Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20600

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,685,753	-		DDA3937_RS20595	0.59	+0.2
4,685,753	-		DDA3937_RS20595	0.59	-0.9
4,685,859	+		DDA3937_RS20595	0.70	-1.3
4,685,860	-		DDA3937_RS20595	0.70	-0.4
4,685,908	+		DDA3937_RS20595	0.75	+1.3
4,685,908	+		DDA3937_RS20595	0.75	+1.1
4,685,908	+		DDA3937_RS20595	0.75	-1.1
4,685,908	+		DDA3937_RS20595	0.75	-2.8
4,685,908	+		DDA3937_RS20595	0.75	-2.8
4,685,908	+		DDA3937_RS20595	0.75	-0.1
4,685,908	+		DDA3937_RS20595	0.75	-0.6
4,685,909	-		DDA3937_RS20595	0.76	+0.1
4,685,909	-		DDA3937_RS20595	0.76	-1.2
4,685,909	-		DDA3937_RS20595	0.76	+0.7
4,685,909	-		DDA3937_RS20595	0.76	+1.1
4,685,909	-		DDA3937_RS20595	0.76	+0.4
4,685,909	-		DDA3937_RS20595	0.76	-3.2
4,685,912	+		DDA3937_RS20595	0.76	-0.7
4,685,912	+		DDA3937_RS20595	0.76	+1.7
4,685,912	+		DDA3937_RS20595	0.76	+1.1
4,685,913	-		DDA3937_RS20595	0.76	+0.0
4,685,931	+		DDA3937_RS20595	0.78	+1.2
4,685,932	-		DDA3937_RS20595	0.78	+0.4
4,685,932	-		DDA3937_RS20595	0.78	-3.5
4,685,955	+		DDA3937_RS20595	0.80	-0.9
4,685,956	-		DDA3937_RS20595	0.80	-1.2
4,685,956	-		DDA3937_RS20595	0.80	+1.1
4,686,090	+				-0.9
4,686,091	-				-1.4
4,686,091	-				+1.6
4,686,091	-				-0.9
4,686,091	-				+0.6
4,686,091	-				+0.1
4,686,091	-				+0.6
4,686,105	+				-2.5
4,686,105	+				-0.1
4,686,105	+				-0.2
4,686,105	+				-0.9
4,686,106	-				-1.7
4,686,106	-				-0.2
4,686,106	-				-1.9
4,686,106	-				-0.3
4,686,128	-				-1.5
4,686,135	+				-0.0
4,686,136	-				-1.0
4,686,136	-				-1.8
4,686,136	-				-2.0
4,686,159	+				+1.6
4,686,160	-				-1.4
4,686,171	-				+0.8
4,686,179	+				+1.2
4,686,179	+				-1.8
4,686,179	+				-3.6
4,686,180	-				-0.6
4,686,180	-				-2.4
4,686,180	-				-1.3
4,686,181	+				-0.1
4,686,181	+				+1.3
4,686,181	+				+3.0
4,686,181	+				+0.8
4,686,181	+				+0.4
4,686,181	+				+1.9
4,686,181	+				-0.2
4,686,181	+				+0.1
4,686,182	-				+0.5
4,686,182	-				+1.3
4,686,182	-				-1.8
4,686,201	+				+0.0
4,686,201	+				+1.0
4,686,270	-				-0.4
4,686,270	-				+1.2
4,686,309	+				-0.6
4,686,309	+				-1.7
4,686,309	+				-1.3
4,686,310	-				+0.3
4,686,312	+				-0.5
4,686,313	-				+0.2
4,686,340	+				-0.9
4,686,341	-				+0.8
4,686,369	+				-1.6
4,686,384	+				-0.7
4,686,384	+				-1.6
4,686,384	+				-0.6
4,686,384	+				-3.5
4,686,384	+				-0.9
4,686,385	-				-2.3
4,686,385	-				+0.5
4,686,385	-				-0.8
4,686,385	-				+0.0
4,686,398	+				-1.9
4,686,398	+				+0.6
4,686,399	-				+0.0
4,686,399	-				+1.2
4,686,399	-				+0.2
4,686,404	+				+0.1
4,686,404	+				-1.2
4,686,405	-				-0.5
4,686,416	+				+0.7
4,686,417	-				+1.0
4,686,421	+				-3.0
4,686,433	+				-0.1
4,686,438	+				+1.2
4,686,438	+				+0.2
4,686,438	+				+1.0
4,686,438	+				+1.3
4,686,438	+				-2.4
4,686,438	+				-0.2
4,686,439	-				-1.8
4,686,439	-				+2.6
4,686,439	-				+0.5
4,686,439	-				+1.4
4,686,439	-				+1.4
4,686,439	-				-0.6
4,686,443	+				+1.1
4,686,444	-				-2.7
4,686,455	+				-0.5
4,686,455	+				-2.0
4,686,456	-				+0.9
4,686,456	-				+0.8
4,686,475	+				-2.5
4,686,475	+				-0.1
4,686,490	+				+3.8
4,686,490	+				+1.0
4,686,490	+				+1.4
4,686,491	-				+1.0
4,686,493	+				-0.5
4,686,494	-				-0.2
4,686,496	+				+1.5
4,686,496	+				-1.8
4,686,497	-				-1.6
4,686,524	+				-0.6
4,686,524	+				-2.5
4,686,524	+				+1.1
4,686,524	+				-1.6
4,686,528	+				-2.4
4,686,528	+				-0.9
4,686,528	+				-1.1
4,686,529	-				+1.3
4,686,529	-				-2.2
4,686,529	-				-3.1
4,686,556	+				-0.3
4,686,556	+				-1.3
4,686,557	-				-0.9
4,686,560	+				+0.9
4,686,560	+				+1.1
4,686,560	+				-4.0
4,686,560	+				-1.1
4,686,560	+				-1.1
4,686,560	+				-2.2
4,686,561	-				-2.8
4,686,561	-				-1.1
4,686,561	-				-1.5
4,686,564	+				+0.1
4,686,565	-				-1.6
4,686,575	+				-1.3
4,686,576	-				+0.2
4,686,576	-				+0.1
4,686,637	+		DDA3937_RS20600	0.13	-1.1
4,686,637	+		DDA3937_RS20600	0.13	+0.4
4,686,662	+		DDA3937_RS20600	0.15	+0.4
4,686,678	+		DDA3937_RS20600	0.16	+0.4
4,686,679	-		DDA3937_RS20600	0.16	+0.3
4,686,697	-		DDA3937_RS20600	0.17	+0.1
4,686,697	-		DDA3937_RS20600	0.17	+0.7
4,686,697	-		DDA3937_RS20600	0.17	+0.3
4,686,734	-		DDA3937_RS20600	0.20	-0.2
4,686,779	-		DDA3937_RS20600	0.24	-1.9
4,686,779	-		DDA3937_RS20600	0.24	-1.4
4,686,780	+		DDA3937_RS20600	0.24	-3.1
4,686,780	+		DDA3937_RS20600	0.24	-2.2
4,686,780	+		DDA3937_RS20600	0.24	+0.4
4,686,780	+		DDA3937_RS20600	0.24	-0.1
4,686,796	+		DDA3937_RS20600	0.25	+1.7
4,686,796	+		DDA3937_RS20600	0.25	-1.2
4,686,797	-		DDA3937_RS20600	0.25	-2.5
4,686,825	+		DDA3937_RS20600	0.27	-1.8
4,686,825	+		DDA3937_RS20600	0.27	-0.4
4,686,854	+		DDA3937_RS20600	0.29	-2.2
4,686,854	+		DDA3937_RS20600	0.29	-2.5
4,686,854	+		DDA3937_RS20600	0.29	-2.7
4,686,854	+		DDA3937_RS20600	0.29	-1.1
4,686,855	-		DDA3937_RS20600	0.29	+1.3
4,686,855	-		DDA3937_RS20600	0.29	-0.9
4,686,855	-		DDA3937_RS20600	0.29	-1.5
4,686,860	-		DDA3937_RS20600	0.30	-1.4
4,686,860	-		DDA3937_RS20600	0.30	-2.6
4,686,860	-		DDA3937_RS20600	0.30	+0.5
4,686,860	-		DDA3937_RS20600	0.30	-0.8
4,686,874	+		DDA3937_RS20600	0.31	+0.6
4,686,874	+		DDA3937_RS20600	0.31	-0.9
4,686,875	-		DDA3937_RS20600	0.31	-1.8
4,686,875	-		DDA3937_RS20600	0.31	-0.3
4,686,906	-		DDA3937_RS20600	0.33	+1.0
4,686,938	-		DDA3937_RS20600	0.36	-1.3
4,686,941	-		DDA3937_RS20600	0.36	+0.8
4,686,941	-		DDA3937_RS20600	0.36	-0.4
4,687,022	-		DDA3937_RS20600	0.42	-0.7
4,687,047	+		DDA3937_RS20600	0.44	+0.2
4,687,047	+		DDA3937_RS20600	0.44	-2.5
4,687,047	+		DDA3937_RS20600	0.44	+0.5
4,687,047	+		DDA3937_RS20600	0.44	-0.5
4,687,047	+		DDA3937_RS20600	0.44	-2.7
4,687,048	-		DDA3937_RS20600	0.44	-1.1
4,687,048	-		DDA3937_RS20600	0.44	+1.5
4,687,048	-		DDA3937_RS20600	0.44	-1.8
4,687,088	-		DDA3937_RS20600	0.47	-1.6
4,687,119	+		DDA3937_RS20600	0.49	-0.6
4,687,119	+		DDA3937_RS20600	0.49	-0.7
4,687,196	+		DDA3937_RS20600	0.55	+1.0
4,687,229	+		DDA3937_RS20600	0.58	-0.3
4,687,229	+		DDA3937_RS20600	0.58	-0.9
4,687,229	+		DDA3937_RS20600	0.58	-2.3
4,687,229	+		DDA3937_RS20600	0.58	+0.8
4,687,229	+		DDA3937_RS20600	0.58	-0.9
4,687,229	+		DDA3937_RS20600	0.58	-1.9
4,687,229	+		DDA3937_RS20600	0.58	+0.5
4,687,230	-		DDA3937_RS20600	0.58	+1.5
4,687,230	-		DDA3937_RS20600	0.58	-2.7
4,687,230	-		DDA3937_RS20600	0.58	-0.5
4,687,230	-		DDA3937_RS20600	0.58	-1.7
4,687,230	-		DDA3937_RS20600	0.58	+1.1
4,687,230	-		DDA3937_RS20600	0.58	-0.2
4,687,230	-				+1.7
4,687,230	-		DDA3937_RS20600	0.58	-1.8
4,687,230	-		DDA3937_RS20600	0.58	-1.8
4,687,261	+		DDA3937_RS20600	0.60	-1.7
4,687,261	+		DDA3937_RS20600	0.60	+0.6
4,687,261	+		DDA3937_RS20600	0.60	+1.1
4,687,261	+		DDA3937_RS20600	0.60	-0.1
4,687,261	+		DDA3937_RS20600	0.60	+1.1
4,687,262	-		DDA3937_RS20600	0.60	-1.3
4,687,262	-		DDA3937_RS20600	0.60	-0.9
4,687,265	+		DDA3937_RS20600	0.60	+0.5
4,687,265	+		DDA3937_RS20600	0.60	+0.9
4,687,408	+		DDA3937_RS20600	0.71	+0.5
4,687,432	+				+2.4
4,687,447	+		DDA3937_RS20600	0.74	-1.5
4,687,447	+		DDA3937_RS20600	0.74	+1.5
4,687,459	+		DDA3937_RS20600	0.75	-1.7
4,687,460	-		DDA3937_RS20600	0.75	-1.3
4,687,460	-		DDA3937_RS20600	0.75	-1.3
4,687,468	+		DDA3937_RS20600	0.76	-0.6
4,687,468	+		DDA3937_RS20600	0.76	+2.5
4,687,468	+		DDA3937_RS20600	0.76	-1.1
4,687,468	+		DDA3937_RS20600	0.76	-2.1
4,687,468	+		DDA3937_RS20600	0.76	-0.7
4,687,468	+		DDA3937_RS20600	0.76	-0.8
4,687,469	-		DDA3937_RS20600	0.76	+0.8
4,687,491	+		DDA3937_RS20600	0.78	+0.7
4,687,508	+		DDA3937_RS20600	0.79	+1.0
4,687,508	+		DDA3937_RS20600	0.79	+0.1
4,687,584	+		DDA3937_RS20600	0.85	-2.7
4,687,585	-		DDA3937_RS20600	0.85	-0.4
4,687,636	+		DDA3937_RS20600	0.89	-2.0
4,687,716	+				-2.4
4,687,716	+				-2.2
4,687,716	+				+1.1
4,687,716	+				-1.4
4,687,717	-				-1.0
4,687,789	+				-0.3
4,687,789	+				-3.1
4,687,789	+				+2.5
4,687,789	+				-1.3
4,687,790	-				-0.4
4,687,790	-				-1.3
4,687,790	-				-1.9
4,687,790	-				-3.2
4,687,790	-				-1.6
4,687,790	-				-1.1
4,687,792	+				+0.5
4,687,792	+				+0.8
4,687,827	+				+0.9
4,687,827	+				-2.8
4,687,827	+				+0.4
4,687,828	-				-1.1
4,687,828	-				+1.9
4,687,846	+				+0.2
4,687,847	-				+0.2
4,687,847	-				-2.8
4,687,847	-				+1.7
4,687,850	+				+0.7
4,687,850	+				+0.8
4,687,850	+				-1.8
4,687,850	+				-1.9
4,687,850	+				+1.3
4,687,850	+				-1.8
4,687,850	+				+1.4
4,687,850	+				-0.9
4,687,850	+				-0.3
4,687,850	+				-2.1
4,687,850	+				-0.9
4,687,850	+				+1.0
4,687,850	+				+0.1
4,687,850	+				-0.6
4,687,850	+				-1.3
4,687,850	+				-1.1
4,687,850	+				+0.1
4,687,850	+				-1.3
4,687,850	+				-0.1
4,687,850	+				-3.0
4,687,850	+				+0.2
4,687,850	+				+0.2
4,687,850	+				-2.6
4,687,850	+				-0.9
4,687,851	-				-2.5
4,687,851	-				-0.2
4,687,851	-				-1.8
4,687,851	-				-1.3
4,687,851	-				-0.5
4,687,851	-				+1.2
4,687,851	-				-1.3
4,687,851	-				-1.8
4,687,851	-				-2.1
4,687,851	-				+1.9
4,687,851	-				-1.1
4,687,851	-				-0.5
4,687,851	-				+0.1
4,687,851	-				+0.4
4,687,851	-				+2.4
4,687,851	-				+1.9
4,687,851	-				-0.6
4,687,851	-				-3.0
4,687,851	-				-1.5
4,687,854	+				+1.4
4,687,854	+				+0.1
4,687,854	+				-1.3
4,687,854	+				-1.9
4,687,854	+				+0.3
4,687,854	+				-0.6
4,687,854	+				+1.2
4,687,854	+				-1.3
4,687,854	+				-2.1
4,687,855	-				+0.2
4,687,855	-				+1.3
4,687,855	-				+0.1
4,687,855	-				+0.2
4,687,857	+				-2.5
4,687,857	+				-3.1
4,687,857	+				-2.5
4,687,857	+				-1.0
4,687,858	-				+0.3
4,687,858	-				+0.5
4,687,858	-				+0.8
4,687,858	-				-0.6
4,687,858	-				-0.4
4,687,858	-				-2.3
4,687,862	+				+0.0
4,687,862	+				+1.7
4,687,863	-				-1.9
4,687,869	-				-1.5
4,687,883	+				+0.0
4,687,884	-				-0.0
4,687,918	+				+0.1
4,687,919	-				-2.5
4,687,919	-				+0.7
4,687,919	-				-2.3
4,687,922	+				-0.6
4,687,922	+				+1.5
4,687,923	-				-1.1
4,687,923	-				-1.8
4,687,923	-				-1.9
4,687,923	-				-0.1
4,687,923	-				+1.2
4,687,923	-				-2.4
4,687,962	-				-0.0
4,688,267	-		DDA3937_RS20605	0.22	+1.4
4,688,267	-		DDA3937_RS20605	0.22	+1.5
4,688,326	-		DDA3937_RS20605	0.26	-1.1
4,688,484	+		DDA3937_RS20605	0.36	+0.2
4,688,484	+				+1.7
4,688,484	+		DDA3937_RS20605	0.36	+1.7
4,688,485	-		DDA3937_RS20605	0.36	+0.2
4,688,485	-		DDA3937_RS20605	0.36	-2.0
4,688,546	+		DDA3937_RS20605	0.40	+0.1
4,688,546	+		DDA3937_RS20605	0.40	+0.3
4,688,547	-		DDA3937_RS20605	0.40	+1.4
4,688,553	+		DDA3937_RS20605	0.41	+0.5
4,688,553	+		DDA3937_RS20605	0.41	+1.7
4,688,553	+		DDA3937_RS20605	0.41	+0.7
4,688,553	+		DDA3937_RS20605	0.41	-0.3
4,688,553	+		DDA3937_RS20605	0.41	-2.1
4,688,554	-		DDA3937_RS20605	0.41	+1.0
4,688,554	-		DDA3937_RS20605	0.41	-2.0
4,688,554	-		DDA3937_RS20605	0.41	-0.7
4,688,560	+		DDA3937_RS20605	0.41	-0.6
4,688,560	+		DDA3937_RS20605	0.41	+0.5
4,688,561	-		DDA3937_RS20605	0.41	+0.7
4,688,561	-		DDA3937_RS20605	0.41	-0.6
4,688,561	-		DDA3937_RS20605	0.41	-0.2
4,688,561	-		DDA3937_RS20605	0.41	+1.2
4,688,561	-		DDA3937_RS20605	0.41	-0.2
4,688,561	-		DDA3937_RS20605	0.41	-1.9
4,688,561	-		DDA3937_RS20605	0.41	+0.3
4,688,561	-				+1.3
4,688,562	+		DDA3937_RS20605	0.41	-2.7
4,688,563	-		DDA3937_RS20605	0.41	+1.3
4,688,662	-		DDA3937_RS20605	0.48	+2.4
4,688,662	-		DDA3937_RS20605	0.48	-2.4