Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00255 and DDA3937_RS00260 overlap by 8 nucleotides DDA3937_RS00260 and DDA3937_RS00265 are separated by 145 nucleotides
DDA3937_RS00255: DDA3937_RS00255 - extracellular solute-binding protein, at 60,403 to 61,683
_RS00255
DDA3937_RS00260: DDA3937_RS00260 - CehA/McbA family metallohydrolase, at 61,676 to 63,106
_RS00260
DDA3937_RS00265: DDA3937_RS00265 - arsenic resistance protein, at 63,252 to 64,259
_RS00265
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 60.730 kb on + strand, within DDA3937_RS00255 at 60.730 kb on + strand, within DDA3937_RS00255 at 60.730 kb on + strand, within DDA3937_RS00255 at 60.730 kb on + strand, within DDA3937_RS00255 at 60.730 kb on + strand, within DDA3937_RS00255 at 60.730 kb on + strand, within DDA3937_RS00255 at 60.731 kb on - strand, within DDA3937_RS00255 at 60.731 kb on - strand, within DDA3937_RS00255 at 60.732 kb on + strand, within DDA3937_RS00255 at 60.732 kb on + strand, within DDA3937_RS00255 at 60.733 kb on - strand, within DDA3937_RS00255 at 60.733 kb on - strand, within DDA3937_RS00255 at 60.844 kb on + strand, within DDA3937_RS00255 at 60.844 kb on + strand, within DDA3937_RS00255 at 60.845 kb on - strand, within DDA3937_RS00255 at 60.847 kb on + strand, within DDA3937_RS00255 at 60.847 kb on + strand, within DDA3937_RS00255 at 60.847 kb on + strand, within DDA3937_RS00255 at 60.847 kb on + strand, within DDA3937_RS00255 at 60.848 kb on - strand, within DDA3937_RS00255 at 60.848 kb on - strand, within DDA3937_RS00255 at 60.965 kb on - strand, within DDA3937_RS00255 at 60.967 kb on + strand, within DDA3937_RS00255 at 61.134 kb on + strand, within DDA3937_RS00255 at 61.134 kb on + strand, within DDA3937_RS00255 at 61.134 kb on + strand, within DDA3937_RS00255 at 61.135 kb on - strand, within DDA3937_RS00255 at 61.135 kb on - strand, within DDA3937_RS00255 at 61.135 kb on - strand, within DDA3937_RS00255 at 61.135 kb on - strand, within DDA3937_RS00255 at 61.135 kb on - strand, within DDA3937_RS00255 at 61.138 kb on + strand, within DDA3937_RS00255 at 61.138 kb on + strand, within DDA3937_RS00255 at 61.138 kb on + strand, within DDA3937_RS00255 at 61.138 kb on + strand, within DDA3937_RS00255 at 61.138 kb on + strand, within DDA3937_RS00255 at 61.138 kb on + strand, within DDA3937_RS00255 at 61.139 kb on - strand, within DDA3937_RS00255 at 61.139 kb on - strand, within DDA3937_RS00255 at 61.139 kb on - strand, within DDA3937_RS00255 at 61.139 kb on - strand, within DDA3937_RS00255 at 61.139 kb on - strand, within DDA3937_RS00255 at 61.162 kb on + strand, within DDA3937_RS00255 at 61.163 kb on - strand, within DDA3937_RS00255 at 61.168 kb on + strand, within DDA3937_RS00255 at 61.168 kb on + strand, within DDA3937_RS00255 at 61.169 kb on - strand, within DDA3937_RS00255 at 61.170 kb on + strand, within DDA3937_RS00255 at 61.170 kb on + strand, within DDA3937_RS00255 at 61.170 kb on + strand, within DDA3937_RS00255 at 61.170 kb on + strand, within DDA3937_RS00255 at 61.170 kb on + strand, within DDA3937_RS00255 at 61.170 kb on + strand, within DDA3937_RS00255 at 61.170 kb on + strand, within DDA3937_RS00255 at 61.170 kb on + strand, within DDA3937_RS00255 at 61.171 kb on - strand, within DDA3937_RS00255 at 61.211 kb on - strand, within DDA3937_RS00255 at 61.374 kb on + strand, within DDA3937_RS00255 at 61.375 kb on - strand, within DDA3937_RS00255 at 61.375 kb on - strand, within DDA3937_RS00255 at 61.384 kb on + strand, within DDA3937_RS00255 at 61.384 kb on + strand, within DDA3937_RS00255 at 61.385 kb on - strand, within DDA3937_RS00255 at 61.429 kb on + strand, within DDA3937_RS00255 at 61.429 kb on + strand, within DDA3937_RS00255 at 61.429 kb on + strand, within DDA3937_RS00255 at 61.430 kb on - strand, within DDA3937_RS00255 at 61.430 kb on - strand, within DDA3937_RS00255 at 61.430 kb on - strand, within DDA3937_RS00255 at 61.430 kb on - strand, within DDA3937_RS00255 at 61.431 kb on + strand, within DDA3937_RS00255 at 61.431 kb on + strand, within DDA3937_RS00255 at 61.431 kb on + strand, within DDA3937_RS00255 at 61.432 kb on - strand, within DDA3937_RS00255 at 61.469 kb on - strand, within DDA3937_RS00255 at 61.477 kb on + strand, within DDA3937_RS00255 at 61.477 kb on + strand, within DDA3937_RS00255 at 61.477 kb on + strand, within DDA3937_RS00255 at 61.477 kb on + strand, within DDA3937_RS00255 at 61.682 kb on - strand at 61.731 kb on + strand at 61.732 kb on - strand at 61.796 kb on + strand at 61.797 kb on - strand at 61.797 kb on - strand at 61.802 kb on + strand at 61.802 kb on + strand at 61.803 kb on - strand at 61.864 kb on + strand, within DDA3937_RS00260 at 61.864 kb on + strand, within DDA3937_RS00260 at 61.865 kb on - strand, within DDA3937_RS00260 at 61.911 kb on + strand, within DDA3937_RS00260 at 61.994 kb on + strand, within DDA3937_RS00260 at 61.994 kb on + strand, within DDA3937_RS00260 at 61.994 kb on + strand, within DDA3937_RS00260 at 62.218 kb on + strand, within DDA3937_RS00260 at 62.218 kb on + strand, within DDA3937_RS00260 at 62.218 kb on + strand, within DDA3937_RS00260 at 62.218 kb on + strand, within DDA3937_RS00260 at 62.219 kb on - strand, within DDA3937_RS00260 at 62.219 kb on - strand, within DDA3937_RS00260 at 62.219 kb on - strand, within DDA3937_RS00260 at 62.236 kb on + strand, within DDA3937_RS00260 at 62.236 kb on + strand, within DDA3937_RS00260 at 62.236 kb on + strand, within DDA3937_RS00260 at 62.236 kb on + strand, within DDA3937_RS00260 at 62.236 kb on + strand, within DDA3937_RS00260 at 62.236 kb on + strand, within DDA3937_RS00260 at 62.236 kb on + strand at 62.237 kb on - strand, within DDA3937_RS00260 at 62.237 kb on - strand, within DDA3937_RS00260 at 62.237 kb on - strand, within DDA3937_RS00260 at 62.237 kb on - strand, within DDA3937_RS00260 at 62.596 kb on + strand, within DDA3937_RS00260 at 62.645 kb on + strand, within DDA3937_RS00260 at 62.753 kb on + strand, within DDA3937_RS00260 at 62.753 kb on + strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.873 kb on + strand, within DDA3937_RS00260 at 62.873 kb on + strand, within DDA3937_RS00260 at 62.873 kb on + strand, within DDA3937_RS00260 at 63.029 kb on + strand at 63.029 kb on + strand at 63.029 kb on + strand at 63.029 kb on + strand at 63.030 kb on - strand at 63.030 kb on - strand at 63.030 kb on - strand at 63.200 kb on + strand at 63.208 kb on + strand at 63.208 kb on + strand at 63.209 kb on - strand at 63.209 kb on - strand at 63.209 kb on - strand at 63.209 kb on - strand at 63.265 kb on + strand at 63.265 kb on + strand at 63.265 kb on + strand at 63.265 kb on + strand at 63.266 kb on - strand at 63.266 kb on - strand at 63.268 kb on + strand at 63.268 kb on + strand at 63.268 kb on + strand at 63.312 kb on + strand at 63.313 kb on - strand at 63.417 kb on - strand, within DDA3937_RS00265 at 63.473 kb on + strand, within DDA3937_RS00265 at 63.473 kb on + strand, within DDA3937_RS00265 at 63.473 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand at 63.580 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand, within DDA3937_RS00265 at 63.581 kb on - strand, within DDA3937_RS00265 at 63.581 kb on - strand, within DDA3937_RS00265 at 63.581 kb on - strand, within DDA3937_RS00265 at 63.603 kb on + strand, within DDA3937_RS00265 at 63.603 kb on + strand, within DDA3937_RS00265 at 63.603 kb on + strand, within DDA3937_RS00265 at 63.603 kb on + strand, within DDA3937_RS00265 at 63.604 kb on - strand, within DDA3937_RS00265 at 63.604 kb on - strand, within DDA3937_RS00265 at 63.604 kb on - strand, within DDA3937_RS00265 at 63.604 kb on - strand, within DDA3937_RS00265 at 63.646 kb on + strand, within DDA3937_RS00265 at 63.647 kb on - strand, within DDA3937_RS00265 at 63.647 kb on - strand, within DDA3937_RS00265 at 63.668 kb on - strand, within DDA3937_RS00265 at 63.832 kb on - strand at 63.973 kb on - strand, within DDA3937_RS00265 at 63.973 kb on - strand, within DDA3937_RS00265 at 64.024 kb on + strand, within DDA3937_RS00265 at 64.024 kb on + strand, within DDA3937_RS00265 at 64.024 kb on + strand, within DDA3937_RS00265 at 64.024 kb on + strand, within DDA3937_RS00265 at 64.025 kb on - strand, within DDA3937_RS00265 at 64.097 kb on - strand, within DDA3937_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 60,730 + DDA3937_RS00255 0.26 -2.1 60,730 + DDA3937_RS00255 0.26 -0.1 60,730 + DDA3937_RS00255 0.26 +0.6 60,730 + DDA3937_RS00255 0.26 -1.8 60,730 + DDA3937_RS00255 0.26 +1.0 60,730 + DDA3937_RS00255 0.26 -2.6 60,731 - DDA3937_RS00255 0.26 -2.5 60,731 - DDA3937_RS00255 0.26 +0.3 60,732 + DDA3937_RS00255 0.26 +0.5 60,732 + DDA3937_RS00255 0.26 +0.4 60,733 - DDA3937_RS00255 0.26 +0.2 60,733 - DDA3937_RS00255 0.26 -1.2 60,844 + DDA3937_RS00255 0.34 +0.0 60,844 + DDA3937_RS00255 0.34 +0.6 60,845 - DDA3937_RS00255 0.35 -0.3 60,847 + DDA3937_RS00255 0.35 -0.2 60,847 + DDA3937_RS00255 0.35 +1.5 60,847 + DDA3937_RS00255 0.35 +2.0 60,847 + DDA3937_RS00255 0.35 +0.7 60,848 - DDA3937_RS00255 0.35 +1.2 60,848 - DDA3937_RS00255 0.35 -3.2 60,965 - DDA3937_RS00255 0.44 -1.2 60,967 + DDA3937_RS00255 0.44 +1.4 61,134 + DDA3937_RS00255 0.57 +1.9 61,134 + DDA3937_RS00255 0.57 +1.2 61,134 + DDA3937_RS00255 0.57 +2.5 61,135 - DDA3937_RS00255 0.57 +1.5 61,135 - DDA3937_RS00255 0.57 -0.7 61,135 - DDA3937_RS00255 0.57 +0.3 61,135 - DDA3937_RS00255 0.57 -1.2 61,135 - DDA3937_RS00255 0.57 -0.3 61,138 + DDA3937_RS00255 0.57 -0.2 61,138 + DDA3937_RS00255 0.57 +0.8 61,138 + DDA3937_RS00255 0.57 +1.1 61,138 + DDA3937_RS00255 0.57 +0.9 61,138 + DDA3937_RS00255 0.57 +2.3 61,138 + DDA3937_RS00255 0.57 -1.3 61,139 - DDA3937_RS00255 0.57 +1.8 61,139 - DDA3937_RS00255 0.57 -2.8 61,139 - DDA3937_RS00255 0.57 -2.2 61,139 - DDA3937_RS00255 0.57 -0.4 61,139 - DDA3937_RS00255 0.57 -1.7 61,162 + DDA3937_RS00255 0.59 +1.3 61,163 - DDA3937_RS00255 0.59 -0.8 61,168 + DDA3937_RS00255 0.60 -0.4 61,168 + DDA3937_RS00255 0.60 -0.1 61,169 - DDA3937_RS00255 0.60 -1.4 61,170 + DDA3937_RS00255 0.60 +3.3 61,170 + DDA3937_RS00255 0.60 +1.0 61,170 + DDA3937_RS00255 0.60 +0.7 61,170 + DDA3937_RS00255 0.60 -0.5 61,170 + DDA3937_RS00255 0.60 +0.5 61,170 + DDA3937_RS00255 0.60 +2.2 61,170 + DDA3937_RS00255 0.60 -2.0 61,170 + DDA3937_RS00255 0.60 +0.0 61,171 - DDA3937_RS00255 0.60 +0.2 61,211 - DDA3937_RS00255 0.63 -0.7 61,374 + DDA3937_RS00255 0.76 -1.0 61,375 - DDA3937_RS00255 0.76 +0.7 61,375 - DDA3937_RS00255 0.76 +1.3 61,384 + DDA3937_RS00255 0.77 -1.4 61,384 + DDA3937_RS00255 0.77 +0.5 61,385 - DDA3937_RS00255 0.77 +0.7 61,429 + DDA3937_RS00255 0.80 +1.2 61,429 + DDA3937_RS00255 0.80 -3.5 61,429 + DDA3937_RS00255 0.80 +0.7 61,430 - DDA3937_RS00255 0.80 +0.4 61,430 - DDA3937_RS00255 0.80 -0.8 61,430 - DDA3937_RS00255 0.80 -1.5 61,430 - DDA3937_RS00255 0.80 +0.7 61,431 + DDA3937_RS00255 0.80 -0.0 61,431 + DDA3937_RS00255 0.80 -2.8 61,431 + DDA3937_RS00255 0.80 +1.0 61,432 - DDA3937_RS00255 0.80 +0.6 61,469 - DDA3937_RS00255 0.83 -0.4 61,477 + DDA3937_RS00255 0.84 -2.2 61,477 + DDA3937_RS00255 0.84 +0.7 61,477 + DDA3937_RS00255 0.84 -0.8 61,477 + DDA3937_RS00255 0.84 -1.9 61,682 - -1.0 61,731 + -0.0 61,732 - +1.2 61,796 + +0.8 61,797 - -3.3 61,797 - -2.1 61,802 + +0.6 61,802 + +1.0 61,803 - +0.3 61,864 + DDA3937_RS00260 0.13 +2.2 61,864 + DDA3937_RS00260 0.13 +0.0 61,865 - DDA3937_RS00260 0.13 -0.8 61,911 + DDA3937_RS00260 0.16 +0.9 61,994 + DDA3937_RS00260 0.22 -1.1 61,994 + DDA3937_RS00260 0.22 -2.4 61,994 + DDA3937_RS00260 0.22 +1.1 62,218 + DDA3937_RS00260 0.38 +2.4 62,218 + DDA3937_RS00260 0.38 -2.7 62,218 + DDA3937_RS00260 0.38 +1.6 62,218 + DDA3937_RS00260 0.38 -2.0 62,219 - DDA3937_RS00260 0.38 -0.5 62,219 - DDA3937_RS00260 0.38 -0.4 62,219 - DDA3937_RS00260 0.38 +0.7 62,236 + DDA3937_RS00260 0.39 -0.3 62,236 + DDA3937_RS00260 0.39 -0.2 62,236 + DDA3937_RS00260 0.39 +0.6 62,236 + DDA3937_RS00260 0.39 -1.7 62,236 + DDA3937_RS00260 0.39 -0.2 62,236 + DDA3937_RS00260 0.39 +0.1 62,236 + +1.6 62,237 - DDA3937_RS00260 0.39 +0.1 62,237 - DDA3937_RS00260 0.39 -1.6 62,237 - DDA3937_RS00260 0.39 -0.2 62,237 - DDA3937_RS00260 0.39 -1.5 62,596 + DDA3937_RS00260 0.64 +0.7 62,645 + DDA3937_RS00260 0.68 +1.2 62,753 + DDA3937_RS00260 0.75 -1.7 62,753 + DDA3937_RS00260 0.75 +0.5 62,754 - DDA3937_RS00260 0.75 +0.0 62,754 - DDA3937_RS00260 0.75 +1.4 62,754 - DDA3937_RS00260 0.75 -0.4 62,754 - DDA3937_RS00260 0.75 +0.4 62,754 - DDA3937_RS00260 0.75 +0.0 62,873 + DDA3937_RS00260 0.84 -1.0 62,873 + DDA3937_RS00260 0.84 +0.2 62,873 + DDA3937_RS00260 0.84 -0.0 63,029 + +0.1 63,029 + +1.4 63,029 + -2.7 63,029 + +1.0 63,030 - +0.3 63,030 - -1.7 63,030 - -2.5 63,200 + -2.1 63,208 + -2.9 63,208 + +0.0 63,209 - -0.0 63,209 - -0.0 63,209 - -1.2 63,209 - -1.1 63,265 + +1.4 63,265 + -0.2 63,265 + -1.1 63,265 + +0.3 63,266 - -1.7 63,266 - -0.4 63,268 + +1.8 63,268 + +0.9 63,268 + +0.7 63,312 + +0.4 63,313 - -0.7 63,417 - DDA3937_RS00265 0.16 -0.7 63,473 + DDA3937_RS00265 0.22 +0.5 63,473 + DDA3937_RS00265 0.22 +1.2 63,473 + DDA3937_RS00265 0.22 -0.2 63,580 + -0.4 63,580 + DDA3937_RS00265 0.33 +2.8 63,580 + DDA3937_RS00265 0.33 +0.7 63,580 + DDA3937_RS00265 0.33 -2.4 63,580 + DDA3937_RS00265 0.33 -0.1 63,580 + DDA3937_RS00265 0.33 -0.3 63,581 - DDA3937_RS00265 0.33 -0.7 63,581 - DDA3937_RS00265 0.33 -0.8 63,581 - DDA3937_RS00265 0.33 -0.2 63,603 + DDA3937_RS00265 0.35 -1.2 63,603 + DDA3937_RS00265 0.35 +0.0 63,603 + DDA3937_RS00265 0.35 -1.8 63,603 + DDA3937_RS00265 0.35 +2.0 63,604 - DDA3937_RS00265 0.35 -0.8 63,604 - DDA3937_RS00265 0.35 +1.8 63,604 - DDA3937_RS00265 0.35 -0.3 63,604 - DDA3937_RS00265 0.35 -3.0 63,646 + DDA3937_RS00265 0.39 -1.5 63,647 - DDA3937_RS00265 0.39 +0.3 63,647 - DDA3937_RS00265 0.39 +1.6 63,668 - DDA3937_RS00265 0.41 -0.7 63,832 - +1.0 63,973 - DDA3937_RS00265 0.72 -1.0 63,973 - DDA3937_RS00265 0.72 +3.3 64,024 + DDA3937_RS00265 0.77 +0.3 64,024 + DDA3937_RS00265 0.77 +0.1 64,024 + DDA3937_RS00265 0.77 -0.9 64,024 + DDA3937_RS00265 0.77 -0.2 64,025 - DDA3937_RS00265 0.77 -2.3 64,097 - DDA3937_RS00265 0.84 +0.1
Or see this region's nucleotide sequence