
292,472 - +2.9
292,472 - -2.0
292,492 + +1.5
292,492 + +2.9
292,492 + -0.2
292,493 - -0.2
292,494 + +2.5
292,494 + -0.6
292,494 + -1.3
292,494 + -1.4
292,494 + -2.6
292,494 + -1.0
292,494 + -1.4
292,495 - -1.3
292,495 - +0.8
292,495 - -1.6
292,497 + +0.5
292,497 + -1.0
292,497 + -1.2
292,497 + -0.8
292,497 + +0.1
292,497 + -0.2
292,497 + -2.3
292,497 + -1.7
292,497 + +1.3
292,497 + -1.0
292,497 + +0.0
292,497 + +0.3
292,497 + -0.5
292,498 - -2.5
292,498 - +2.5
292,498 - -1.7
292,498 - +2.2
292,498 - -0.7
292,498 - -2.2
292,498 - -1.1
292,498 - -1.4
292,498 - +1.7
292,498 - +0.0
292,656 + DDA3937_RS01295 0.12 -0.4
292,674 + DDA3937_RS01295 0.14 +0.1
292,675 - DDA3937_RS01295 0.14 -0.7
292,675 - DDA3937_RS01295 0.14 +0.6
293,008 + DDA3937_RS01295 0.54 +1.9
293,118 - DDA3937_RS01295 0.67 -0.4
293,153 + DDA3937_RS01295 0.71 +0.1
293,154 - DDA3937_RS01295 0.71 -2.0
293,154 - DDA3937_RS01295 0.71 +1.2
293,186 - DDA3937_RS01295 0.75 +0.9
293,186 - DDA3937_RS01295 0.75 -0.0
293,281 + DDA3937_RS01295 0.86 -0.4
293,281 + DDA3937_RS01295 0.86 +4.3
293,282 - DDA3937_RS01295 0.86 +1.3
293,282 - DDA3937_RS01295 0.86 +1.1
293,396 + -1.0
293,420 - -0.6
293,463 + -2.7
293,532 + -1.0
293,532 + +0.0
293,543 + +0.2
293,543 + +0.9
293,544 - -0.4
293,546 + +0.5
293,546 + -1.0
293,552 + +1.0
293,552 + -3.5
293,552 + -2.6
293,552 + -0.4
293,553 - -2.1
293,553 - -0.2
293,553 - -2.3
293,553 - +1.6
293,555 + -2.9
293,556 - -0.6
293,595 + DDA3937_RS01300 0.13 -1.7
293,642 + DDA3937_RS01300 0.19 -1.3
293,642 + DDA3937_RS01300 0.19 -1.4
293,643 - DDA3937_RS01300 0.19 +0.5
293,643 - DDA3937_RS01300 0.19 -4.1
293,643 - DDA3937_RS01300 0.19 +1.5
293,643 - DDA3937_RS01300 0.19 -2.8
293,686 + DDA3937_RS01300 0.23 -1.2
293,686 + DDA3937_RS01300 0.23 +2.4
293,686 + DDA3937_RS01300 0.23 -1.2
293,687 - DDA3937_RS01300 0.24 -0.1
293,687 - DDA3937_RS01300 0.24 -1.6
293,687 - DDA3937_RS01300 0.24 -3.0
293,687 - DDA3937_RS01300 0.24 +0.5
293,687 - DDA3937_RS01300 0.24 +1.5
293,809 + DDA3937_RS01300 0.37 +1.4
293,810 - DDA3937_RS01300 0.37 -3.1
293,849 + DDA3937_RS01300 0.42 -1.0
293,850 - DDA3937_RS01300 0.42 -0.2
293,850 - DDA3937_RS01300 0.42 -1.6
293,850 - DDA3937_RS01300 0.42 -0.8
293,976 + DDA3937_RS01300 0.56 -1.0
293,977 - DDA3937_RS01300 0.56 -1.8
293,988 + DDA3937_RS01300 0.57 -0.1
293,989 - DDA3937_RS01300 0.57 -1.4
294,265 + DDA3937_RS01300 0.88 +0.1
294,265 + DDA3937_RS01300 0.88 +0.9
294,266 - DDA3937_RS01300 0.88 +0.9
294,266 - DDA3937_RS01300 0.88 +0.9
294,266 - DDA3937_RS01300 0.88 -2.2
294,364 - +0.4

Or see this region's nucleotide sequence