Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00455

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
105,494	+				-0.7
105,494	+				+0.6
105,495	-				-3.2
105,560	+				-1.0
105,580	+				+0.6
105,580	+				+1.2
105,580	+				-3.2
105,581	-				-2.9
105,581	-				+1.0
105,614	+				-0.4
105,615	-				+0.3
105,633	+				-1.1
105,634	-				+3.4
105,634	-				-1.3
105,634	-				+1.0
105,639	+				+1.1
105,679	+				-1.7
105,679	+				-0.8
105,680	-				+0.0
105,680	-				+1.5
105,680	-				-0.5
105,680	-				-1.4
105,680	-				+0.0
105,680	-				+1.6
105,686	+				-2.0
105,687	-				-0.4
105,717	-		DDA3937_RS00450	0.12	-1.4
105,796	+		DDA3937_RS00450	0.23	+0.6
105,800	+		DDA3937_RS00450	0.24	+1.2
105,800	+		DDA3937_RS00450	0.24	+0.1
105,800	+		DDA3937_RS00450	0.24	+0.8
105,800	+		DDA3937_RS00450	0.24	+1.3
105,800	+		DDA3937_RS00450	0.24	+1.0
105,800	+		DDA3937_RS00450	0.24	+1.7
105,800	+		DDA3937_RS00450	0.24	+1.8
105,800	+		DDA3937_RS00450	0.24	+1.0
105,800	+		DDA3937_RS00450	0.24	-0.9
105,800	+		DDA3937_RS00450	0.24	-2.3
105,800	+		DDA3937_RS00450	0.24	+1.4
105,800	+		DDA3937_RS00450	0.24	+0.3
105,800	+		DDA3937_RS00450	0.24	+3.8
105,801	-		DDA3937_RS00450	0.24	+1.5
105,801	-		DDA3937_RS00450	0.24	-0.7
105,801	-		DDA3937_RS00450	0.24	+0.8
105,801	-		DDA3937_RS00450	0.24	+2.1
105,801	-		DDA3937_RS00450	0.24	-0.0
105,801	-		DDA3937_RS00450	0.24	-1.9
105,801	-		DDA3937_RS00450	0.24	+2.6
105,801	-		DDA3937_RS00450	0.24	-1.0
105,867	+		DDA3937_RS00450	0.33	-2.2
105,867	+		DDA3937_RS00450	0.33	-0.7
105,867	+		DDA3937_RS00450	0.33	-2.0
105,867	+		DDA3937_RS00450	0.33	-1.7
105,867	+		DDA3937_RS00450	0.33	-0.7
105,868	-		DDA3937_RS00450	0.33	+2.1
105,868	-		DDA3937_RS00450	0.33	-2.6
105,868	-		DDA3937_RS00450	0.33	-1.5
105,868	-		DDA3937_RS00450	0.33	+1.3
105,868	-		DDA3937_RS00450	0.33	-0.8
105,868	-		DDA3937_RS00450	0.33	-0.4
105,868	-		DDA3937_RS00450	0.33	-0.3
105,871	+		DDA3937_RS00450	0.33	+0.1
105,896	+		DDA3937_RS00450	0.37	+0.0
105,896	+		DDA3937_RS00450	0.37	-0.8
105,896	+		DDA3937_RS00450	0.37	-0.3
105,896	+		DDA3937_RS00450	0.37	-2.4
105,896	+		DDA3937_RS00450	0.37	+0.0
105,896	+		DDA3937_RS00450	0.37	+1.3
105,896	+		DDA3937_RS00450	0.37	-0.2
105,896	+		DDA3937_RS00450	0.37	-3.2
105,896	+		DDA3937_RS00450	0.37	+0.6
105,896	+		DDA3937_RS00450	0.37	-1.3
105,896	+		DDA3937_RS00450	0.37	-2.8
105,896	+		DDA3937_RS00450	0.37	-1.2
105,897	-		DDA3937_RS00450	0.37	-1.4
105,897	-		DDA3937_RS00450	0.37	-0.2
105,897	-		DDA3937_RS00450	0.37	-2.3
105,935	+		DDA3937_RS00450	0.42	-1.2
105,936	-		DDA3937_RS00450	0.42	+0.5
106,060	+		DDA3937_RS00450	0.60	-0.1
106,080	+		DDA3937_RS00450	0.62	+0.2
106,081	-		DDA3937_RS00450	0.63	+0.6
106,224	-		DDA3937_RS00450	0.82	+0.6
106,232	+		DDA3937_RS00450	0.83	-2.5
106,232	+		DDA3937_RS00450	0.83	+0.4
106,233	-		DDA3937_RS00450	0.84	+0.3
106,259	-		DDA3937_RS00450	0.87	+0.5
106,295	+				-1.7
106,295	+				+0.5
106,349	+				+1.0
106,350	-				-0.1
106,400	+				+2.2
106,400	+				-1.4
106,439	+				-0.2
106,440	-				-1.0
106,458	+				-2.5
106,458	+				+0.5
106,458	+				-0.4
106,459	-				-0.6
106,635	+		DDA3937_RS00455	0.13	+1.5
106,636	-		DDA3937_RS00455	0.13	+1.2
106,636	-		DDA3937_RS00455	0.13	+1.0
106,647	+		DDA3937_RS00455	0.14	-3.3
106,648	-		DDA3937_RS00455	0.14	+0.4
106,648	-		DDA3937_RS00455	0.14	+0.2
106,710	+		DDA3937_RS00455	0.19	-0.2
106,724	+		DDA3937_RS00455	0.20	-2.4
106,752	+		DDA3937_RS00455	0.22	+2.6
106,752	+		DDA3937_RS00455	0.22	-1.8
106,752	+		DDA3937_RS00455	0.22	-1.5
106,752	+		DDA3937_RS00455	0.22	+0.3
106,752	+		DDA3937_RS00455	0.22	-1.0
106,753	-		DDA3937_RS00455	0.22	-1.8
106,753	-		DDA3937_RS00455	0.22	-3.0
106,753	-		DDA3937_RS00455	0.22	-2.5
106,809	+		DDA3937_RS00455	0.26	+0.8
106,810	-		DDA3937_RS00455	0.26	-2.5
106,810	-		DDA3937_RS00455	0.26	-1.0
106,904	-		DDA3937_RS00455	0.33	-1.2
107,144	+		DDA3937_RS00455	0.51	+0.8
107,157	+		DDA3937_RS00455	0.52	+2.2
107,158	-		DDA3937_RS00455	0.52	-0.8
107,158	-		DDA3937_RS00455	0.52	+0.1
107,158	-		DDA3937_RS00455	0.52	-1.1
107,158	-		DDA3937_RS00455	0.52	+3.3
107,190	+		DDA3937_RS00455	0.55	-2.9
107,190	+		DDA3937_RS00455	0.55	-1.5
107,268	+		DDA3937_RS00455	0.60	-2.6
107,268	+		DDA3937_RS00455	0.60	+0.7
107,268	+		DDA3937_RS00455	0.60	+1.0
107,268	+		DDA3937_RS00455	0.60	+0.2
107,268	+		DDA3937_RS00455	0.60	+0.2
107,269	-				+0.6
107,269	-		DDA3937_RS00455	0.60	-3.0
107,269	-		DDA3937_RS00455	0.60	-1.0
107,277	+		DDA3937_RS00455	0.61	-1.5
107,277	+		DDA3937_RS00455	0.61	-0.4
107,278	-		DDA3937_RS00455	0.61	-1.0
107,331	-		DDA3937_RS00455	0.65	-1.5
107,396	-		DDA3937_RS00455	0.70	-0.0
107,406	-		DDA3937_RS00455	0.71	-1.2
107,496	+		DDA3937_RS00455	0.77	-1.8
107,577	+		DDA3937_RS00455	0.83	+0.0
107,577	+		DDA3937_RS00455	0.83	+0.0
107,577	+		DDA3937_RS00455	0.83	-0.6
107,578	-		DDA3937_RS00455	0.83	-2.5
107,578	-		DDA3937_RS00455	0.83	-3.5
107,603	-		DDA3937_RS00455	0.85	-1.2
107,605	+		DDA3937_RS00455	0.85	-1.2
107,606	-		DDA3937_RS00455	0.85	-1.2
107,606	-		DDA3937_RS00455	0.85	+0.6
107,606	-		DDA3937_RS00455	0.85	-2.1
107,606	-		DDA3937_RS00455	0.85	-3.6
107,606	-		DDA3937_RS00455	0.85	+0.3
107,649	+		DDA3937_RS00455	0.89	-1.5
107,723	+				-1.5
107,724	-				+1.3
107,802	-				-2.5
107,803	+				-0.8
107,803	+				-3.3
107,803	+				-0.3
107,804	-				-3.0
107,804	-				-1.6
107,817	+				-3.1
107,818	-				+0.4
107,825	+				-3.3
107,836	+				-1.7
107,836	+				-4.2
107,836	+				-2.1
107,837	-				-0.3
107,872	+				-0.4
107,873	-				-0.6
107,892	-				-0.2
107,912	+		DDA3937_RS23380	0.11	+2.9
107,912	+		DDA3937_RS23380	0.11	-0.5
107,912	+		DDA3937_RS23380	0.11	+0.0
107,912	+		DDA3937_RS23380	0.11	-3.3
107,912	+		DDA3937_RS23380	0.11	+0.2
107,912	+		DDA3937_RS23380	0.11	+2.0
107,912	+				+3.6
107,912	+		DDA3937_RS23380	0.11	-0.7
107,912	+		DDA3937_RS23380	0.11	+0.5
107,912	+		DDA3937_RS23380	0.11	-2.8
107,913	-		DDA3937_RS23380	0.12	-2.9
107,913	-		DDA3937_RS23380	0.12	+0.1
107,913	-		DDA3937_RS23380	0.12	-0.7
107,913	-		DDA3937_RS23380	0.12	-2.8
107,913	-		DDA3937_RS23380	0.12	-0.5
107,913	-		DDA3937_RS23380	0.12	-1.0
107,913	-				-1.0
107,913	-		DDA3937_RS23380	0.12	-2.0
107,913	-		DDA3937_RS23380	0.12	-1.4
107,913	-		DDA3937_RS23380	0.12	-0.2
107,913	-		DDA3937_RS23380	0.12	-1.0
107,914	+		DDA3937_RS23380	0.13	+2.5
107,914	+		DDA3937_RS23380	0.13	-1.5
107,915	-		DDA3937_RS23380	0.13	+1.1
107,915	-		DDA3937_RS23380	0.13	+1.0
107,932	-		DDA3937_RS23380	0.23	-0.5
107,944	+		DDA3937_RS23380	0.30	-0.8
108,011	-		DDA3937_RS23380	0.68	+1.8
108,019	+		DDA3937_RS23380	0.73	+0.1
108,019	+		DDA3937_RS23380	0.73	-2.0
108,020	-		DDA3937_RS23380	0.74	+1.1
108,020	-		DDA3937_RS23380	0.74	+0.4
108,035	+		DDA3937_RS23380	0.82	+1.4
108,045	-		DDA3937_RS23380	0.88	-0.1
108,097	+				+0.8
108,101	+				+1.0
108,156	+				-0.8
108,161	-				-1.2
108,207	+				+1.9
108,233	+				-3.1
108,234	-				-1.0
108,235	+				+3.3
108,235	+				-1.5
108,238	-				-1.2
108,342	+				-2.5
108,342	+				+1.1
108,342	+				+0.9
108,343	-				-1.8
108,372	+				-0.5
108,372	+				-0.7
108,398	+				-2.2
108,401	-				-0.5
108,401	-				+2.1
108,425	-				+1.4
108,452	-				-1.1
108,457	+				-1.8
108,457	+				-0.7
108,457	+				-0.4
108,457	+				-1.5
108,457	+				+0.2
108,457	+				-4.4
108,457	+				+0.1
108,457	+				+0.2
108,458	-				-2.5
108,458	-				-3.8
108,458	-				-2.4
108,458	-				-2.8
108,458	-				+0.6
108,458	-				-1.7
108,458	-				-1.8
108,485	+				-1.4
108,486	-				-2.4
108,521	-				-1.7
108,530	+				-0.2
108,530	+				+0.1
108,530	+				+3.2
108,530	+				-2.4
108,531	-				-1.4
108,566	+				-0.3
108,567	-				-1.4
108,567	-				+1.8
108,576	+				-3.0
108,576	+				+1.5
108,577	-				+0.2
108,577	-				-0.3
108,607	+				-3.9
108,607	+				+0.6
108,607	+				-0.1
108,607	+				-0.1
108,608	-				-1.0
108,639	+				-3.0
108,661	+				-1.0
108,672	+				+0.3
108,673	-				-3.5
108,673	-				+1.6
108,674	+				+1.5
108,704	-				-2.2
108,718	+				-1.0
108,718	+				+1.2
108,719	-				-2.0
108,719	-				-0.6
108,719	-				+1.3
108,719	-				-1.5
108,782	-				+0.4
108,782	-				-0.8
108,782	-				-1.1
108,794	+				-1.5
108,794	+				-0.8