Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01105 and DDA3937_RS01110 are separated by 177 nucleotides DDA3937_RS01110 and DDA3937_RS01115 are separated by 43 nucleotides DDA3937_RS01115 and DDA3937_RS23385 are separated by 267 nucleotides DDA3937_RS23385 and DDA3937_RS21760 are separated by 224 nucleotides
DDA3937_RS01105: DDA3937_RS01105 - DNA-directed RNA polymerase subunit beta', at 251,342 to 255,565
_RS01105
DDA3937_RS01110: DDA3937_RS01110 - hypothetical protein, at 255,743 to 256,000
_RS01110
DDA3937_RS01115: DDA3937_RS01115 - DUF1176 domain-containing protein, at 256,044 to 257,141
_RS01115
DDA3937_RS23385: DDA3937_RS23385 - DUF1127 domain-containing protein, at 257,409 to 257,591
_RS23385
DDA3937_RS21760: DDA3937_RS21760 - DUF1127 domain-containing protein, at 257,816 to 258,001
_RS21760
Position (kb) 256
257
258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 255.624 kb on - strand at 255.625 kb on + strand at 255.625 kb on + strand at 255.626 kb on - strand at 255.632 kb on - strand at 255.651 kb on + strand at 255.652 kb on - strand at 255.682 kb on + strand at 255.682 kb on + strand at 255.682 kb on + strand at 255.743 kb on - strand at 255.800 kb on - strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.898 kb on + strand, within DDA3937_RS01110 at 255.998 kb on + strand at 255.998 kb on + strand at 255.998 kb on + strand at 255.999 kb on - strand at 255.999 kb on - strand at 255.999 kb on - strand at 255.999 kb on - strand at 256.007 kb on + strand at 256.007 kb on + strand at 256.008 kb on - strand at 256.009 kb on + strand at 256.009 kb on + strand at 256.009 kb on + strand at 256.010 kb on - strand at 256.010 kb on - strand at 256.010 kb on - strand at 256.150 kb on + strand at 256.150 kb on + strand at 256.151 kb on - strand at 256.151 kb on - strand at 256.169 kb on + strand, within DDA3937_RS01115 at 256.205 kb on + strand, within DDA3937_RS01115 at 256.216 kb on - strand, within DDA3937_RS01115 at 256.216 kb on - strand, within DDA3937_RS01115 at 256.232 kb on - strand, within DDA3937_RS01115 at 256.302 kb on + strand, within DDA3937_RS01115 at 256.303 kb on - strand, within DDA3937_RS01115 at 256.371 kb on + strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.564 kb on + strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.636 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.892 kb on + strand, within DDA3937_RS01115 at 256.893 kb on - strand, within DDA3937_RS01115 at 256.947 kb on + strand, within DDA3937_RS01115 at 256.948 kb on - strand, within DDA3937_RS01115 at 256.971 kb on + strand, within DDA3937_RS01115 at 256.972 kb on - strand, within DDA3937_RS01115 at 257.026 kb on + strand at 257.026 kb on + strand, within DDA3937_RS01115 at 257.026 kb on + strand, within DDA3937_RS01115 at 257.027 kb on - strand, within DDA3937_RS01115 at 257.027 kb on - strand, within DDA3937_RS01115 at 257.058 kb on + strand at 257.058 kb on + strand at 257.064 kb on + strand at 257.064 kb on + strand at 257.064 kb on + strand at 257.065 kb on - strand at 257.065 kb on - strand at 257.065 kb on - strand at 257.234 kb on - strand at 257.250 kb on + strand at 257.250 kb on + strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.302 kb on + strand at 257.303 kb on - strand at 257.327 kb on + strand at 257.410 kb on + strand at 257.411 kb on - strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.440 kb on - strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.474 kb on + strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.479 kb on - strand, within DDA3937_RS23385 at 257.497 kb on - strand, within DDA3937_RS23385 at 257.564 kb on + strand, within DDA3937_RS23385 at 257.565 kb on - strand, within DDA3937_RS23385 at 257.597 kb on + strand at 257.598 kb on - strand at 257.607 kb on - strand at 257.677 kb on + strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.693 kb on + strand at 257.694 kb on - strand at 257.727 kb on - strand at 257.756 kb on - strand at 257.769 kb on - strand at 257.850 kb on - strand at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.965 kb on + strand, within DDA3937_RS21760 at 257.965 kb on + strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.970 kb on - strand, within DDA3937_RS21760 at 257.970 kb on - strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.995 kb on + strand at 257.995 kb on + strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 258.004 kb on + strand at 258.004 kb on + strand at 258.005 kb on - strand at 258.005 kb on - strand at 258.005 kb on - strand at 258.089 kb on - strand at 258.137 kb on + strand at 258.137 kb on + strand at 258.138 kb on - strand at 258.138 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 255,624 - -1.0 255,625 + +0.8 255,625 + -1.6 255,626 - -1.0 255,632 - +2.6 255,651 + -0.4 255,652 - -0.7 255,682 + -0.7 255,682 + -0.6 255,682 + -1.2 255,743 - +0.9 255,800 - DDA3937_RS01110 0.22 -0.8 255,820 + DDA3937_RS01110 0.30 -2.1 255,820 + DDA3937_RS01110 0.30 -0.1 255,820 + DDA3937_RS01110 0.30 +2.1 255,898 + DDA3937_RS01110 0.60 -0.2 255,998 + -0.7 255,998 + +1.9 255,998 + -0.5 255,999 - +0.6 255,999 - -2.6 255,999 - +1.1 255,999 - +3.2 256,007 + -2.7 256,007 + -2.3 256,008 - +0.3 256,009 + +0.1 256,009 + +0.0 256,009 + -0.8 256,010 - +2.5 256,010 - -2.0 256,010 - +0.4 256,150 + +1.1 256,150 + +1.4 256,151 - +0.0 256,151 - -2.1 256,169 + DDA3937_RS01115 0.11 -1.0 256,205 + DDA3937_RS01115 0.15 +1.1 256,216 - DDA3937_RS01115 0.16 -2.2 256,216 - DDA3937_RS01115 0.16 -2.1 256,232 - DDA3937_RS01115 0.17 +0.7 256,302 + DDA3937_RS01115 0.23 +0.6 256,303 - DDA3937_RS01115 0.24 -1.7 256,371 + DDA3937_RS01115 0.30 -2.0 256,372 - DDA3937_RS01115 0.30 -3.1 256,372 - DDA3937_RS01115 0.30 -2.1 256,372 - DDA3937_RS01115 0.30 +1.9 256,372 - DDA3937_RS01115 0.30 -0.9 256,372 - DDA3937_RS01115 0.30 -0.7 256,564 + DDA3937_RS01115 0.47 -1.0 256,565 - DDA3937_RS01115 0.47 -1.0 256,565 - DDA3937_RS01115 0.47 +3.0 256,565 - DDA3937_RS01115 0.47 -1.0 256,635 + DDA3937_RS01115 0.54 +1.0 256,635 + DDA3937_RS01115 0.54 +0.0 256,635 + DDA3937_RS01115 0.54 -0.6 256,635 + DDA3937_RS01115 0.54 +0.9 256,636 - DDA3937_RS01115 0.54 +1.4 256,670 - DDA3937_RS01115 0.57 +0.1 256,670 - DDA3937_RS01115 0.57 +1.7 256,670 - DDA3937_RS01115 0.57 +1.6 256,892 + DDA3937_RS01115 0.77 +3.4 256,893 - DDA3937_RS01115 0.77 -1.4 256,947 + DDA3937_RS01115 0.82 +1.6 256,948 - DDA3937_RS01115 0.82 -2.9 256,971 + DDA3937_RS01115 0.84 -0.1 256,972 - DDA3937_RS01115 0.85 +2.4 257,026 + +0.6 257,026 + DDA3937_RS01115 0.89 -0.3 257,026 + DDA3937_RS01115 0.89 +0.7 257,027 - DDA3937_RS01115 0.90 -1.9 257,027 - DDA3937_RS01115 0.90 -0.1 257,058 + -0.9 257,058 + -0.2 257,064 + -0.3 257,064 + -1.9 257,064 + +0.0 257,065 - -3.6 257,065 - -1.0 257,065 - +1.4 257,234 - +0.9 257,250 + +2.8 257,250 + -0.7 257,251 - +0.5 257,251 - -1.0 257,251 - +0.9 257,251 - -0.2 257,302 + -1.7 257,303 - -0.9 257,327 + -0.8 257,410 + -0.0 257,411 - -0.8 257,415 + -1.1 257,415 + -2.9 257,415 + -0.7 257,415 + +0.8 257,415 + +2.0 257,415 + -0.8 257,415 + -1.1 257,415 + -2.1 257,416 - +1.6 257,416 - -2.0 257,416 - +0.0 257,416 - +1.9 257,416 - +1.2 257,416 - -1.0 257,416 - -3.1 257,440 - DDA3937_RS23385 0.17 -1.9 257,445 + DDA3937_RS23385 0.20 +0.0 257,445 + DDA3937_RS23385 0.20 +2.4 257,445 + DDA3937_RS23385 0.20 +0.2 257,445 + DDA3937_RS23385 0.20 -2.2 257,445 + DDA3937_RS23385 0.20 -0.3 257,446 - DDA3937_RS23385 0.20 +1.8 257,446 - DDA3937_RS23385 0.20 +1.3 257,446 - DDA3937_RS23385 0.20 -2.9 257,446 - DDA3937_RS23385 0.20 -1.8 257,474 + DDA3937_RS23385 0.36 +0.1 257,475 - DDA3937_RS23385 0.36 -0.8 257,475 - DDA3937_RS23385 0.36 -1.6 257,475 - DDA3937_RS23385 0.36 +1.6 257,475 - DDA3937_RS23385 0.36 +1.4 257,479 - DDA3937_RS23385 0.38 -0.0 257,497 - DDA3937_RS23385 0.48 +0.8 257,564 + DDA3937_RS23385 0.85 -0.9 257,565 - DDA3937_RS23385 0.85 -0.0 257,597 + -2.3 257,598 - -0.4 257,607 - +2.9 257,677 + +0.6 257,678 - -0.8 257,678 - -0.4 257,678 - +0.0 257,678 - +0.9 257,678 - -1.7 257,678 - -1.0 257,678 - -0.2 257,678 - -1.2 257,693 + -1.4 257,694 - +0.9 257,727 - +0.8 257,756 - -1.8 257,769 - -0.1 257,850 - +0.0 257,924 + DDA3937_RS21760 0.58 +0.3 257,924 + DDA3937_RS21760 0.58 +0.9 257,924 + DDA3937_RS21760 0.58 -0.6 257,924 + DDA3937_RS21760 0.58 -0.1 257,924 + DDA3937_RS21760 0.58 +0.0 257,924 + DDA3937_RS21760 0.58 -0.4 257,924 + DDA3937_RS21760 0.58 -1.9 257,925 - DDA3937_RS21760 0.59 -3.1 257,925 - DDA3937_RS21760 0.59 -1.4 257,925 - DDA3937_RS21760 0.59 +2.8 257,925 - DDA3937_RS21760 0.59 -1.8 257,925 - DDA3937_RS21760 0.59 +1.4 257,925 - DDA3937_RS21760 0.59 -1.8 257,925 - DDA3937_RS21760 0.59 -0.1 257,925 - DDA3937_RS21760 0.59 -1.2 257,927 + DDA3937_RS21760 0.60 -0.7 257,927 + DDA3937_RS21760 0.60 +1.5 257,927 + DDA3937_RS21760 0.60 +1.8 257,965 + DDA3937_RS21760 0.80 +0.9 257,965 + DDA3937_RS21760 0.80 +0.6 257,966 - DDA3937_RS21760 0.81 -0.7 257,966 - DDA3937_RS21760 0.81 +2.4 257,966 - DDA3937_RS21760 0.81 +0.0 257,969 + DDA3937_RS21760 0.82 -1.4 257,969 + DDA3937_RS21760 0.82 +0.9 257,969 + DDA3937_RS21760 0.82 +2.9 257,969 + DDA3937_RS21760 0.82 +0.8 257,969 + DDA3937_RS21760 0.82 -1.7 257,969 + DDA3937_RS21760 0.82 -1.6 257,970 - DDA3937_RS21760 0.83 -0.5 257,970 - DDA3937_RS21760 0.83 +0.9 257,972 + DDA3937_RS21760 0.84 -1.8 257,972 + DDA3937_RS21760 0.84 +0.3 257,972 + DDA3937_RS21760 0.84 -3.8 257,972 + DDA3937_RS21760 0.84 +1.0 257,973 - DDA3937_RS21760 0.84 -1.8 257,973 - DDA3937_RS21760 0.84 -2.0 257,973 - DDA3937_RS21760 0.84 -1.6 257,973 - DDA3937_RS21760 0.84 +0.1 257,995 + +1.0 257,995 + -1.6 257,996 - -0.7 257,996 - -0.6 257,996 - -1.6 257,996 - +0.9 257,996 - +2.1 258,004 + -1.8 258,004 + +0.4 258,005 - +1.1 258,005 - -2.1 258,005 - -1.2 258,089 - -0.7 258,137 + +1.7 258,137 + -1.7 258,138 - -2.8 258,138 - -1.0
Or see this region's nucleotide sequence