Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18780 and DDA3937_RS18785 are separated by 183 nucleotides DDA3937_RS18785 and DDA3937_RS18790 are separated by 367 nucleotides
DDA3937_RS18780: DDA3937_RS18780 - LysR family transcriptional regulator, at 4,289,884 to 4,290,780
_RS18780
DDA3937_RS18785: DDA3937_RS18785 - Tar ligand binding domain-containing protein, at 4,290,964 to 4,292,634
_RS18785
DDA3937_RS18790: DDA3937_RS18790 - IS110-like element ISEch3 family transposase, at 4,293,002 to 4,294,021
_RS18790
Position (kb) 4290
4291
4292
4293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4289.994 kb on + strand, within DDA3937_RS18780 at 4289.995 kb on - strand, within DDA3937_RS18780 at 4290.245 kb on - strand, within DDA3937_RS18780 at 4290.333 kb on + strand, within DDA3937_RS18780 at 4290.333 kb on + strand, within DDA3937_RS18780 at 4290.333 kb on + strand, within DDA3937_RS18780 at 4290.333 kb on + strand, within DDA3937_RS18780 at 4290.334 kb on - strand, within DDA3937_RS18780 at 4290.334 kb on - strand, within DDA3937_RS18780 at 4290.334 kb on - strand, within DDA3937_RS18780 at 4290.337 kb on + strand, within DDA3937_RS18780 at 4290.353 kb on - strand, within DDA3937_RS18780 at 4290.353 kb on - strand, within DDA3937_RS18780 at 4290.357 kb on + strand, within DDA3937_RS18780 at 4290.371 kb on - strand, within DDA3937_RS18780 at 4290.371 kb on - strand, within DDA3937_RS18780 at 4290.394 kb on + strand, within DDA3937_RS18780 at 4290.394 kb on + strand, within DDA3937_RS18780 at 4290.395 kb on - strand, within DDA3937_RS18780 at 4290.395 kb on - strand, within DDA3937_RS18780 at 4290.460 kb on + strand at 4290.461 kb on - strand, within DDA3937_RS18780 at 4290.461 kb on - strand, within DDA3937_RS18780 at 4290.493 kb on + strand, within DDA3937_RS18780 at 4290.493 kb on + strand, within DDA3937_RS18780 at 4290.493 kb on + strand, within DDA3937_RS18780 at 4290.493 kb on + strand, within DDA3937_RS18780 at 4290.496 kb on + strand, within DDA3937_RS18780 at 4290.496 kb on + strand, within DDA3937_RS18780 at 4290.496 kb on + strand, within DDA3937_RS18780 at 4290.497 kb on - strand, within DDA3937_RS18780 at 4290.497 kb on - strand, within DDA3937_RS18780 at 4290.497 kb on - strand, within DDA3937_RS18780 at 4290.701 kb on - strand at 4290.750 kb on - strand at 4290.808 kb on - strand at 4290.808 kb on - strand at 4290.824 kb on - strand at 4290.839 kb on + strand at 4290.855 kb on + strand at 4290.855 kb on + strand at 4290.923 kb on + strand at 4290.940 kb on + strand at 4290.965 kb on + strand at 4291.278 kb on + strand, within DDA3937_RS18785 at 4291.337 kb on - strand, within DDA3937_RS18785 at 4291.347 kb on - strand, within DDA3937_RS18785 at 4291.366 kb on + strand, within DDA3937_RS18785 at 4291.512 kb on + strand, within DDA3937_RS18785 at 4291.513 kb on - strand, within DDA3937_RS18785 at 4291.513 kb on - strand, within DDA3937_RS18785 at 4291.530 kb on + strand, within DDA3937_RS18785 at 4291.530 kb on + strand, within DDA3937_RS18785 at 4291.530 kb on + strand, within DDA3937_RS18785 at 4291.530 kb on + strand, within DDA3937_RS18785 at 4291.808 kb on + strand, within DDA3937_RS18785 at 4291.808 kb on + strand, within DDA3937_RS18785 at 4291.886 kb on - strand, within DDA3937_RS18785 at 4291.903 kb on - strand, within DDA3937_RS18785 at 4291.903 kb on - strand, within DDA3937_RS18785 at 4292.004 kb on - strand, within DDA3937_RS18785 at 4292.004 kb on - strand, within DDA3937_RS18785 at 4292.017 kb on + strand, within DDA3937_RS18785 at 4292.017 kb on + strand, within DDA3937_RS18785 at 4292.018 kb on - strand, within DDA3937_RS18785 at 4292.064 kb on + strand, within DDA3937_RS18785 at 4292.064 kb on + strand, within DDA3937_RS18785 at 4292.064 kb on + strand, within DDA3937_RS18785 at 4292.064 kb on + strand, within DDA3937_RS18785 at 4292.065 kb on - strand, within DDA3937_RS18785 at 4292.072 kb on + strand at 4292.072 kb on + strand, within DDA3937_RS18785 at 4292.073 kb on - strand, within DDA3937_RS18785 at 4292.073 kb on - strand, within DDA3937_RS18785 at 4292.073 kb on - strand, within DDA3937_RS18785 at 4292.073 kb on - strand, within DDA3937_RS18785 at 4292.074 kb on + strand, within DDA3937_RS18785 at 4292.075 kb on - strand, within DDA3937_RS18785 at 4292.122 kb on - strand, within DDA3937_RS18785 at 4292.130 kb on + strand, within DDA3937_RS18785 at 4292.132 kb on + strand, within DDA3937_RS18785 at 4292.132 kb on + strand, within DDA3937_RS18785 at 4292.133 kb on - strand, within DDA3937_RS18785 at 4292.174 kb on + strand, within DDA3937_RS18785 at 4292.198 kb on + strand, within DDA3937_RS18785 at 4292.199 kb on - strand, within DDA3937_RS18785 at 4292.199 kb on - strand, within DDA3937_RS18785 at 4292.211 kb on + strand, within DDA3937_RS18785 at 4292.212 kb on - strand, within DDA3937_RS18785 at 4292.212 kb on - strand, within DDA3937_RS18785 at 4292.265 kb on - strand, within DDA3937_RS18785 at 4292.272 kb on - strand, within DDA3937_RS18785 at 4292.272 kb on - strand, within DDA3937_RS18785 at 4292.272 kb on - strand, within DDA3937_RS18785 at 4292.276 kb on + strand, within DDA3937_RS18785 at 4292.277 kb on - strand, within DDA3937_RS18785 at 4292.277 kb on - strand, within DDA3937_RS18785 at 4292.280 kb on + strand, within DDA3937_RS18785 at 4292.305 kb on - strand, within DDA3937_RS18785 at 4292.305 kb on - strand, within DDA3937_RS18785 at 4292.376 kb on + strand, within DDA3937_RS18785 at 4292.439 kb on + strand, within DDA3937_RS18785 at 4292.440 kb on - strand, within DDA3937_RS18785 at 4292.447 kb on + strand, within DDA3937_RS18785 at 4292.447 kb on + strand, within DDA3937_RS18785 at 4292.448 kb on - strand, within DDA3937_RS18785 at 4292.472 kb on + strand at 4292.473 kb on - strand at 4292.485 kb on - strand at 4292.538 kb on - strand at 4292.570 kb on - strand at 4292.574 kb on + strand at 4292.574 kb on + strand at 4292.575 kb on - strand at 4292.578 kb on + strand at 4292.578 kb on + strand at 4292.578 kb on + strand at 4292.578 kb on + strand at 4292.579 kb on - strand at 4292.625 kb on + strand at 4292.626 kb on - strand at 4292.637 kb on - strand at 4292.698 kb on - strand at 4292.701 kb on + strand at 4292.702 kb on - strand at 4292.702 kb on - strand at 4292.702 kb on - strand at 4292.702 kb on - strand at 4292.743 kb on + strand at 4292.743 kb on + strand at 4292.743 kb on + strand at 4292.743 kb on + strand at 4292.743 kb on + strand at 4292.744 kb on - strand at 4292.744 kb on - strand at 4292.744 kb on - strand at 4292.765 kb on + strand at 4292.790 kb on + strand at 4292.794 kb on + strand at 4292.794 kb on + strand at 4292.795 kb on - strand at 4292.795 kb on - strand at 4292.801 kb on + strand at 4292.801 kb on + strand at 4292.801 kb on + strand at 4292.841 kb on - strand at 4292.842 kb on + strand at 4292.842 kb on + strand at 4292.843 kb on - strand at 4292.843 kb on - strand at 4292.843 kb on - strand at 4292.843 kb on - strand at 4292.893 kb on + strand at 4292.894 kb on - strand at 4293.233 kb on + strand, within DDA3937_RS18790 at 4293.355 kb on - strand, within DDA3937_RS18790 at 4293.473 kb on + strand, within DDA3937_RS18790
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,289,994 + DDA3937_RS18780 0.12 +0.6 4,289,995 - DDA3937_RS18780 0.12 -1.1 4,290,245 - DDA3937_RS18780 0.40 -0.3 4,290,333 + DDA3937_RS18780 0.50 -0.9 4,290,333 + DDA3937_RS18780 0.50 -1.0 4,290,333 + DDA3937_RS18780 0.50 -0.4 4,290,333 + DDA3937_RS18780 0.50 +1.2 4,290,334 - DDA3937_RS18780 0.50 -0.9 4,290,334 - DDA3937_RS18780 0.50 -1.0 4,290,334 - DDA3937_RS18780 0.50 +0.9 4,290,337 + DDA3937_RS18780 0.51 +0.1 4,290,353 - DDA3937_RS18780 0.52 -1.1 4,290,353 - DDA3937_RS18780 0.52 -0.2 4,290,357 + DDA3937_RS18780 0.53 -1.0 4,290,371 - DDA3937_RS18780 0.54 +1.0 4,290,371 - DDA3937_RS18780 0.54 -1.7 4,290,394 + DDA3937_RS18780 0.57 -0.2 4,290,394 + DDA3937_RS18780 0.57 +0.8 4,290,395 - DDA3937_RS18780 0.57 -0.3 4,290,395 - DDA3937_RS18780 0.57 -1.5 4,290,460 + -0.9 4,290,461 - DDA3937_RS18780 0.64 +1.6 4,290,461 - DDA3937_RS18780 0.64 -1.3 4,290,493 + DDA3937_RS18780 0.68 -1.0 4,290,493 + DDA3937_RS18780 0.68 -1.2 4,290,493 + DDA3937_RS18780 0.68 +2.1 4,290,493 + DDA3937_RS18780 0.68 +1.1 4,290,496 + DDA3937_RS18780 0.68 -0.3 4,290,496 + DDA3937_RS18780 0.68 +2.7 4,290,496 + DDA3937_RS18780 0.68 +1.0 4,290,497 - DDA3937_RS18780 0.68 +0.5 4,290,497 - DDA3937_RS18780 0.68 -2.8 4,290,497 - DDA3937_RS18780 0.68 -0.5 4,290,701 - -0.7 4,290,750 - -0.7 4,290,808 - -1.3 4,290,808 - -2.9 4,290,824 - -1.4 4,290,839 + +0.1 4,290,855 + +1.2 4,290,855 + +2.4 4,290,923 + +0.3 4,290,940 + -1.7 4,290,965 + -2.6 4,291,278 + DDA3937_RS18785 0.19 -0.4 4,291,337 - DDA3937_RS18785 0.22 -0.8 4,291,347 - DDA3937_RS18785 0.23 -0.1 4,291,366 + DDA3937_RS18785 0.24 -1.3 4,291,512 + DDA3937_RS18785 0.33 -0.7 4,291,513 - DDA3937_RS18785 0.33 -2.0 4,291,513 - DDA3937_RS18785 0.33 -2.2 4,291,530 + DDA3937_RS18785 0.34 -0.6 4,291,530 + DDA3937_RS18785 0.34 +0.3 4,291,530 + DDA3937_RS18785 0.34 -2.7 4,291,530 + DDA3937_RS18785 0.34 -2.1 4,291,808 + DDA3937_RS18785 0.51 -3.0 4,291,808 + DDA3937_RS18785 0.51 +0.9 4,291,886 - DDA3937_RS18785 0.55 +1.1 4,291,903 - DDA3937_RS18785 0.56 -1.1 4,291,903 - DDA3937_RS18785 0.56 -0.3 4,292,004 - DDA3937_RS18785 0.62 -1.6 4,292,004 - DDA3937_RS18785 0.62 +1.7 4,292,017 + DDA3937_RS18785 0.63 -1.1 4,292,017 + DDA3937_RS18785 0.63 +0.1 4,292,018 - DDA3937_RS18785 0.63 -2.3 4,292,064 + DDA3937_RS18785 0.66 -2.1 4,292,064 + DDA3937_RS18785 0.66 -3.2 4,292,064 + DDA3937_RS18785 0.66 -2.4 4,292,064 + DDA3937_RS18785 0.66 -0.3 4,292,065 - DDA3937_RS18785 0.66 -1.1 4,292,072 + -0.9 4,292,072 + DDA3937_RS18785 0.66 -0.5 4,292,073 - DDA3937_RS18785 0.66 -1.1 4,292,073 - DDA3937_RS18785 0.66 +0.4 4,292,073 - DDA3937_RS18785 0.66 +1.5 4,292,073 - DDA3937_RS18785 0.66 -0.6 4,292,074 + DDA3937_RS18785 0.66 +0.7 4,292,075 - DDA3937_RS18785 0.66 +0.5 4,292,122 - DDA3937_RS18785 0.69 -1.5 4,292,130 + DDA3937_RS18785 0.70 -2.2 4,292,132 + DDA3937_RS18785 0.70 -1.1 4,292,132 + DDA3937_RS18785 0.70 -1.3 4,292,133 - DDA3937_RS18785 0.70 -0.2 4,292,174 + DDA3937_RS18785 0.72 +0.7 4,292,198 + DDA3937_RS18785 0.74 +0.2 4,292,199 - DDA3937_RS18785 0.74 -1.1 4,292,199 - DDA3937_RS18785 0.74 +1.7 4,292,211 + DDA3937_RS18785 0.75 -0.9 4,292,212 - DDA3937_RS18785 0.75 -1.5 4,292,212 - DDA3937_RS18785 0.75 -1.1 4,292,265 - DDA3937_RS18785 0.78 +0.7 4,292,272 - DDA3937_RS18785 0.78 -1.1 4,292,272 - DDA3937_RS18785 0.78 -1.1 4,292,272 - DDA3937_RS18785 0.78 -0.9 4,292,276 + DDA3937_RS18785 0.79 -0.1 4,292,277 - DDA3937_RS18785 0.79 -1.6 4,292,277 - DDA3937_RS18785 0.79 +0.1 4,292,280 + DDA3937_RS18785 0.79 +0.8 4,292,305 - DDA3937_RS18785 0.80 -1.1 4,292,305 - DDA3937_RS18785 0.80 +1.0 4,292,376 + DDA3937_RS18785 0.85 -1.5 4,292,439 + DDA3937_RS18785 0.88 -1.7 4,292,440 - DDA3937_RS18785 0.88 +0.7 4,292,447 + DDA3937_RS18785 0.89 -1.1 4,292,447 + DDA3937_RS18785 0.89 -2.4 4,292,448 - DDA3937_RS18785 0.89 -1.1 4,292,472 + +0.1 4,292,473 - -0.3 4,292,485 - -2.5 4,292,538 - +0.1 4,292,570 - +0.9 4,292,574 + -0.6 4,292,574 + +1.2 4,292,575 - +0.7 4,292,578 + -1.5 4,292,578 + +0.9 4,292,578 + -1.7 4,292,578 + -1.2 4,292,579 - -3.0 4,292,625 + -0.8 4,292,626 - -1.6 4,292,637 - -0.7 4,292,698 - +1.4 4,292,701 + +3.4 4,292,702 - -0.3 4,292,702 - +1.4 4,292,702 - -1.2 4,292,702 - -3.0 4,292,743 + -1.2 4,292,743 + -0.9 4,292,743 + -1.7 4,292,743 + -0.5 4,292,743 + +0.7 4,292,744 - -1.2 4,292,744 - -0.7 4,292,744 - +1.1 4,292,765 + -0.5 4,292,790 + +0.9 4,292,794 + +0.1 4,292,794 + -1.1 4,292,795 - -1.3 4,292,795 - -1.5 4,292,801 + +0.1 4,292,801 + -0.3 4,292,801 + -1.9 4,292,841 - -2.0 4,292,842 + -1.3 4,292,842 + -1.2 4,292,843 - -2.0 4,292,843 - +0.1 4,292,843 - -2.2 4,292,843 - -0.8 4,292,893 + -1.0 4,292,894 - -1.3 4,293,233 + DDA3937_RS18790 0.23 -1.8 4,293,355 - DDA3937_RS18790 0.35 -0.9 4,293,473 + DDA3937_RS18790 0.46 -0.9
Or see this region's nucleotide sequence