Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20380

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,640,867	+				-1.7
4,640,867	+				-1.7
4,640,867	+				-2.4
4,640,868	-				+0.7
4,640,868	-				-1.3
4,640,886	+				-2.8
4,640,886	+				-3.4
4,640,886	+				+0.2
4,640,887	-				+0.5
4,640,887	-				-2.5
4,640,887	-				-2.2
4,640,938	-		DDA3937_RS20375	0.11	-0.3
4,641,004	+		DDA3937_RS20375	0.18	+0.2
4,641,004	+		DDA3937_RS20375	0.18	+0.1
4,641,004	+		DDA3937_RS20375	0.18	+0.3
4,641,004	+		DDA3937_RS20375	0.18	-1.3
4,641,004	+		DDA3937_RS20375	0.18	-0.6
4,641,004	+		DDA3937_RS20375	0.18	-3.4
4,641,005	-				+0.1
4,641,005	-		DDA3937_RS20375	0.19	+0.7
4,641,005	-		DDA3937_RS20375	0.19	-1.5
4,641,074	+		DDA3937_RS20375	0.27	-1.1
4,641,074	+		DDA3937_RS20375	0.27	+1.6
4,641,075	-		DDA3937_RS20375	0.27	+0.3
4,641,075	-		DDA3937_RS20375	0.27	+0.7
4,641,075	-		DDA3937_RS20375	0.27	-0.5
4,641,112	-		DDA3937_RS20375	0.32	-0.9
4,641,121	+		DDA3937_RS20375	0.33	-0.1
4,641,121	+		DDA3937_RS20375	0.33	-1.5
4,641,121	+		DDA3937_RS20375	0.33	+0.5
4,641,122	-		DDA3937_RS20375	0.33	-1.8
4,641,145	+		DDA3937_RS20375	0.36	-0.9
4,641,145	+		DDA3937_RS20375	0.36	+1.3
4,641,145	+		DDA3937_RS20375	0.36	+0.4
4,641,146	-		DDA3937_RS20375	0.36	+0.2
4,641,146	-		DDA3937_RS20375	0.36	-2.2
4,641,172	+		DDA3937_RS20375	0.39	-3.9
4,641,172	+		DDA3937_RS20375	0.39	+0.6
4,641,172	+		DDA3937_RS20375	0.39	-0.8
4,641,172	+		DDA3937_RS20375	0.39	-1.3
4,641,173	-		DDA3937_RS20375	0.39	-0.0
4,641,233	+		DDA3937_RS20375	0.46	+1.0
4,641,327	+		DDA3937_RS20375	0.57	-1.1
4,641,327	+		DDA3937_RS20375	0.57	+0.0
4,641,327	+		DDA3937_RS20375	0.57	-1.3
4,641,337	+		DDA3937_RS20375	0.59	+1.7
4,641,469	+		DDA3937_RS20375	0.75	-1.1
4,641,483	+		DDA3937_RS20375	0.76	-1.8
4,641,483	+				-0.9
4,641,484	-		DDA3937_RS20375	0.76	-2.8
4,641,484	-		DDA3937_RS20375	0.76	+0.3
4,641,484	-		DDA3937_RS20375	0.76	-0.3
4,641,596	-				-3.0
4,641,608	-				+1.3
4,641,676	+				-0.6
4,641,677	-				-0.0
4,641,839	-				-0.3
4,641,839	-				+2.0
4,641,839	-				+2.8
4,641,843	+				-1.0
4,641,843	+				-0.6
4,641,844	-				-0.1
4,641,883	+				+0.7
4,641,967	+				-1.2
4,641,967	+				-0.9
4,641,968	-				-1.8
4,642,007	+				+0.2
4,642,007	+				-0.5
4,642,039	-				+0.8
4,642,039	-				+0.7
4,642,494	+		DDA3937_RS20380	0.29	+0.0
4,642,494	+		DDA3937_RS20380	0.29	-0.6
4,642,494	+		DDA3937_RS20380	0.29	+0.6
4,642,494	+		DDA3937_RS20380	0.29	-1.3
4,642,495	-		DDA3937_RS20380	0.29	-0.5
4,642,495	-		DDA3937_RS20380	0.29	-0.8
4,642,495	-		DDA3937_RS20380	0.29	+0.8
4,642,495	-		DDA3937_RS20380	0.29	-1.3
4,642,495	-		DDA3937_RS20380	0.29	+0.5
4,642,575	+		DDA3937_RS20380	0.32	+1.7
4,642,575	+		DDA3937_RS20380	0.32	-0.2
4,642,576	-		DDA3937_RS20380	0.32	-1.1
4,642,576	-		DDA3937_RS20380	0.32	-1.9
4,642,576	-		DDA3937_RS20380	0.32	+1.4
4,642,576	-		DDA3937_RS20380	0.32	+0.7
4,642,633	-		DDA3937_RS20380	0.35	+0.5
4,642,633	-		DDA3937_RS20380	0.35	+0.5
4,642,648	+		DDA3937_RS20380	0.36	-1.3
4,642,649	-		DDA3937_RS20380	0.36	-1.6
4,642,673	+		DDA3937_RS20380	0.37	-1.0
4,642,673	+		DDA3937_RS20380	0.37	+3.8
4,642,674	-		DDA3937_RS20380	0.37	+1.3
4,642,674	-		DDA3937_RS20380	0.37	-1.5
4,642,674	-		DDA3937_RS20380	0.37	-0.1
4,642,674	-		DDA3937_RS20380	0.37	+2.7
4,642,674	-		DDA3937_RS20380	0.37	-0.9
4,642,740	+		DDA3937_RS20380	0.40	-0.0
4,642,823	-		DDA3937_RS20380	0.43	-2.9
4,642,823	-		DDA3937_RS20380	0.43	-0.1
4,642,990	-		DDA3937_RS20380	0.51	-0.5
4,642,990	-		DDA3937_RS20380	0.51	+0.1
4,643,333	+		DDA3937_RS20380	0.66	+0.4
4,643,382	+		DDA3937_RS20380	0.68	-1.5
4,643,383	-		DDA3937_RS20380	0.68	-1.4
4,643,513	-		DDA3937_RS20380	0.74	-0.3
4,643,539	-				+2.7
4,643,610	+		DDA3937_RS20380	0.78	+1.6
4,643,610	+		DDA3937_RS20380	0.78	+1.2
4,643,610	+		DDA3937_RS20380	0.78	-2.2
4,643,611	-		DDA3937_RS20380	0.78	-1.6
4,643,611	-		DDA3937_RS20380	0.78	-0.3
4,643,736	+		DDA3937_RS20380	0.84	-0.1
4,643,736	+		DDA3937_RS20380	0.84	-0.5
4,643,736	+		DDA3937_RS20380	0.84	+0.1
4,643,736	+		DDA3937_RS20380	0.84	-2.6
4,643,736	+				-0.3
4,643,736	+		DDA3937_RS20380	0.84	-1.5
4,643,736	+		DDA3937_RS20380	0.84	-0.9
4,643,736	+		DDA3937_RS20380	0.84	-1.3
4,643,736	+		DDA3937_RS20380	0.84	-0.0
4,643,736	+		DDA3937_RS20380	0.84	-2.8
4,643,736	+		DDA3937_RS20380	0.84	+0.5
4,643,736	+		DDA3937_RS20380	0.84	-0.8
4,643,737	-		DDA3937_RS20380	0.84	-2.0
4,643,737	-		DDA3937_RS20380	0.84	-1.8
4,643,737	-		DDA3937_RS20380	0.84	+1.2
4,643,737	-		DDA3937_RS20380	0.84	-1.1
4,643,737	-		DDA3937_RS20380	0.84	+0.1
4,643,737	-		DDA3937_RS20380	0.84	-2.4
4,643,742	+		DDA3937_RS20380	0.84	-1.1
4,643,742	+		DDA3937_RS20380	0.84	-2.2
4,643,742	+		DDA3937_RS20380	0.84	+0.5
4,643,742	+		DDA3937_RS20380	0.84	+0.6
4,643,742	+		DDA3937_RS20380	0.84	+2.2
4,643,742	+		DDA3937_RS20380	0.84	-1.1
4,643,743	-		DDA3937_RS20380	0.84	-1.9
4,643,743	-		DDA3937_RS20380	0.84	+2.9
4,643,743	-		DDA3937_RS20380	0.84	+0.7
4,643,743	-		DDA3937_RS20380	0.84	+1.5
4,643,743	-		DDA3937_RS20380	0.84	-0.4
4,643,743	-		DDA3937_RS20380	0.84	-1.4
4,643,870	+		DDA3937_RS20380	0.89	-0.4
4,643,870	+		DDA3937_RS20380	0.89	-0.7
4,643,871	-		DDA3937_RS20380	0.89	+1.2
4,643,871	-		DDA3937_RS20380	0.89	-1.1
4,643,910	+				+2.9
4,643,911	-				-1.9
4,644,033	+				-0.4
4,644,033	+				+0.6
4,644,033	+				+0.5
4,644,034	-				-1.5
4,644,034	-				+1.3
4,644,034	-				-1.1
4,644,034	-				-0.1
4,644,099	-				+0.7
4,644,162	+				+1.7
4,644,162	+				+0.3
4,644,162	+				-1.4
4,644,167	+				+0.6
4,644,167	+				+1.5
4,644,167	+				-1.3
4,644,167	+				-0.6
4,644,167	+				+0.3
4,644,167	+				+1.9
4,644,167	+				+2.8
4,644,167	+				-0.2
4,644,167	+				+0.1
4,644,167	+				-1.0
4,644,168	-				-1.9
4,644,168	-				-0.9
4,644,168	-				-0.6
4,644,168	-				-2.8
4,644,168	-				+1.1
4,644,168	-				-0.9
4,644,168	-				-1.8
4,644,168	-				+0.3
4,644,168	-				+1.0
4,644,168	-				-0.1
4,644,168	-				+0.4
4,644,168	-				-0.8
4,644,170	+				+0.3
4,644,170	+				+2.4
4,644,170	+				+0.2
4,644,170	+				-1.9
4,644,171	-				+0.4
4,644,171	-				+0.5
4,644,171	-				+1.8
4,644,171	-				-2.1
4,644,171	-				+0.5
4,644,174	+				-0.2
4,644,174	+				+1.2
4,644,174	+				+0.3
4,644,174	+				+0.5
4,644,174	+				-2.4
4,644,175	-				-1.6
4,644,175	-				-0.7
4,644,175	-				+1.1
4,644,175	-				-2.5
4,644,187	+				-3.4
4,644,188	-				-2.9
4,644,225	+				+0.2
4,644,225	+				+0.3
4,644,226	-				+0.2
4,644,233	+				+0.9
4,644,233	+				-1.3
4,644,234	-				+0.2
4,644,234	-				+1.7
4,644,366	+		DDA3937_RS20385	0.16	+1.2
4,644,366	+		DDA3937_RS20385	0.16	+0.9
4,644,366	+		DDA3937_RS20385	0.16	+1.3
4,644,381	-		DDA3937_RS20385	0.18	-1.1
4,644,387	+		DDA3937_RS20385	0.18	+0.0
4,644,513	+		DDA3937_RS20385	0.32	-0.6
4,644,513	+		DDA3937_RS20385	0.32	-1.3
4,644,513	+				+0.1
4,644,514	-		DDA3937_RS20385	0.32	-1.6
4,644,701	+		DDA3937_RS20385	0.52	+2.2
4,644,701	+		DDA3937_RS20385	0.52	+2.0
4,644,701	+		DDA3937_RS20385	0.52	-0.3
4,644,702	-		DDA3937_RS20385	0.52	-0.4
4,644,702	-		DDA3937_RS20385	0.52	+0.8
4,644,746	+		DDA3937_RS20385	0.57	-3.8
4,644,747	-		DDA3937_RS20385	0.57	+0.7
4,644,750	+		DDA3937_RS20385	0.57	+2.4
4,644,750	+		DDA3937_RS20385	0.57	+1.3
4,644,750	+		DDA3937_RS20385	0.57	-3.2
4,644,750	+		DDA3937_RS20385	0.57	-1.8
4,644,751	-		DDA3937_RS20385	0.57	+0.6
4,644,751	-		DDA3937_RS20385	0.57	-0.8
4,644,751	-		DDA3937_RS20385	0.57	-0.4
4,644,751	-		DDA3937_RS20385	0.57	+0.1
4,644,867	-		DDA3937_RS20385	0.70	-2.5
4,644,874	-		DDA3937_RS20385	0.70	-0.3
4,644,874	-		DDA3937_RS20385	0.70	-0.3
4,644,878	+		DDA3937_RS20385	0.71	-2.5
4,644,879	-		DDA3937_RS20385	0.71	-1.5
4,644,879	-		DDA3937_RS20385	0.71	+0.5
4,645,006	+		DDA3937_RS20385	0.84	+1.2
4,645,007	-		DDA3937_RS20385	0.84	+1.6