Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21595 and DDA3937_RS21600 are separated by 620 nucleotides DDA3937_RS21600 and DDA3937_RS21605 are separated by 76 nucleotides
DDA3937_RS21595: DDA3937_RS21595 - F0F1 ATP synthase subunit I, at 4,918,864 to 4,919,247
_RS21595
DDA3937_RS21600: DDA3937_RS21600 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 4,919,868 to 4,920,488
_RS21600
DDA3937_RS21605: DDA3937_RS21605 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 4,920,565 to 4,922,454
_RS21605
Position (kb) 4919
4920
4921 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4918.870 kb on - strand at 4918.870 kb on - strand at 4918.870 kb on - strand at 4918.882 kb on - strand at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4919.084 kb on - strand, within DDA3937_RS21595 at 4919.084 kb on - strand, within DDA3937_RS21595 at 4919.240 kb on - strand at 4919.275 kb on - strand at 4919.275 kb on - strand at 4919.275 kb on - strand at 4919.292 kb on - strand at 4919.292 kb on - strand at 4919.370 kb on - strand at 4919.370 kb on - strand at 4919.373 kb on + strand at 4919.392 kb on + strand at 4919.396 kb on + strand at 4919.476 kb on + strand at 4919.477 kb on - strand at 4919.483 kb on + strand at 4919.484 kb on - strand at 4919.515 kb on - strand at 4919.516 kb on + strand at 4919.516 kb on + strand at 4919.665 kb on - strand at 4919.711 kb on - strand at 4919.741 kb on - strand at 4919.748 kb on + strand at 4919.748 kb on + strand at 4919.749 kb on - strand at 4919.750 kb on + strand at 4919.750 kb on + strand at 4919.750 kb on + strand at 4919.750 kb on + strand at 4919.751 kb on - strand at 4919.751 kb on - strand at 4919.751 kb on - strand at 4919.764 kb on - strand at 4919.789 kb on - strand at 4919.800 kb on + strand at 4919.815 kb on + strand at 4919.816 kb on - strand at 4919.832 kb on + strand at 4919.838 kb on + strand at 4919.839 kb on - strand at 4919.839 kb on - strand at 4919.856 kb on + strand at 4919.856 kb on + strand at 4919.879 kb on + strand at 4919.879 kb on + strand at 4919.880 kb on - strand at 4919.880 kb on - strand at 4919.880 kb on - strand at 4920.001 kb on + strand, within DDA3937_RS21600 at 4920.001 kb on + strand, within DDA3937_RS21600 at 4920.246 kb on + strand, within DDA3937_RS21600 at 4920.246 kb on + strand, within DDA3937_RS21600 at 4920.246 kb on + strand, within DDA3937_RS21600 at 4920.247 kb on - strand, within DDA3937_RS21600 at 4920.247 kb on - strand, within DDA3937_RS21600 at 4920.247 kb on - strand, within DDA3937_RS21600 at 4920.329 kb on + strand, within DDA3937_RS21600 at 4920.329 kb on + strand, within DDA3937_RS21600 at 4920.330 kb on - strand, within DDA3937_RS21600 at 4920.375 kb on - strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.377 kb on - strand, within DDA3937_RS21600 at 4920.377 kb on - strand, within DDA3937_RS21600 at 4920.377 kb on - strand, within DDA3937_RS21600 at 4920.377 kb on - strand, within DDA3937_RS21600 at 4920.399 kb on + strand, within DDA3937_RS21600 at 4920.399 kb on + strand, within DDA3937_RS21600 at 4920.399 kb on + strand, within DDA3937_RS21600 at 4920.409 kb on + strand, within DDA3937_RS21600 at 4920.409 kb on + strand, within DDA3937_RS21600 at 4920.409 kb on + strand, within DDA3937_RS21600 at 4920.409 kb on + strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.462 kb on + strand at 4920.462 kb on + strand at 4920.463 kb on - strand at 4920.463 kb on - strand at 4920.479 kb on + strand at 4920.549 kb on + strand at 4920.549 kb on + strand at 4920.550 kb on - strand at 4920.550 kb on - strand at 4920.550 kb on - strand at 4920.550 kb on - strand at 4920.550 kb on - strand at 4920.557 kb on - strand at 4920.585 kb on + strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.801 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand at 4920.803 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand at 4920.804 kb on - strand, within DDA3937_RS21605 at 4920.896 kb on + strand, within DDA3937_RS21605 at 4920.980 kb on - strand, within DDA3937_RS21605 at 4921.229 kb on + strand, within DDA3937_RS21605 at 4921.230 kb on - strand, within DDA3937_RS21605 at 4921.230 kb on - strand, within DDA3937_RS21605 at 4921.230 kb on - strand, within DDA3937_RS21605 at 4921.230 kb on - strand, within DDA3937_RS21605 at 4921.415 kb on + strand at 4921.416 kb on - strand, within DDA3937_RS21605 at 4921.421 kb on + strand, within DDA3937_RS21605 at 4921.422 kb on - strand, within DDA3937_RS21605 at 4921.473 kb on + strand, within DDA3937_RS21605
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,918,870 - -1.3 4,918,870 - -0.3 4,918,870 - -0.3 4,918,882 - -1.6 4,918,922 - DDA3937_RS21595 0.15 -0.3 4,918,922 - DDA3937_RS21595 0.15 -1.3 4,918,922 - DDA3937_RS21595 0.15 -2.0 4,918,922 - DDA3937_RS21595 0.15 -0.3 4,918,922 - DDA3937_RS21595 0.15 -2.6 4,918,922 - DDA3937_RS21595 0.15 -3.7 4,918,922 - -0.6 4,918,926 - DDA3937_RS21595 0.16 -1.1 4,918,926 - DDA3937_RS21595 0.16 -0.9 4,918,926 - DDA3937_RS21595 0.16 -2.7 4,918,926 - DDA3937_RS21595 0.16 -3.0 4,918,926 - DDA3937_RS21595 0.16 -0.9 4,918,926 - DDA3937_RS21595 0.16 -2.4 4,919,084 - DDA3937_RS21595 0.57 -2.2 4,919,084 - DDA3937_RS21595 0.57 +0.3 4,919,240 - -0.3 4,919,275 - +0.1 4,919,275 - -2.6 4,919,275 - -0.3 4,919,292 - -1.9 4,919,292 - +0.0 4,919,370 - -1.9 4,919,370 - +0.9 4,919,373 + -1.8 4,919,392 + +2.2 4,919,396 + +0.7 4,919,476 + -0.1 4,919,477 - +1.4 4,919,483 + +0.8 4,919,484 - -0.0 4,919,515 - -0.3 4,919,516 + -1.5 4,919,516 + -1.9 4,919,665 - +0.7 4,919,711 - +1.1 4,919,741 - -0.6 4,919,748 + -2.6 4,919,748 + -0.3 4,919,749 - -0.4 4,919,750 + -1.3 4,919,750 + -2.8 4,919,750 + +1.1 4,919,750 + -0.5 4,919,751 - +1.1 4,919,751 - -0.3 4,919,751 - -2.5 4,919,764 - -0.1 4,919,789 - +0.9 4,919,800 + -0.0 4,919,815 + -0.3 4,919,816 - +0.3 4,919,832 + +0.1 4,919,838 + -1.5 4,919,839 - -1.6 4,919,839 - -2.7 4,919,856 + -2.1 4,919,856 + +0.5 4,919,879 + -3.0 4,919,879 + -1.1 4,919,880 - -0.3 4,919,880 - +0.4 4,919,880 - -2.1 4,920,001 + DDA3937_RS21600 0.21 +0.6 4,920,001 + DDA3937_RS21600 0.21 -0.2 4,920,246 + DDA3937_RS21600 0.61 -0.4 4,920,246 + DDA3937_RS21600 0.61 +0.6 4,920,246 + DDA3937_RS21600 0.61 +0.0 4,920,247 - DDA3937_RS21600 0.61 +0.8 4,920,247 - DDA3937_RS21600 0.61 +0.7 4,920,247 - DDA3937_RS21600 0.61 -0.2 4,920,329 + DDA3937_RS21600 0.74 -2.2 4,920,329 + DDA3937_RS21600 0.74 -0.1 4,920,330 - DDA3937_RS21600 0.74 +1.3 4,920,375 - DDA3937_RS21600 0.82 -2.1 4,920,376 + DDA3937_RS21600 0.82 +1.1 4,920,376 + DDA3937_RS21600 0.82 -0.0 4,920,376 + DDA3937_RS21600 0.82 -0.6 4,920,376 + DDA3937_RS21600 0.82 -0.8 4,920,376 + DDA3937_RS21600 0.82 -0.1 4,920,376 + DDA3937_RS21600 0.82 +0.9 4,920,377 - DDA3937_RS21600 0.82 +0.5 4,920,377 - DDA3937_RS21600 0.82 -0.5 4,920,377 - DDA3937_RS21600 0.82 +2.1 4,920,377 - DDA3937_RS21600 0.82 +3.0 4,920,399 + DDA3937_RS21600 0.86 -2.1 4,920,399 + DDA3937_RS21600 0.86 -0.3 4,920,399 + DDA3937_RS21600 0.86 -2.2 4,920,409 + DDA3937_RS21600 0.87 -4.3 4,920,409 + DDA3937_RS21600 0.87 +0.2 4,920,409 + DDA3937_RS21600 0.87 -0.6 4,920,409 + DDA3937_RS21600 0.87 -0.4 4,920,410 - DDA3937_RS21600 0.87 -3.0 4,920,410 - DDA3937_RS21600 0.87 -0.1 4,920,410 - DDA3937_RS21600 0.87 +0.4 4,920,410 - DDA3937_RS21600 0.87 -2.5 4,920,410 - DDA3937_RS21600 0.87 +1.8 4,920,410 - DDA3937_RS21600 0.87 +0.9 4,920,410 - DDA3937_RS21600 0.87 +1.9 4,920,410 - DDA3937_RS21600 0.87 +1.3 4,920,410 - DDA3937_RS21600 0.87 +1.0 4,920,410 - DDA3937_RS21600 0.87 -0.1 4,920,410 - DDA3937_RS21600 0.87 +1.5 4,920,462 + -1.0 4,920,462 + +0.1 4,920,463 - -0.3 4,920,463 - -0.3 4,920,479 + +0.2 4,920,549 + -1.2 4,920,549 + +0.1 4,920,550 - +1.5 4,920,550 - +0.3 4,920,550 - -2.3 4,920,550 - +0.5 4,920,550 - -0.9 4,920,557 - +0.9 4,920,585 + -0.9 4,920,586 - +0.1 4,920,586 - -0.6 4,920,586 - -0.9 4,920,586 - -1.3 4,920,586 - +0.6 4,920,586 - +0.9 4,920,801 + DDA3937_RS21605 0.12 +1.1 4,920,803 + DDA3937_RS21605 0.13 -0.3 4,920,803 + DDA3937_RS21605 0.13 +1.7 4,920,803 + +0.1 4,920,803 + DDA3937_RS21605 0.13 -0.6 4,920,803 + DDA3937_RS21605 0.13 -1.3 4,920,803 + +0.7 4,920,804 - DDA3937_RS21605 0.13 -0.6 4,920,896 + DDA3937_RS21605 0.18 +0.9 4,920,980 - DDA3937_RS21605 0.22 -0.3 4,921,229 + DDA3937_RS21605 0.35 +2.9 4,921,230 - DDA3937_RS21605 0.35 +0.7 4,921,230 - DDA3937_RS21605 0.35 +0.7 4,921,230 - DDA3937_RS21605 0.35 -1.1 4,921,230 - DDA3937_RS21605 0.35 +0.4 4,921,415 + +0.1 4,921,416 - DDA3937_RS21605 0.45 -0.9 4,921,421 + DDA3937_RS21605 0.45 +0.7 4,921,422 - DDA3937_RS21605 0.45 +1.7 4,921,473 + DDA3937_RS21605 0.48 -0.9
Or see this region's nucleotide sequence