Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20090

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,571,266	-		DDA3937_RS20085	0.51	-0.9
4,571,295	+		DDA3937_RS20085	0.53	+2.2
4,571,565	+		DDA3937_RS20085	0.71	-2.3
4,571,566	-		DDA3937_RS20085	0.71	-1.8
4,571,640	-		DDA3937_RS20085	0.76	-1.6
4,571,960	+				+1.6
4,571,961	-				-1.3
4,571,961	-				-0.1
4,571,961	-				-0.6
4,572,021	+				-1.6
4,572,021	+				+1.1
4,572,021	+				+0.5
4,572,022	-				+1.3
4,572,022	-				-1.8
4,572,022	-				-0.3
4,572,022	-				+1.0
4,572,180	+				+1.9
4,572,232	-				+0.2
4,572,232	-				+0.3
4,572,232	-				-0.3
4,572,232	-				-2.2
4,572,272	+				-1.1
4,572,272	+				-3.7
4,572,272	+				-0.3
4,572,272	+				-1.2
4,572,272	+				-1.2
4,572,272	+				+0.7
4,572,273	-				+0.3
4,572,273	-				-0.5
4,572,273	-				-2.5
4,572,273	-				+2.4
4,572,273	-				+0.5
4,572,273	-				-1.1
4,572,273	-				-1.6
4,572,273	-				-2.2
4,572,332	+				-1.1
4,572,332	+				+0.7
4,572,333	-				+1.5
4,572,490	+		DDA3937_RS20090	0.15	-2.0
4,572,491	-		DDA3937_RS20090	0.15	+0.4
4,572,491	-		DDA3937_RS20090	0.15	-0.7
4,572,545	+		DDA3937_RS20090	0.18	-0.3
4,572,545	+		DDA3937_RS20090	0.18	+0.9
4,572,545	+		DDA3937_RS20090	0.18	-0.6
4,572,545	+		DDA3937_RS20090	0.18	-2.5
4,572,546	-		DDA3937_RS20090	0.18	+1.0
4,572,610	+		DDA3937_RS20090	0.21	+0.5
4,572,610	+		DDA3937_RS20090	0.21	+0.1
4,572,610	+		DDA3937_RS20090	0.21	+0.5
4,572,610	+		DDA3937_RS20090	0.21	+1.3
4,572,610	+		DDA3937_RS20090	0.21	-0.3
4,572,610	+		DDA3937_RS20090	0.21	+1.1
4,572,610	+		DDA3937_RS20090	0.21	-0.6
4,572,610	+		DDA3937_RS20090	0.21	+1.2
4,572,610	+		DDA3937_RS20090	0.21	+1.3
4,572,611	-		DDA3937_RS20090	0.21	-1.2
4,572,611	-		DDA3937_RS20090	0.21	+0.6
4,572,611	-		DDA3937_RS20090	0.21	+1.4
4,572,611	-		DDA3937_RS20090	0.21	-2.6
4,572,611	-		DDA3937_RS20090	0.21	+0.9
4,572,613	-				+0.1
4,572,715	-		DDA3937_RS20090	0.27	+1.2
4,572,727	-		DDA3937_RS20090	0.28	+0.7
4,572,727	-		DDA3937_RS20090	0.28	-2.4
4,572,899	-		DDA3937_RS20090	0.37	-0.6
4,572,924	+		DDA3937_RS20090	0.39	-0.3
4,572,924	+		DDA3937_RS20090	0.39	+0.5
4,572,924	+		DDA3937_RS20090	0.39	-0.5
4,572,924	+		DDA3937_RS20090	0.39	-1.6
4,572,924	+		DDA3937_RS20090	0.39	+0.3
4,572,924	+		DDA3937_RS20090	0.39	+0.9
4,572,924	+		DDA3937_RS20090	0.39	-0.3
4,573,014	+		DDA3937_RS20090	0.44	-2.8
4,573,015	-		DDA3937_RS20090	0.44	+1.8
4,573,016	+		DDA3937_RS20090	0.44	-0.7
4,573,017	-		DDA3937_RS20090	0.44	-2.1
4,573,017	-		DDA3937_RS20090	0.44	+1.1
4,573,017	-		DDA3937_RS20090	0.44	+1.7
4,573,017	-		DDA3937_RS20090	0.44	-1.1
4,573,017	-		DDA3937_RS20090	0.44	-0.3
4,573,081	+		DDA3937_RS20090	0.47	-2.0
4,573,082	-		DDA3937_RS20090	0.47	-0.8
4,573,086	-		DDA3937_RS20090	0.48	-0.8
4,573,086	-		DDA3937_RS20090	0.48	-0.4
4,573,086	-		DDA3937_RS20090	0.48	-2.5
4,573,111	-		DDA3937_RS20090	0.49	-0.5
4,573,111	-		DDA3937_RS20090	0.49	+0.5
4,573,140	-		DDA3937_RS20090	0.51	-0.6
4,573,180	+		DDA3937_RS20090	0.53	+0.3
4,573,181	-		DDA3937_RS20090	0.53	-0.0
4,573,189	+		DDA3937_RS20090	0.53	-0.6
4,573,189	+		DDA3937_RS20090	0.53	-2.2
4,573,231	+		DDA3937_RS20090	0.56	+1.1
4,573,232	-		DDA3937_RS20090	0.56	-0.8
4,573,245	+		DDA3937_RS20090	0.56	-2.5
4,573,245	+		DDA3937_RS20090	0.56	+0.2
4,573,245	+		DDA3937_RS20090	0.56	+1.7
4,573,245	+		DDA3937_RS20090	0.56	-0.6
4,573,245	+		DDA3937_RS20090	0.56	+1.0
4,573,245	+		DDA3937_RS20090	0.56	-2.5
4,573,246	-		DDA3937_RS20090	0.56	-0.3
4,573,246	-		DDA3937_RS20090	0.56	-0.5
4,573,246	-		DDA3937_RS20090	0.56	+2.3
4,573,246	-		DDA3937_RS20090	0.56	-0.6
4,573,246	-		DDA3937_RS20090	0.56	-0.2
4,573,246	-		DDA3937_RS20090	0.56	-1.4
4,573,246	-		DDA3937_RS20090	0.56	-2.6
4,573,246	-		DDA3937_RS20090	0.56	-1.6
4,573,246	-		DDA3937_RS20090	0.56	+0.1
4,573,246	-		DDA3937_RS20090	0.56	+2.0
4,573,249	-		DDA3937_RS20090	0.57	-1.9
4,573,255	-		DDA3937_RS20090	0.57	+0.1
4,573,255	-		DDA3937_RS20090	0.57	+0.1
4,573,255	-		DDA3937_RS20090	0.57	-1.6
4,573,352	+		DDA3937_RS20090	0.62	-3.1
4,573,374	+		DDA3937_RS20090	0.63	+1.4
4,573,374	+		DDA3937_RS20090	0.63	-2.1
4,573,374	+		DDA3937_RS20090	0.63	-3.1
4,573,389	+		DDA3937_RS20090	0.64	-1.1
4,573,389	+		DDA3937_RS20090	0.64	-0.3
4,573,488	+		DDA3937_RS20090	0.70	-0.6
4,573,488	+		DDA3937_RS20090	0.70	+1.0
4,573,488	+		DDA3937_RS20090	0.70	-1.2
4,573,488	+		DDA3937_RS20090	0.70	-1.1
4,573,488	+		DDA3937_RS20090	0.70	-2.1
4,573,492	+		DDA3937_RS20090	0.70	-0.2
4,573,493	-		DDA3937_RS20090	0.70	-2.7
4,573,493	-		DDA3937_RS20090	0.70	+1.2
4,573,493	-		DDA3937_RS20090	0.70	-0.8
4,573,554	+		DDA3937_RS20090	0.73	-0.1
4,573,554	+		DDA3937_RS20090	0.73	+1.6
4,573,555	-		DDA3937_RS20090	0.73	-0.6
4,573,555	-		DDA3937_RS20090	0.73	+1.1
4,573,556	+		DDA3937_RS20090	0.73	-1.5
4,573,556	+		DDA3937_RS20090	0.73	-2.8
4,573,556	+		DDA3937_RS20090	0.73	-2.8
4,573,557	-		DDA3937_RS20090	0.73	+0.3
4,573,557	-		DDA3937_RS20090	0.73	-0.4
4,573,557	-		DDA3937_RS20090	0.73	+0.4
4,573,557	-		DDA3937_RS20090	0.73	-0.6
4,573,581	+		DDA3937_RS20090	0.75	-2.1
4,573,582	-		DDA3937_RS20090	0.75	+0.2
4,573,646	+		DDA3937_RS20090	0.78	-0.2
4,573,646	+		DDA3937_RS20090	0.78	+1.7
4,573,646	+		DDA3937_RS20090	0.78	+0.8
4,573,647	-		DDA3937_RS20090	0.78	+0.0
4,573,647	-		DDA3937_RS20090	0.78	-1.2
4,573,706	-		DDA3937_RS20090	0.82	-1.6
4,573,706	-		DDA3937_RS20090	0.82	+0.5
4,573,730	+		DDA3937_RS20090	0.83	-2.1
4,573,730	+		DDA3937_RS20090	0.83	+0.4
4,573,730	+		DDA3937_RS20090	0.83	+0.4
4,573,730	+		DDA3937_RS20090	0.83	+0.8
4,573,730	+		DDA3937_RS20090	0.83	-0.2
4,573,730	+		DDA3937_RS20090	0.83	-1.9
4,573,730	+		DDA3937_RS20090	0.83	-1.6
4,573,730	+		DDA3937_RS20090	0.83	-2.6
4,573,730	+				+0.7
4,573,730	+		DDA3937_RS20090	0.83	-0.3
4,573,730	+		DDA3937_RS20090	0.83	-0.1
4,573,730	+		DDA3937_RS20090	0.83	-0.2
4,573,730	+		DDA3937_RS20090	0.83	-2.1
4,573,730	+		DDA3937_RS20090	0.83	-0.1
4,573,730	+		DDA3937_RS20090	0.83	-0.0
4,573,730	+		DDA3937_RS20090	0.83	+0.8
4,573,731	-		DDA3937_RS20090	0.83	-1.5
4,573,731	-		DDA3937_RS20090	0.83	-2.6
4,573,731	-		DDA3937_RS20090	0.83	+1.2
4,573,731	-		DDA3937_RS20090	0.83	-0.4
4,573,731	-		DDA3937_RS20090	0.83	+0.5
4,573,731	-		DDA3937_RS20090	0.83	+1.0
4,573,731	-		DDA3937_RS20090	0.83	-1.9
4,573,731	-		DDA3937_RS20090	0.83	+0.4
4,573,731	-		DDA3937_RS20090	0.83	-0.3
4,573,731	-		DDA3937_RS20090	0.83	-1.3
4,573,731	-		DDA3937_RS20090	0.83	-3.2
4,573,731	-		DDA3937_RS20090	0.83	+0.2
4,573,731	-		DDA3937_RS20090	0.83	+2.1
4,573,731	-		DDA3937_RS20090	0.83	-0.4
4,573,732	+		DDA3937_RS20090	0.83	-1.5
4,573,732	+		DDA3937_RS20090	0.83	-0.1
4,573,732	+		DDA3937_RS20090	0.83	+0.7
4,573,732	+		DDA3937_RS20090	0.83	+0.5
4,573,732	+		DDA3937_RS20090	0.83	-0.6
4,573,732	+		DDA3937_RS20090	0.83	-1.3
4,573,732	+		DDA3937_RS20090	0.83	-1.9
4,573,732	+		DDA3937_RS20090	0.83	-2.8
4,573,732	+		DDA3937_RS20090	0.83	-2.4
4,573,733	-		DDA3937_RS20090	0.83	-1.8
4,573,733	-		DDA3937_RS20090	0.83	-0.7
4,573,733	-		DDA3937_RS20090	0.83	-0.8
4,573,733	-		DDA3937_RS20090	0.83	-0.9
4,573,733	-		DDA3937_RS20090	0.83	+0.2
4,573,734	+		DDA3937_RS20090	0.83	-0.3
4,573,734	+		DDA3937_RS20090	0.83	-2.4
4,573,735	-		DDA3937_RS20090	0.83	-0.8
4,573,735	-		DDA3937_RS20090	0.83	-2.2
4,573,735	-		DDA3937_RS20090	0.83	-0.5
4,573,748	+		DDA3937_RS20090	0.84	-0.6
4,573,748	+		DDA3937_RS20090	0.84	+0.3
4,573,749	-		DDA3937_RS20090	0.84	+0.7
4,573,808	+		DDA3937_RS20090	0.87	+0.5
4,573,808	+		DDA3937_RS20090	0.87	-3.0
4,573,808	+		DDA3937_RS20090	0.87	+0.6
4,573,808	+		DDA3937_RS20090	0.87	-2.9
4,573,809	-		DDA3937_RS20090	0.87	-2.6
4,573,809	-		DDA3937_RS20090	0.87	+0.7
4,573,826	+		DDA3937_RS20090	0.88	-2.5
4,573,836	+				+0.1
4,573,837	-		DDA3937_RS20090	0.89	+0.2
4,573,837	-		DDA3937_RS20090	0.89	-0.4
4,573,939	-				-3.1
4,573,942	-				+0.2
4,574,045	+				-1.5
4,574,051	+				+0.3
4,574,051	+				-0.7
4,574,051	+				+0.4
4,574,051	+				-0.3
4,574,051	+				-3.0
4,574,051	+				-2.3
4,574,052	-				-2.6
4,574,052	-				-2.5
4,574,052	-				-1.8
4,574,052	-				-2.3
4,574,081	-				+3.6
4,574,097	-				-1.2
4,574,097	-				+0.7
4,574,182	-				+0.1
4,574,182	-				+0.3
4,574,198	-				+0.0
4,574,198	-				+0.7
4,574,198	-				-0.9
4,574,198	-				-1.3
4,574,203	-				-0.1
4,574,203	-				-0.2
4,574,203	-				-0.8
4,574,203	-				-2.3
4,574,203	-				+1.1
4,574,204	+				-2.7
4,574,219	-				-1.4
4,574,219	-				-1.1
4,574,219	-				-2.9
4,574,219	-				+1.1
4,574,294	+				+0.8
4,574,294	+				+0.4
4,574,294	+				+1.1
4,574,294	+				-0.2
4,574,295	-				+1.1
4,574,295	-				-1.1
4,574,295	-				-0.3
4,574,362	+				-2.2
4,574,390	+				-0.6
4,574,394	+				-3.1
4,574,394	+				+0.3
4,574,463	+				-2.1
4,574,475	-				-2.0
4,574,475	-				+0.7
4,574,475	-				+1.3
4,574,500	+				-0.1
4,574,500	+				+1.4
4,574,501	-				-1.9
4,574,533	-				+0.7
4,574,572	-				-0.3
4,574,572	-				+1.3
4,574,572	-				-2.0
4,574,572	-				-0.8
4,574,574	+				-0.8
4,574,574	+				+0.3
4,574,575	-				+1.4
4,574,575	-				-1.3
4,574,596	+				-0.9
4,574,596	+				-2.0
4,574,596	+				-3.0
4,574,596	+				-1.1
4,574,597	-				+1.4
4,574,597	-				-0.6
4,574,597	-				-1.6
4,574,690	+		DDA3937_RS20095	0.15	+0.1
4,574,690	+		DDA3937_RS20095	0.15	-1.3
4,574,691	-		DDA3937_RS20095	0.15	+1.5
4,574,691	-		DDA3937_RS20095	0.15	+1.2
4,574,691	-		DDA3937_RS20095	0.15	-1.5
4,574,691	-		DDA3937_RS20095	0.15	+1.3
4,574,691	-		DDA3937_RS20095	0.15	+0.1
4,574,691	-		DDA3937_RS20095	0.15	+1.4
4,574,691	-		DDA3937_RS20095	0.15	-0.6
4,574,691	-		DDA3937_RS20095	0.15	-3.4
4,574,691	-		DDA3937_RS20095	0.15	-1.3
4,574,691	-		DDA3937_RS20095	0.15	+1.4
4,574,692	+		DDA3937_RS20095	0.15	+1.8
4,574,693	-		DDA3937_RS20095	0.15	-2.8
4,574,706	-		DDA3937_RS20095	0.16	+0.2
4,574,776	+		DDA3937_RS20095	0.20	-2.4
4,574,777	-		DDA3937_RS20095	0.20	-0.1
4,574,777	-		DDA3937_RS20095	0.20	+0.2
4,574,787	-		DDA3937_RS20095	0.20	+0.4
4,574,810	+		DDA3937_RS20095	0.21	-1.1
4,574,810	+		DDA3937_RS20095	0.21	+0.1
4,574,810	+		DDA3937_RS20095	0.21	-2.2
4,574,811	-		DDA3937_RS20095	0.21	+2.4
4,574,811	-		DDA3937_RS20095	0.21	+0.5
4,574,903	-		DDA3937_RS20095	0.27	-2.7
4,574,923	+		DDA3937_RS20095	0.28	-0.3
4,574,924	-		DDA3937_RS20095	0.28	-1.5
4,574,924	-		DDA3937_RS20095	0.28	-1.8