Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19890 and DDA3937_RS19895 overlap by 4 nucleotides DDA3937_RS19895 and DDA3937_RS19900 overlap by 4 nucleotides DDA3937_RS19900 and DDA3937_RS19905 are separated by 88 nucleotides DDA3937_RS19905 and DDA3937_RS19910 are separated by 59 nucleotides DDA3937_RS19910 and DDA3937_RS19915 are separated by 57 nucleotides
DDA3937_RS19890: DDA3937_RS19890 - tyrosine recombinase XerC, at 4,531,604 to 4,532,512
_RS19890
DDA3937_RS19895: DDA3937_RS19895 - DUF484 domain-containing protein, at 4,532,509 to 4,533,210
_RS19895
DDA3937_RS19900: DDA3937_RS19900 - diaminopimelate epimerase, at 4,533,207 to 4,534,031
_RS19900
DDA3937_RS19905: DDA3937_RS19905 - lipoprotein, at 4,534,120 to 4,534,302
_RS19905
DDA3937_RS19910: DDA3937_RS19910 - iron donor protein CyaY, at 4,534,362 to 4,534,682
_RS19910
DDA3937_RS19915: DDA3937_RS19915 - class I adenylate cyclase, at 4,534,740 to 4,537,298
_RS19915
Position (kb) 4533
4534
4535 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4532.512 kb on + strand at 4532.512 kb on + strand at 4532.512 kb on + strand at 4532.513 kb on - strand at 4532.594 kb on + strand, within DDA3937_RS19895 at 4532.595 kb on - strand, within DDA3937_RS19895 at 4532.732 kb on + strand, within DDA3937_RS19895 at 4532.733 kb on - strand, within DDA3937_RS19895 at 4532.733 kb on - strand, within DDA3937_RS19895 at 4532.733 kb on - strand, within DDA3937_RS19895 at 4532.733 kb on - strand, within DDA3937_RS19895 at 4532.782 kb on - strand, within DDA3937_RS19895 at 4532.803 kb on - strand, within DDA3937_RS19895 at 4532.925 kb on + strand, within DDA3937_RS19895 at 4533.090 kb on + strand, within DDA3937_RS19895 at 4533.091 kb on - strand, within DDA3937_RS19895 at 4533.150 kb on - strand at 4533.150 kb on - strand at 4533.210 kb on + strand at 4533.210 kb on + strand at 4533.210 kb on + strand at 4533.210 kb on + strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.219 kb on - strand at 4534.205 kb on + strand, within DDA3937_RS19905 at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.322 kb on - strand at 4534.324 kb on - strand at 4534.361 kb on + strand at 4534.405 kb on + strand, within DDA3937_RS19910 at 4534.405 kb on + strand at 4534.406 kb on - strand, within DDA3937_RS19910 at 4534.464 kb on - strand, within DDA3937_RS19910 at 4534.579 kb on - strand, within DDA3937_RS19910 at 4534.681 kb on - strand at 4534.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,532,512 + +0.5 4,532,512 + +1.3 4,532,512 + +0.3 4,532,513 - +0.5 4,532,594 + DDA3937_RS19895 0.12 -0.9 4,532,595 - DDA3937_RS19895 0.12 -0.6 4,532,732 + DDA3937_RS19895 0.32 +0.6 4,532,733 - DDA3937_RS19895 0.32 +1.8 4,532,733 - DDA3937_RS19895 0.32 +1.2 4,532,733 - DDA3937_RS19895 0.32 +0.8 4,532,733 - DDA3937_RS19895 0.32 +0.3 4,532,782 - DDA3937_RS19895 0.39 +1.5 4,532,803 - DDA3937_RS19895 0.42 +1.3 4,532,925 + DDA3937_RS19895 0.59 -0.3 4,533,090 + DDA3937_RS19895 0.83 +2.8 4,533,091 - DDA3937_RS19895 0.83 +1.0 4,533,150 - -1.9 4,533,150 - +1.7 4,533,210 + +0.1 4,533,210 + +1.3 4,533,210 + +1.6 4,533,210 + +1.5 4,533,211 - -0.6 4,533,211 - -0.3 4,533,211 - +0.2 4,533,211 - +1.5 4,533,211 - +0.1 4,533,211 - +1.4 4,533,219 - +1.1 4,534,205 + DDA3937_RS19905 0.46 +1.1 4,534,313 - +3.7 4,534,313 - +2.2 4,534,313 - +0.4 4,534,313 - +1.9 4,534,313 - -2.1 4,534,313 - +0.7 4,534,313 - +0.5 4,534,313 - +3.5 4,534,313 - +1.3 4,534,313 - -0.7 4,534,313 - +2.4 4,534,313 - -1.1 4,534,313 - +0.9 4,534,313 - +3.2 4,534,313 - +1.2 4,534,313 - +2.3 4,534,313 - +0.6 4,534,313 - +0.7 4,534,313 - -1.5 4,534,313 - +2.0 4,534,322 - +2.5 4,534,324 - -0.1 4,534,361 + +1.5 4,534,405 + DDA3937_RS19910 0.13 +1.9 4,534,405 + -0.3 4,534,406 - DDA3937_RS19910 0.14 +1.2 4,534,464 - DDA3937_RS19910 0.32 +2.3 4,534,579 - DDA3937_RS19910 0.68 -0.6 4,534,681 - -0.9 4,534,681 - -2.5
Or see this region's nucleotide sequence