Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18540

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,239,235	+				-1.8
4,239,235	+				-2.1
4,239,236	-				-1.9
4,239,238	+				+0.7
4,239,238	+				-1.3
4,239,238	+				+0.7
4,239,238	+				+0.6
4,239,239	-				-2.0
4,239,239	-				-0.7
4,239,239	-				-1.9
4,239,242	+				-0.7
4,239,242	+				-0.3
4,239,243	-				-0.3
4,239,243	-				+1.7
4,239,264	-				-1.7
4,239,264	-				-1.2
4,239,265	+				+0.7
4,239,265	+				+0.1
4,239,265	+				-0.4
4,239,265	+				-0.8
4,239,265	+				-0.8
4,239,266	-				-2.9
4,239,266	-				-0.9
4,239,266	-				-0.8
4,239,266	-				-2.9
4,239,266	-				-1.1
4,239,306	+				-0.7
4,239,306	+				-1.8
4,239,307	-				-1.9
4,239,307	-				+1.2
4,239,356	-				-0.3
4,239,368	+				-2.7
4,239,369	-				-1.7
4,239,369	-				+0.7
4,239,369	-				-0.8
4,239,369	-				+1.0
4,239,411	+		DDA3937_RS23445	0.24	-1.3
4,239,412	-		DDA3937_RS23445	0.25	-2.3
4,239,412	-		DDA3937_RS23445	0.25	-1.8
4,239,412	-		DDA3937_RS23445	0.25	-0.4
4,239,412	-		DDA3937_RS23445	0.25	+0.8
4,239,491	+		DDA3937_RS23445	0.74	-0.7
4,239,491	+		DDA3937_RS23445	0.74	-1.4
4,239,492	-		DDA3937_RS23445	0.75	+0.2
4,239,492	-		DDA3937_RS23445	0.75	+0.5
4,239,492	-		DDA3937_RS23445	0.75	+0.9
4,239,492	-		DDA3937_RS23445	0.75	-0.0
4,239,494	+		DDA3937_RS23445	0.76	-1.8
4,239,494	+		DDA3937_RS23445	0.76	+0.1
4,239,494	+		DDA3937_RS23445	0.76	-2.8
4,239,494	+		DDA3937_RS23445	0.76	+0.7
4,239,495	-		DDA3937_RS23445	0.77	+0.2
4,239,495	-		DDA3937_RS23445	0.77	-0.0
4,239,495	-		DDA3937_RS23445	0.77	+1.4
4,239,495	-		DDA3937_RS23445	0.77	+1.5
4,239,495	-		DDA3937_RS23445	0.77	-2.1
4,239,495	-		DDA3937_RS23445	0.77	+0.0
4,239,495	-		DDA3937_RS23445	0.77	+0.6
4,239,495	-		DDA3937_RS23445	0.77	-0.3
4,239,495	-		DDA3937_RS23445	0.77	+1.1
4,239,495	-		DDA3937_RS23445	0.77	+0.9
4,239,508	-		DDA3937_RS23445	0.85	+2.0
4,239,516	+				-2.1
4,239,516	+				-1.8
4,239,516	+				-1.4
4,239,516	+				+0.9
4,239,516	+				-2.4
4,239,516	+				-1.3
4,239,516	+				-0.1
4,239,516	+				-1.5
4,239,516	+				-0.7
4,239,517	-				+0.7
4,239,517	-				+1.6
4,239,517	-				+1.2
4,239,517	-				-0.5
4,239,517	-				+0.5
4,239,517	-				+1.1
4,239,517	-				+1.1
4,239,517	-				+0.6
4,239,517	-				+1.4
4,239,517	-				+0.7
4,239,517	-				+1.2
4,239,517	-				+0.9
4,239,517	-				+0.6
4,239,517	-				+1.8
4,239,517	-				+0.8
4,239,517	-				+1.5
4,239,517	-				-0.6
4,239,517	-				+0.6
4,239,519	+				-0.8
4,239,520	-				+0.0
4,239,520	-				+2.0
4,239,520	-				+0.8
4,239,520	-				+0.7
4,239,524	+				+0.1
4,239,525	-				+1.0
4,239,765	-		DDA3937_RS23350	0.17	-1.3
4,239,770	+		DDA3937_RS23350	0.18	-1.3
4,239,771	-		DDA3937_RS23350	0.18	-1.3
4,239,844	-		DDA3937_RS23350	0.40	-3.8
4,239,887	+		DDA3937_RS23350	0.52	+0.3
4,239,947	+		DDA3937_RS23350	0.70	-0.4
4,239,948	-		DDA3937_RS23350	0.70	-1.7
4,239,948	-		DDA3937_RS23350	0.70	-0.7
4,239,949	+		DDA3937_RS23350	0.70	-1.8
4,239,949	+		DDA3937_RS23350	0.70	-1.3
4,239,949	+		DDA3937_RS23350	0.70	-2.4
4,239,949	+		DDA3937_RS23350	0.70	+1.1
4,239,949	+		DDA3937_RS23350	0.70	-0.4
4,239,949	+		DDA3937_RS23350	0.70	+0.5
4,239,950	-		DDA3937_RS23350	0.71	-0.8
4,239,950	-		DDA3937_RS23350	0.71	+0.1
4,239,950	-		DDA3937_RS23350	0.71	-1.4
4,239,953	+		DDA3937_RS23350	0.72	+1.4
4,239,953	+		DDA3937_RS23350	0.72	+2.0
4,239,953	+		DDA3937_RS23350	0.72	-1.7
4,239,995	+		DDA3937_RS23350	0.84	+0.1
4,239,996	-		DDA3937_RS23350	0.84	-1.8
4,239,996	-		DDA3937_RS23350	0.84	-0.2
4,240,068	+				+3.6
4,240,143	+				-0.9
4,240,148	+				+0.8
4,240,148	+				-1.5
4,240,150	+				-0.3
4,240,150	+				-0.3
4,241,318	+				+1.6
4,241,319	-				-1.2
4,241,319	-				+1.5
4,241,379	+				+1.5
4,241,380	-				+1.7
4,241,428	+				+1.7
4,241,557	+		DDA3937_RS18545	0.23	-0.3
4,241,557	+		DDA3937_RS18545	0.23	+1.3
4,241,558	-		DDA3937_RS18545	0.23	-2.7
4,241,558	-		DDA3937_RS18545	0.23	+0.7
4,241,693	+		DDA3937_RS18545	0.49	-1.2
4,241,693	+		DDA3937_RS18545	0.49	+0.6
4,241,693	+		DDA3937_RS18545	0.49	+0.1
4,241,695	+		DDA3937_RS18545	0.50	+1.9
4,241,695	+		DDA3937_RS18545	0.50	-1.1
4,241,695	+		DDA3937_RS18545	0.50	-0.2
4,241,897	-		DDA3937_RS18545	0.89	+0.7
4,241,950	+				-1.4
4,241,950	+				+0.1
4,241,951	-				-0.4
4,242,002	+				+0.6
4,242,002	+				-1.7
4,242,003	-				-1.8
4,242,014	-				+5.1
4,242,014	-				-0.3
4,242,051	+				+1.9
4,242,051	+				-0.7
4,242,051	+				-0.6
4,242,051	+				+1.5
4,242,051	+				+0.5
4,242,051	+				-0.7
4,242,129	+		DDA3937_RS18550	0.11	-1.1
4,242,129	+		DDA3937_RS18550	0.11	+1.7
4,242,129	+				-0.3
4,242,129	+		DDA3937_RS18550	0.11	+4.3
4,242,130	-		DDA3937_RS18550	0.11	-3.5
4,242,130	-		DDA3937_RS18550	0.11	-0.8
4,242,136	-		DDA3937_RS18550	0.12	-1.7
4,242,136	-		DDA3937_RS18550	0.12	+0.9
4,242,190	+		DDA3937_RS18550	0.20	+0.8
4,242,190	+		DDA3937_RS18550	0.20	+2.6
4,242,190	+		DDA3937_RS18550	0.20	-0.7
4,242,190	+		DDA3937_RS18550	0.20	-0.3
4,242,190	+		DDA3937_RS18550	0.20	+2.0
4,242,191	-		DDA3937_RS18550	0.20	+0.6
4,242,191	-		DDA3937_RS18550	0.20	+2.3
4,242,191	-		DDA3937_RS18550	0.20	-0.4
4,242,191	-		DDA3937_RS18550	0.20	-1.8
4,242,191	-		DDA3937_RS18550	0.20	-0.7
4,242,191	-		DDA3937_RS18550	0.20	-2.0
4,242,201	+		DDA3937_RS18550	0.21	-0.3
4,242,201	+		DDA3937_RS18550	0.21	+3.9
4,242,201	+				+0.1
4,242,201	+		DDA3937_RS18550	0.21	-0.2
4,242,201	+		DDA3937_RS18550	0.21	+1.5
4,242,201	+		DDA3937_RS18550	0.21	+0.3
4,242,201	+		DDA3937_RS18550	0.21	+1.5
4,242,202	-		DDA3937_RS18550	0.21	+1.6
4,242,202	-		DDA3937_RS18550	0.21	-0.7