Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21350

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,862,114	+				-1.9
4,862,115	-				+2.5
4,862,158	-				+0.9
4,862,206	+				+0.1
4,862,227	+				+1.7
4,862,227	+				-0.3
4,862,227	+				+1.3
4,862,228	-				-0.1
4,862,228	-				+0.4
4,862,228	-				-1.8
4,862,228	-				-1.0
4,862,228	-				+1.7
4,862,236	+				-0.6
4,862,237	-				-0.4
4,862,271	+				-0.6
4,862,370	+		DDA3937_RS21345	0.25	+0.1
4,862,370	+		DDA3937_RS21345	0.25	-0.3
4,862,370	+		DDA3937_RS21345	0.25	-1.8
4,862,370	+		DDA3937_RS21345	0.25	-0.2
4,862,370	+		DDA3937_RS21345	0.25	-1.7
4,862,370	+		DDA3937_RS21345	0.25	-0.6
4,862,371	-		DDA3937_RS21345	0.25	-1.8
4,862,371	-		DDA3937_RS21345	0.25	+1.9
4,862,371	-		DDA3937_RS21345	0.25	-1.3
4,862,371	-		DDA3937_RS21345	0.25	+0.5
4,862,371	-		DDA3937_RS21345	0.25	+1.5
4,862,371	-		DDA3937_RS21345	0.25	-1.4
4,862,379	+		DDA3937_RS21345	0.26	-0.1
4,862,379	+		DDA3937_RS21345	0.26	+0.0
4,862,379	+		DDA3937_RS21345	0.26	-1.5
4,862,380	-		DDA3937_RS21345	0.26	+2.1
4,862,380	-				+2.7
4,862,576	+		DDA3937_RS21345	0.58	-0.5
4,862,576	+		DDA3937_RS21345	0.58	+0.6
4,862,576	+		DDA3937_RS21345	0.58	+1.1
4,862,577	-		DDA3937_RS21345	0.58	+1.2
4,862,577	-		DDA3937_RS21345	0.58	-1.1
4,862,577	-		DDA3937_RS21345	0.58	-0.6
4,862,936	-				+1.5
4,862,945	+				-1.3
4,862,946	-				-0.1
4,863,029	+		DDA3937_RS21350	0.18	-2.5
4,863,111	+		DDA3937_RS21350	0.35	-0.3
4,863,112	-		DDA3937_RS21350	0.35	-1.3
4,863,113	+		DDA3937_RS21350	0.35	-2.1
4,863,114	-		DDA3937_RS21350	0.35	-1.7
4,863,114	-		DDA3937_RS21350	0.35	-1.2
4,863,114	-		DDA3937_RS21350	0.35	+1.3
4,863,164	+		DDA3937_RS21350	0.46	-2.0
4,863,164	+		DDA3937_RS21350	0.46	-2.2
4,863,165	-		DDA3937_RS21350	0.46	+0.0
4,863,179	+				+2.5
4,863,180	-		DDA3937_RS21350	0.49	-1.3
4,863,180	-		DDA3937_RS21350	0.49	-1.6
4,863,205	-		DDA3937_RS21350	0.54	-0.2
4,863,209	+		DDA3937_RS21350	0.55	-1.7
4,863,209	+		DDA3937_RS21350	0.55	+1.3
4,863,210	-		DDA3937_RS21350	0.55	-0.3
4,863,210	-		DDA3937_RS21350	0.55	-0.9
4,863,279	+		DDA3937_RS21350	0.70	-2.1
4,863,279	+		DDA3937_RS21350	0.70	-1.3
4,863,279	+		DDA3937_RS21350	0.70	-2.2
4,863,279	+		DDA3937_RS21350	0.70	+0.3
4,863,279	+		DDA3937_RS21350	0.70	-2.7
4,863,279	+		DDA3937_RS21350	0.70	-1.9
4,863,280	-		DDA3937_RS21350	0.70	+0.7
4,863,280	-		DDA3937_RS21350	0.70	+0.2
4,863,280	-				+3.7
4,863,280	-		DDA3937_RS21350	0.70	-0.6
4,863,280	-		DDA3937_RS21350	0.70	-2.0
4,863,348	-		DDA3937_RS21350	0.84	-1.8
4,863,366	+		DDA3937_RS21350	0.88	-1.1
4,863,411	+				-2.1
4,863,411	+				-1.1
4,863,411	+				-0.3
4,863,411	+				-1.5
4,863,411	+				-1.3
4,863,411	+				+0.2
4,863,411	+				-0.3
4,863,411	+				+0.2
4,863,412	-				+1.3
4,863,412	-				+1.7
4,863,412	-				+0.0
4,863,415	+				-2.6
4,863,415	+				+1.5
4,863,415	+				-2.2
4,863,415	+				-2.8
4,863,415	+				-1.1
4,863,415	+				-1.5
4,863,415	+				-1.6
4,863,415	+				-0.6
4,863,415	+				-0.6
4,863,415	+				-0.0
4,863,415	+				-0.2
4,863,415	+				-3.1
4,863,415	+				-0.9
4,863,415	+				+0.1
4,863,415	+				+1.6
4,863,415	+				+0.0
4,863,415	+				-1.3
4,863,415	+				-0.1
4,863,415	+				-0.9
4,863,415	+				+0.6
4,863,415	+				-0.1
4,863,415	+				-0.7
4,863,415	+				+0.1
4,863,415	+				+1.9
4,863,415	+				-0.6
4,863,416	-				-2.1
4,863,416	-				+0.3
4,863,416	-				-1.9
4,863,416	-				+0.4
4,863,416	-				+2.5
4,863,416	-				+0.7
4,863,416	-				-1.7
4,863,416	-				-0.9
4,863,416	-				-0.9
4,863,416	-				+1.0
4,863,416	-				-0.6
4,863,416	-				-0.6
4,863,416	-				-3.2
4,863,416	-				+0.3
4,863,416	-				-0.3
4,863,416	-				-1.1
4,863,416	-				-2.9
4,863,416	-				+0.4
4,863,416	-				+0.1
4,863,416	-				+0.2
4,863,416	-				+0.1
4,863,416	-				+1.2
4,863,416	-				-1.8
4,863,416	-				+1.3
4,863,416	-				+0.7
4,863,416	-				-1.2
4,863,416	-				-2.2
4,863,416	-				-2.1
4,863,416	-				+1.0
4,863,416	-				-1.2
4,863,416	-				-2.9
4,863,416	-				-0.6
4,863,462	+				-0.5
4,863,463	-				-1.1
4,863,463	-				-1.1
4,863,463	-				-3.5
4,863,474	+				-0.0
4,863,474	+				+0.5
4,863,475	-				+1.3
4,863,476	+				+2.1
4,863,476	+				+0.2
4,863,476	+				+0.4
4,863,477	-				-1.5
4,863,494	-				+2.6
4,863,494	-				-2.4
4,863,497	-				-2.8
4,863,513	+				-1.1
4,863,514	-				-1.6
4,863,514	-				-1.2
4,863,516	+				-2.5
4,863,516	+				-0.4
4,863,517	-				-0.2
4,863,758	+		DDA3937_RS21355	0.27	-0.1
4,863,838	+		DDA3937_RS21355	0.35	-2.6
4,863,838	+		DDA3937_RS21355	0.35	+3.4
4,863,838	+		DDA3937_RS21355	0.35	+0.4
4,864,020	+		DDA3937_RS21355	0.54	-1.2
4,864,020	+		DDA3937_RS21355	0.54	-2.5
4,864,021	-		DDA3937_RS21355	0.54	-1.0
4,864,021	-				+0.7
4,864,042	+		DDA3937_RS21355	0.56	-1.0
4,864,042	+		DDA3937_RS21355	0.56	+2.8
4,864,042	+		DDA3937_RS21355	0.56	-2.8
4,864,042	+		DDA3937_RS21355	0.56	-2.2
4,864,042	+		DDA3937_RS21355	0.56	+0.4
4,864,042	+		DDA3937_RS21355	0.56	-0.6
4,864,042	+		DDA3937_RS21355	0.56	-1.5
4,864,043	-				+4.0
4,864,043	-		DDA3937_RS21355	0.57	-0.6
4,864,043	-		DDA3937_RS21355	0.57	-0.9
4,864,068	+		DDA3937_RS21355	0.59	+1.2
4,864,128	+		DDA3937_RS21355	0.66	-1.3
4,864,129	-		DDA3937_RS21355	0.66	+0.7
4,864,129	-		DDA3937_RS21355	0.66	+1.3
4,864,162	+		DDA3937_RS21355	0.69	-0.2
4,864,163	-		DDA3937_RS21355	0.69	-0.4
4,864,195	-		DDA3937_RS21355	0.73	-0.3
4,864,308	+		DDA3937_RS21355	0.84	+0.5
4,864,309	-		DDA3937_RS21355	0.85	-0.3
4,864,309	-		DDA3937_RS21355	0.85	-0.1
4,864,357	+		DDA3937_RS21355	0.90	+0.9
4,864,358	-		DDA3937_RS21355	0.90	-0.8
4,864,358	-		DDA3937_RS21355	0.90	+1.7
4,864,358	-		DDA3937_RS21355	0.90	-1.6
4,864,360	+		DDA3937_RS21355	0.90	-1.3
4,864,360	+		DDA3937_RS21355	0.90	+0.2