Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20725

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,710,021	+		DDA3937_RS20720	0.85	-0.2
4,710,044	-		DDA3937_RS20720	0.85	-0.9
4,710,045	+		DDA3937_RS20720	0.85	-2.7
4,710,045	+		DDA3937_RS20720	0.85	-1.1
4,710,045	+		DDA3937_RS20720	0.85	-2.1
4,710,045	+		DDA3937_RS20720	0.85	-1.1
4,710,045	+		DDA3937_RS20720	0.85	-0.3
4,710,045	+		DDA3937_RS20720	0.85	-0.2
4,710,045	+		DDA3937_RS20720	0.85	-0.6
4,710,045	+		DDA3937_RS20720	0.85	-2.3
4,710,045	+		DDA3937_RS20720	0.85	-0.0
4,710,045	+		DDA3937_RS20720	0.85	+0.1
4,710,045	+		DDA3937_RS20720	0.85	+0.1
4,710,046	-		DDA3937_RS20720	0.85	+1.0
4,710,046	-		DDA3937_RS20720	0.85	-0.2
4,710,046	-		DDA3937_RS20720	0.85	-1.5
4,710,046	-		DDA3937_RS20720	0.85	+0.2
4,710,046	-		DDA3937_RS20720	0.85	-1.8
4,710,046	-		DDA3937_RS20720	0.85	-1.5
4,710,046	-		DDA3937_RS20720	0.85	+0.3
4,710,046	-		DDA3937_RS20720	0.85	-1.6
4,710,046	-		DDA3937_RS20720	0.85	-2.1
4,710,046	-		DDA3937_RS20720	0.85	-1.8
4,710,046	-		DDA3937_RS20720	0.85	+0.3
4,710,046	-		DDA3937_RS20720	0.85	+0.7
4,710,051	+		DDA3937_RS20720	0.86	-0.3
4,710,052	-		DDA3937_RS20720	0.86	-1.3
4,710,069	+		DDA3937_RS20720	0.86	-1.9
4,710,069	+		DDA3937_RS20720	0.86	-0.7
4,710,069	+		DDA3937_RS20720	0.86	-2.2
4,710,069	+		DDA3937_RS20720	0.86	+0.5
4,710,069	+		DDA3937_RS20720	0.86	-1.3
4,710,069	+		DDA3937_RS20720	0.86	-1.8
4,710,069	+		DDA3937_RS20720	0.86	-1.8
4,710,069	+		DDA3937_RS20720	0.86	-1.9
4,710,070	-		DDA3937_RS20720	0.86	-1.1
4,710,070	-		DDA3937_RS20720	0.86	-0.2
4,710,070	-		DDA3937_RS20720	0.86	-0.1
4,710,070	-		DDA3937_RS20720	0.86	+0.2
4,710,070	-		DDA3937_RS20720	0.86	+0.4
4,710,073	+		DDA3937_RS20720	0.86	-0.3
4,710,074	-		DDA3937_RS20720	0.86	-0.3
4,710,108	+		DDA3937_RS20720	0.88	+0.7
4,710,108	+		DDA3937_RS20720	0.88	-1.8
4,710,109	-		DDA3937_RS20720	0.88	+1.1
4,710,113	-		DDA3937_RS20720	0.88	-0.9
4,710,159	+		DDA3937_RS20720	0.90	-0.2
4,710,160	-		DDA3937_RS20720	0.90	+0.8
4,710,232	+				-1.6
4,710,247	+				+1.0
4,710,247	+				+1.7
4,710,379	+				-2.0
4,710,380	-				+2.0
4,710,436	+				-0.5
4,710,436	+				-0.2
4,710,437	-				-1.1
4,710,437	-				-0.8
4,710,437	-				-0.8
4,710,437	-				-1.9
4,710,437	-				-0.0
4,710,437	-				+0.7
4,710,437	-				+1.8
4,710,479	+				-1.3
4,710,479	+				+1.0
4,710,480	-				-1.6
4,710,504	+				-1.2
4,710,505	-				-1.0
4,710,513	-				-1.1
4,710,524	-				-1.8
4,710,537	-				-1.5
4,710,542	+				-0.1
4,710,562	+				-2.2
4,710,562	+				+1.8
4,710,570	+				-1.1
4,710,570	+				-0.3
4,710,570	+				+0.6
4,710,573	+				-0.1
4,710,573	+				-1.6
4,710,574	-				+3.0
4,710,595	+				-1.5
4,710,595	+				+0.7
4,710,596	-				-2.6
4,710,596	-				+1.2
4,710,596	-				-1.0
4,710,596	-				+0.7
4,710,599	+				-1.6
4,710,599	+				-0.9
4,710,599	+				-1.6
4,710,599	+				+0.9
4,710,600	-				-0.0
4,710,600	-				+2.2
4,710,600	-				+0.7
4,710,600	-				+0.8
4,710,604	+				-2.0
4,710,605	-				+0.9
4,710,605	-				+0.1
4,710,635	+				+0.7
4,710,635	+				-1.5
4,710,636	-				+0.5
4,710,650	+				-1.6
4,710,650	+				+0.7
4,710,651	-				+2.5
4,710,687	+				-0.6
4,710,688	-				-1.3
4,710,691	+				+2.4
4,710,716	+				-1.3
4,710,717	-				-1.0
4,710,734	-				-1.4
4,710,800	-				+0.9
4,710,800	-				+0.7
4,710,861	+				-1.7
4,710,907	+				+2.6
4,710,945	+				-0.2
4,710,945	+				-2.2
4,710,945	+				+1.0
4,710,946	-				-2.6
4,710,946	-				-1.6
4,711,003	+				-1.8
4,711,009	-				+0.7
4,711,031	-				-1.5
4,711,035	+				-0.4
4,711,046	-				+0.1
4,711,087	+		DDA3937_RS20725	0.13	-0.2
4,711,088	-		DDA3937_RS20725	0.13	-2.4
4,711,117	+		DDA3937_RS20725	0.18	-1.8
4,711,163	+		DDA3937_RS20725	0.25	+0.1
4,711,170	+		DDA3937_RS20725	0.26	-1.3
4,711,212	+		DDA3937_RS20725	0.33	+0.1
4,711,289	+		DDA3937_RS20725	0.45	-2.8
4,711,289	+		DDA3937_RS20725	0.45	-1.3
4,711,409	+		DDA3937_RS20725	0.63	-1.1
4,711,409	+		DDA3937_RS20725	0.63	-3.0
4,711,410	-		DDA3937_RS20725	0.64	-2.3
4,711,419	+		DDA3937_RS20725	0.65	-0.3
4,711,456	-		DDA3937_RS20725	0.71	-0.6
4,711,576	+		DDA3937_RS20725	0.90	-1.3
4,711,577	-		DDA3937_RS20725	0.90	-1.6
4,711,609	+				+1.8
4,711,609	+				+0.8
4,711,609	+				+0.7
4,711,610	-				-1.6
4,711,610	-				+1.4
4,711,610	-				-1.6
4,711,610	-				+0.9
4,711,733	+		DDA3937_RS20730	0.17	-0.5
4,711,733	+		DDA3937_RS20730	0.17	+1.5
4,711,734	-		DDA3937_RS20730	0.17	-0.1
4,711,734	-		DDA3937_RS20730	0.17	-2.5
4,711,771	+		DDA3937_RS20730	0.22	-3.7
4,711,771	+		DDA3937_RS20730	0.22	-0.3
4,711,772	-		DDA3937_RS20730	0.22	-0.6
4,711,931	+		DDA3937_RS20730	0.43	-1.5
4,711,935	-		DDA3937_RS20730	0.43	+0.7
4,711,982	+		DDA3937_RS20730	0.50	-2.8
4,711,982	+		DDA3937_RS20730	0.50	+0.6
4,711,982	+		DDA3937_RS20730	0.50	+3.0
4,712,031	-		DDA3937_RS20730	0.56	-0.3
4,712,154	+		DDA3937_RS20730	0.73	-1.1
4,712,173	+		DDA3937_RS20730	0.75	+0.7
4,712,177	+		DDA3937_RS20730	0.76	+1.0
4,712,189	-		DDA3937_RS20730	0.77	+2.6
4,712,192	+		DDA3937_RS20730	0.78	-0.6
4,712,269	+		DDA3937_RS20730	0.88	-1.6
4,712,270	-		DDA3937_RS20730	0.88	-0.0
4,712,270	-		DDA3937_RS20730	0.88	-2.6
4,712,284	+		DDA3937_RS20730	0.90	-0.9
4,712,316	+				+0.4
4,712,325	-				+1.4
4,712,355	-				-0.2
4,712,355	-				-2.7
4,712,416	+				-0.7
4,712,416	+				+0.7
4,712,417	-				-2.8
4,712,417	-				+0.4
4,712,418	+				-0.3
4,712,418	+				-2.3
4,712,418	+				-0.9
4,712,418	+				+0.5
4,712,419	-				+2.7
4,712,421	+				+1.4
4,712,422	-				-0.5
4,712,422	-				-2.7
4,712,429	+				-2.3
4,712,429	+				-2.5
4,712,429	+				-1.4
4,712,431	+				-1.3
4,712,441	+				+0.6
4,712,485	-				+0.1
4,712,560	-				-3.4
4,712,587	+				+2.6
4,712,588	-				-0.9
4,712,629	+				-0.1