Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22240

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,523,569	+		DDA3937_RS11140	0.55	+2.1
2,523,571	+		DDA3937_RS11140	0.56	+2.1
2,523,571	+		DDA3937_RS11140	0.56	-0.3
2,523,571	+		DDA3937_RS11140	0.56	-1.1
2,523,571	+		DDA3937_RS11140	0.56	+0.7
2,523,571	+		DDA3937_RS11140	0.56	-2.0
2,523,572	-		DDA3937_RS11140	0.56	-1.8
2,523,572	-		DDA3937_RS11140	0.56	+3.2
2,523,572	-		DDA3937_RS11140	0.56	+0.8
2,523,572	-		DDA3937_RS11140	0.56	-0.8
2,523,572	-				+0.5
2,523,572	-		DDA3937_RS11140	0.56	+1.0
2,523,624	-		DDA3937_RS11140	0.61	-0.5
2,523,624	-		DDA3937_RS11140	0.61	+1.0
2,523,635	+		DDA3937_RS11140	0.63	+0.7
2,523,635	+		DDA3937_RS11140	0.63	-0.8
2,523,635	+		DDA3937_RS11140	0.63	-0.2
2,523,635	+		DDA3937_RS11140	0.63	-2.4
2,523,635	+		DDA3937_RS11140	0.63	-2.0
2,523,635	+		DDA3937_RS11140	0.63	+3.1
2,523,635	+		DDA3937_RS11140	0.63	-2.4
2,523,635	+		DDA3937_RS11140	0.63	-1.7
2,523,635	+		DDA3937_RS11140	0.63	-0.5
2,523,635	+		DDA3937_RS11140	0.63	-2.5
2,523,635	+		DDA3937_RS11140	0.63	-0.1
2,523,636	-		DDA3937_RS11140	0.63	+0.5
2,523,636	-		DDA3937_RS11140	0.63	-1.1
2,523,636	-		DDA3937_RS11140	0.63	+0.7
2,523,636	-		DDA3937_RS11140	0.63	+0.5
2,523,636	-		DDA3937_RS11140	0.63	+1.7
2,523,636	-		DDA3937_RS11140	0.63	+1.5
2,523,636	-		DDA3937_RS11140	0.63	-1.7
2,523,636	-		DDA3937_RS11140	0.63	-2.0
2,523,636	-		DDA3937_RS11140	0.63	+1.2
2,523,636	-		DDA3937_RS11140	0.63	-0.1
2,523,636	-		DDA3937_RS11140	0.63	-0.1
2,523,636	-		DDA3937_RS11140	0.63	-1.5
2,523,636	-		DDA3937_RS11140	0.63	+1.9
2,523,636	-		DDA3937_RS11140	0.63	+2.9
2,523,636	-		DDA3937_RS11140	0.63	+0.6
2,523,637	+		DDA3937_RS11140	0.63	+0.4
2,523,637	+		DDA3937_RS11140	0.63	-0.5
2,523,637	+		DDA3937_RS11140	0.63	-1.6
2,523,637	+		DDA3937_RS11140	0.63	+0.2
2,523,637	+		DDA3937_RS11140	0.63	-1.1
2,523,638	-		DDA3937_RS11140	0.63	+1.6
2,523,638	-		DDA3937_RS11140	0.63	-1.3
2,523,638	-		DDA3937_RS11140	0.63	-1.1
2,523,702	+		DDA3937_RS11140	0.70	-1.3
2,523,711	+		DDA3937_RS11140	0.71	-2.9
2,523,712	-		DDA3937_RS11140	0.71	-0.1
2,523,712	-		DDA3937_RS11140	0.71	-1.7
2,523,767	-		DDA3937_RS11140	0.77	+3.3
2,523,806	+		DDA3937_RS11140	0.81	-2.2
2,523,830	+		DDA3937_RS11140	0.84	-0.8
2,523,831	-		DDA3937_RS11140	0.84	+0.2
2,523,931	+				+0.3
2,523,931	+				-0.8
2,523,932	-				-1.1
2,523,932	-				-1.6
2,523,932	-				-1.8
2,523,932	-				+1.0
2,523,953	+				-0.8
2,523,964	+				-0.1
2,523,964	+				-0.8
2,523,964	+				-0.5
2,523,965	-				+0.8
2,523,965	-				-1.1
2,523,965	-				+0.5
2,523,965	-				-2.4
2,523,965	-				-0.8
2,523,965	-				-0.8
2,523,965	-				-0.4
2,523,968	+				+2.1
2,523,968	+				+1.7
2,523,969	-				-0.1
2,524,157	+				+0.7
2,524,157	+				-0.5
2,524,157	+				+1.3
2,524,158	-				+0.7
2,524,158	-				-0.8
2,524,158	-				-2.8
2,524,271	-				+0.6
2,524,328	+				-1.3
2,524,328	+				-2.0
2,524,329	-				-1.0
2,524,377	-				+1.4
2,524,427	+				+1.8
2,524,427	+				+1.8
2,524,427	+				+0.9
2,524,427	+				+0.5
2,524,427	+				+1.6
2,524,427	+				-2.9
2,524,427	+				+0.2
2,524,427	+				-1.8
2,524,428	-				+0.3
2,524,428	-				+0.2
2,524,677	-		DDA3937_RS22240	0.35	-1.3
2,524,677	-		DDA3937_RS22240	0.35	+0.5
2,524,695	+		DDA3937_RS22240	0.40	-0.1
2,524,695	+		DDA3937_RS22240	0.40	-0.4
2,524,775	+		DDA3937_RS22240	0.66	-1.7
2,524,826	+		DDA3937_RS22240	0.82	-1.7
2,524,826	+		DDA3937_RS22240	0.82	-0.8
2,524,827	-		DDA3937_RS22240	0.82	+0.6
2,524,827	-				+1.1
2,524,827	-		DDA3937_RS22240	0.82	-2.1
2,524,853	+				+0.5
2,524,912	+		DDA3937_RS11145	0.13	-0.7
2,525,071	+		DDA3937_RS11145	0.73	-2.4
2,525,071	+		DDA3937_RS11145	0.73	+1.3
2,525,099	+		DDA3937_RS11145	0.84	-1.6
2,525,099	+		DDA3937_RS11145	0.84	-1.0
2,525,113	+		DDA3937_RS11145	0.89	-2.1
2,525,114	-		DDA3937_RS11145	0.89	-0.1
2,525,114	-		DDA3937_RS11145	0.89	-0.8
2,525,122	-				-0.5
2,525,130	-				+0.4
2,525,145	+				-0.2
2,525,146	-				-0.8
2,525,164	+				-0.8
2,525,168	-				+1.9
2,525,171	+				+0.2
2,525,172	-				-1.7
2,525,174	+				-3.1
2,525,301	+		DDA3937_RS11150	0.30	+0.5
2,525,301	+		DDA3937_RS11150	0.30	+0.0
2,525,345	+		DDA3937_RS11150	0.40	+2.5
2,525,421	+		DDA3937_RS11150	0.58	-0.6
2,525,421	+		DDA3937_RS11150	0.58	-2.8
2,525,421	+		DDA3937_RS11150	0.58	-2.6
2,525,421	+		DDA3937_RS11150	0.58	-2.1
2,525,421	+		DDA3937_RS11150	0.58	-0.1
2,525,421	+		DDA3937_RS11150	0.58	+1.5
2,525,421	+		DDA3937_RS11150	0.58	+1.8
2,525,421	+		DDA3937_RS11150	0.58	-0.2
2,525,421	+		DDA3937_RS11150	0.58	-0.8
2,525,421	+		DDA3937_RS11150	0.58	+0.7
2,525,421	+		DDA3937_RS11150	0.58	-1.4
2,525,421	+				-0.1
2,525,421	+		DDA3937_RS11150	0.58	+0.1
2,525,421	+		DDA3937_RS11150	0.58	-2.2
2,525,421	+		DDA3937_RS11150	0.58	-0.8
2,525,422	-		DDA3937_RS11150	0.59	+0.7
2,525,422	-		DDA3937_RS11150	0.59	-0.8
2,525,422	-		DDA3937_RS11150	0.59	-0.8
2,525,422	-		DDA3937_RS11150	0.59	+1.6
2,525,422	-		DDA3937_RS11150	0.59	+1.4
2,525,422	-		DDA3937_RS11150	0.59	+2.2
2,525,422	-		DDA3937_RS11150	0.59	-1.5
2,525,422	-		DDA3937_RS11150	0.59	+1.2
2,525,422	-		DDA3937_RS11150	0.59	-0.8
2,525,489	+		DDA3937_RS11150	0.75	-0.0
2,525,489	+		DDA3937_RS11150	0.75	+3.0
2,525,489	+		DDA3937_RS11150	0.75	+1.8
2,525,489	+		DDA3937_RS11150	0.75	+0.6
2,525,489	+		DDA3937_RS11150	0.75	+1.5
2,525,489	+		DDA3937_RS11150	0.75	-2.5
2,525,490	-		DDA3937_RS11150	0.75	-1.1
2,525,490	-		DDA3937_RS11150	0.75	+0.1
2,525,490	-		DDA3937_RS11150	0.75	-2.0
2,525,490	-		DDA3937_RS11150	0.75	-1.5
2,525,490	-				+0.5
2,525,652	+		DDA3937_RS11155	0.26	-0.2
2,525,840	-				-0.2