Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20245

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,610,735	-				-1.3
4,610,809	-				-0.3
4,610,840	+				+1.7
4,610,840	+				+0.8
4,610,840	+				+1.7
4,610,841	-				-1.0
4,610,841	-				-1.8
4,610,868	+				-2.2
4,610,908	+				-1.1
4,610,982	+		DDA3937_RS20240	0.19	-1.5
4,610,983	-		DDA3937_RS20240	0.19	-0.5
4,611,048	+		DDA3937_RS20240	0.29	-0.4
4,611,048	+		DDA3937_RS20240	0.29	+0.5
4,611,048	+		DDA3937_RS20240	0.29	-2.1
4,611,048	+		DDA3937_RS20240	0.29	-2.5
4,611,049	-		DDA3937_RS20240	0.30	+0.5
4,611,049	-		DDA3937_RS20240	0.30	+0.6
4,611,049	-		DDA3937_RS20240	0.30	-0.0
4,611,049	-		DDA3937_RS20240	0.30	-0.3
4,611,049	-		DDA3937_RS20240	0.30	-1.7
4,611,066	+		DDA3937_RS20240	0.32	-0.1
4,611,132	+		DDA3937_RS20240	0.43	-0.5
4,611,132	+		DDA3937_RS20240	0.43	-0.7
4,611,132	+		DDA3937_RS20240	0.43	-2.5
4,611,174	+		DDA3937_RS20240	0.50	+0.3
4,611,177	+		DDA3937_RS20240	0.50	-3.3
4,611,177	+		DDA3937_RS20240	0.50	-0.6
4,611,177	+		DDA3937_RS20240	0.50	-2.8
4,611,178	-		DDA3937_RS20240	0.51	+0.4
4,611,315	+		DDA3937_RS20240	0.73	-1.9
4,611,315	+		DDA3937_RS20240	0.73	-1.3
4,611,315	+		DDA3937_RS20240	0.73	+1.8
4,611,315	+		DDA3937_RS20240	0.73	-0.3
4,611,315	+		DDA3937_RS20240	0.73	-1.0
4,611,315	+		DDA3937_RS20240	0.73	-2.0
4,611,316	-		DDA3937_RS20240	0.73	+1.8
4,611,316	-		DDA3937_RS20240	0.73	-0.7
4,611,416	-		DDA3937_RS20240	0.89	-0.8
4,611,538	-				-1.5
4,611,550	-				+0.7
4,611,551	-				-0.1
4,611,650	+		DDA3937_RS20245	0.13	+1.1
4,611,650	+		DDA3937_RS20245	0.13	+1.0
4,611,650	+		DDA3937_RS20245	0.13	+2.0
4,611,650	+		DDA3937_RS20245	0.13	+1.7
4,611,650	+		DDA3937_RS20245	0.13	+0.7
4,611,650	+		DDA3937_RS20245	0.13	+0.9
4,611,650	+		DDA3937_RS20245	0.13	+1.4
4,611,651	-		DDA3937_RS20245	0.13	+1.3
4,611,651	-		DDA3937_RS20245	0.13	+1.5
4,611,651	-		DDA3937_RS20245	0.13	+1.5
4,611,651	-		DDA3937_RS20245	0.13	+0.6
4,611,651	-		DDA3937_RS20245	0.13	+0.3
4,611,651	-		DDA3937_RS20245	0.13	+1.7
4,611,651	-		DDA3937_RS20245	0.13	-0.1
4,611,651	-		DDA3937_RS20245	0.13	+1.5
4,611,651	-		DDA3937_RS20245	0.13	+0.3
4,611,651	-		DDA3937_RS20245	0.13	-2.0
4,611,651	-		DDA3937_RS20245	0.13	-1.6
4,611,651	-		DDA3937_RS20245	0.13	+1.5
4,611,651	-		DDA3937_RS20245	0.13	+1.8
4,611,651	-		DDA3937_RS20245	0.13	+2.8
4,611,706	+		DDA3937_RS20245	0.17	+1.5
4,611,706	+		DDA3937_RS20245	0.17	+0.0
4,611,706	+		DDA3937_RS20245	0.17	+2.0
4,611,706	+		DDA3937_RS20245	0.17	+0.3
4,611,706	+		DDA3937_RS20245	0.17	+1.1
4,611,706	+		DDA3937_RS20245	0.17	-0.2
4,611,706	+		DDA3937_RS20245	0.17	-1.3
4,611,706	+				-0.9
4,611,707	-		DDA3937_RS20245	0.17	-2.1
4,611,707	-		DDA3937_RS20245	0.17	+1.7
4,611,707	-		DDA3937_RS20245	0.17	+3.0
4,611,707	-		DDA3937_RS20245	0.17	+1.2
4,611,707	-		DDA3937_RS20245	0.17	+2.6
4,611,707	-		DDA3937_RS20245	0.17	-0.5
4,611,707	-		DDA3937_RS20245	0.17	+1.1
4,611,707	-		DDA3937_RS20245	0.17	+0.0
4,611,710	+		DDA3937_RS20245	0.17	-0.6
4,611,710	+		DDA3937_RS20245	0.17	-1.9
4,611,710	+		DDA3937_RS20245	0.17	-0.4
4,611,710	+		DDA3937_RS20245	0.17	+1.5
4,611,710	+		DDA3937_RS20245	0.17	+1.7
4,611,828	+		DDA3937_RS20245	0.26	+2.0
4,611,923	+		DDA3937_RS20245	0.33	+1.7
4,611,933	-		DDA3937_RS20245	0.34	+0.3
4,612,004	+		DDA3937_RS20245	0.39	+0.1
4,612,004	+		DDA3937_RS20245	0.39	+0.9
4,612,004	+		DDA3937_RS20245	0.39	+2.2
4,612,005	-		DDA3937_RS20245	0.39	+2.4
4,612,005	-		DDA3937_RS20245	0.39	+0.3
4,612,005	-		DDA3937_RS20245	0.39	-0.7
4,612,005	-		DDA3937_RS20245	0.39	+1.6
4,612,005	-		DDA3937_RS20245	0.39	-1.3
4,612,005	-		DDA3937_RS20245	0.39	-2.5
4,612,005	-		DDA3937_RS20245	0.39	+3.0
4,612,029	-		DDA3937_RS20245	0.41	+0.6
4,612,029	-		DDA3937_RS20245	0.41	+1.8
4,612,029	-		DDA3937_RS20245	0.41	+1.7
4,612,039	-		DDA3937_RS20245	0.42	-0.3
4,612,052	+		DDA3937_RS20245	0.43	-0.6
4,612,053	-		DDA3937_RS20245	0.43	-0.5
4,612,059	+		DDA3937_RS20245	0.43	+1.0
4,612,059	+		DDA3937_RS20245	0.43	+2.1
4,612,059	+		DDA3937_RS20245	0.43	+0.4
4,612,059	+		DDA3937_RS20245	0.43	-1.1
4,612,061	+		DDA3937_RS20245	0.44	+0.7
4,612,061	+		DDA3937_RS20245	0.44	+0.2
4,612,061	+		DDA3937_RS20245	0.44	+0.7
4,612,061	+		DDA3937_RS20245	0.44	+0.1
4,612,061	+		DDA3937_RS20245	0.44	+0.7
4,612,061	+		DDA3937_RS20245	0.44	-3.7
4,612,061	+		DDA3937_RS20245	0.44	-0.5
4,612,062	-		DDA3937_RS20245	0.44	+1.7
4,612,062	-		DDA3937_RS20245	0.44	+1.1
4,612,062	-		DDA3937_RS20245	0.44	+2.0
4,612,127	+		DDA3937_RS20245	0.48	+1.5
4,612,127	+		DDA3937_RS20245	0.48	-0.0
4,612,127	+		DDA3937_RS20245	0.48	-0.3
4,612,127	+				+1.3
4,612,127	+		DDA3937_RS20245	0.48	-0.1
4,612,128	-		DDA3937_RS20245	0.49	+0.1
4,612,128	-		DDA3937_RS20245	0.49	+1.8
4,612,128	-		DDA3937_RS20245	0.49	-1.1
4,612,128	-		DDA3937_RS20245	0.49	+1.7
4,612,128	-		DDA3937_RS20245	0.49	+1.0
4,612,128	-		DDA3937_RS20245	0.49	+2.9
4,612,165	-		DDA3937_RS20245	0.51	+0.4
4,612,177	+		DDA3937_RS20245	0.52	-0.3
4,612,177	+		DDA3937_RS20245	0.52	+0.9
4,612,178	-		DDA3937_RS20245	0.52	-0.0
4,612,178	-		DDA3937_RS20245	0.52	+1.5
4,612,178	-		DDA3937_RS20245	0.52	+0.1
4,612,178	-		DDA3937_RS20245	0.52	+2.1
4,612,211	+		DDA3937_RS20245	0.55	+0.2
4,612,212	-		DDA3937_RS20245	0.55	+1.5
4,612,212	-		DDA3937_RS20245	0.55	+0.8
4,612,260	-		DDA3937_RS20245	0.58	+2.5
4,612,344	-		DDA3937_RS20245	0.65	+0.2
4,612,352	+		DDA3937_RS20245	0.65	-0.0
4,612,352	+		DDA3937_RS20245	0.65	-0.9
4,612,353	-		DDA3937_RS20245	0.65	+2.5
4,612,353	-		DDA3937_RS20245	0.65	+0.7
4,612,428	+		DDA3937_RS20245	0.71	+2.9
4,612,430	+		DDA3937_RS20245	0.71	+1.8
4,612,430	+		DDA3937_RS20245	0.71	+0.7
4,612,430	+		DDA3937_RS20245	0.71	+0.6
4,612,430	+		DDA3937_RS20245	0.71	+1.3
4,612,430	+		DDA3937_RS20245	0.71	-0.6
4,612,430	+		DDA3937_RS20245	0.71	+1.8
4,612,431	-		DDA3937_RS20245	0.71	+2.3
4,612,431	-		DDA3937_RS20245	0.71	+1.8
4,612,431	-		DDA3937_RS20245	0.71	+0.7
4,612,431	-		DDA3937_RS20245	0.71	+0.9
4,612,431	-		DDA3937_RS20245	0.71	-1.5
4,612,431	-				-0.3
4,612,542	+		DDA3937_RS20245	0.80	-0.3
4,612,551	-				+0.7
4,612,551	-		DDA3937_RS20245	0.80	+1.1
4,612,565	+		DDA3937_RS20245	0.81	-1.1
4,612,565	+		DDA3937_RS20245	0.81	-1.3
4,612,566	-		DDA3937_RS20245	0.81	-0.1
4,612,566	-		DDA3937_RS20245	0.81	+1.6
4,612,566	-		DDA3937_RS20245	0.81	+1.9
4,612,566	-		DDA3937_RS20245	0.81	+0.8
4,612,566	-		DDA3937_RS20245	0.81	+2.7
4,612,585	-		DDA3937_RS20245	0.83	-0.6
4,612,720	+				-0.1
4,612,721	-				-1.9
4,612,735	-				+1.1
4,612,791	-				-3.2
4,612,791	-				+0.0
4,612,791	-				+1.5
4,612,791	-				-0.5
4,612,848	+				+1.5
4,612,849	-				+2.7
4,612,849	-				-1.1
4,612,929	+				-0.5
4,612,952	-				+0.7
4,613,000	+				-2.6
4,613,000	+				-0.9
4,613,001	-				-0.6
4,613,001	-				+1.4
4,613,018	+				+1.6
4,613,081	-				+0.7
4,613,100	+				-0.6
4,613,201	-				-2.1
4,613,590	+				-0.3
4,613,590	+		DDA3937_RS20250	0.27	+3.0
4,613,590	+		DDA3937_RS20250	0.27	-0.2
4,613,590	+		DDA3937_RS20250	0.27	-1.2
4,613,590	+		DDA3937_RS20250	0.27	+0.8
4,613,590	+				-0.3
4,613,590	+		DDA3937_RS20250	0.27	-0.6
4,613,590	+		DDA3937_RS20250	0.27	+1.7
4,613,590	+		DDA3937_RS20250	0.27	-0.2
4,613,590	+		DDA3937_RS20250	0.27	+0.8
4,613,590	+		DDA3937_RS20250	0.27	-2.0
4,613,590	+		DDA3937_RS20250	0.27	-0.3
4,613,591	-		DDA3937_RS20250	0.27	-1.1
4,613,591	-		DDA3937_RS20250	0.27	-2.0
4,613,591	-		DDA3937_RS20250	0.27	-0.3
4,613,591	-		DDA3937_RS20250	0.27	+2.3
4,613,591	-		DDA3937_RS20250	0.27	+0.7
4,613,665	+		DDA3937_RS20250	0.31	+1.2