Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18500

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,226,979	+				-1.3
4,226,979	+				-0.2
4,226,979	+				-1.8
4,226,980	-				-0.3
4,226,980	-				-0.5
4,227,011	-		DDA3937_RS18495	0.14	-0.3
4,227,051	+		DDA3937_RS18495	0.19	-0.2
4,227,051	+				+0.1
4,227,051	+		DDA3937_RS18495	0.19	-1.9
4,227,051	+		DDA3937_RS18495	0.19	+3.9
4,227,052	-		DDA3937_RS18495	0.19	+0.7
4,227,052	-		DDA3937_RS18495	0.19	-1.3
4,227,079	-		DDA3937_RS18495	0.23	-2.1
4,227,144	-		DDA3937_RS18495	0.32	+1.2
4,227,217	+		DDA3937_RS18495	0.42	+1.4
4,227,217	+		DDA3937_RS18495	0.42	+3.1
4,227,272	+		DDA3937_RS18495	0.49	-2.6
4,227,273	-		DDA3937_RS18495	0.50	+1.3
4,227,342	+		DDA3937_RS18495	0.59	+0.8
4,227,342	+		DDA3937_RS18495	0.59	+1.8
4,227,400	+		DDA3937_RS18495	0.67	-1.1
4,227,417	+		DDA3937_RS18495	0.69	-0.9
4,227,418	-		DDA3937_RS18495	0.69	-0.1
4,227,486	-		DDA3937_RS18495	0.79	+0.9
4,227,486	-		DDA3937_RS18495	0.79	-0.4
4,227,560	+		DDA3937_RS18495	0.89	+0.1
4,227,602	-				-0.6
4,227,677	-				+0.9
4,227,699	+				+1.4
4,227,699	+				-2.9
4,227,699	+				+2.3
4,227,699	+				+0.3
4,227,700	-				-0.1
4,227,700	-				-2.7
4,227,700	-				-0.8
4,227,700	-				+0.5
4,227,701	+				-0.5
4,227,701	+				-0.9
4,227,702	-				+0.7
4,227,702	-				-0.6
4,227,702	-				+0.1
4,227,702	-				+1.4
4,227,702	-				-3.0
4,227,702	-				+0.1
4,227,717	+				-0.7
4,227,795	+				+0.2
4,227,796	-				+4.3
4,227,796	-				+0.1
4,227,799	+				-1.3
4,227,799	+				-1.8
4,227,799	+				-1.3
4,227,800	-				+1.6
4,227,800	-				+1.8
4,227,800	-				-1.1
4,227,807	-				-1.9
4,227,828	+				-0.1
4,227,829	-				-0.3
4,227,917	+		DDA3937_RS18500	0.11	-1.1
4,227,918	-		DDA3937_RS18500	0.11	-0.7
4,227,951	+		DDA3937_RS18500	0.15	+1.5
4,227,951	+		DDA3937_RS18500	0.15	+1.7
4,228,090	+		DDA3937_RS18500	0.31	+1.4
4,228,090	+		DDA3937_RS18500	0.31	+0.3
4,228,090	+		DDA3937_RS18500	0.31	-1.1
4,228,090	+		DDA3937_RS18500	0.31	+2.8
4,228,090	+		DDA3937_RS18500	0.31	+0.1
4,228,091	-		DDA3937_RS18500	0.32	-1.6
4,228,091	-		DDA3937_RS18500	0.32	-2.9
4,228,091	-		DDA3937_RS18500	0.32	+1.5
4,228,091	-		DDA3937_RS18500	0.32	-2.3
4,228,091	-		DDA3937_RS18500	0.32	-1.3
4,228,161	+		DDA3937_RS18500	0.40	-0.3
4,228,162	-		DDA3937_RS18500	0.40	-3.0
4,228,162	-		DDA3937_RS18500	0.40	-1.9
4,228,162	-		DDA3937_RS18500	0.40	-3.9
4,228,196	+		DDA3937_RS18500	0.44	-2.0
4,228,196	+		DDA3937_RS18500	0.44	-1.7
4,228,197	-		DDA3937_RS18500	0.44	+1.6
4,228,197	-		DDA3937_RS18500	0.44	-0.3
4,228,204	+		DDA3937_RS18500	0.45	+0.3
4,228,204	+		DDA3937_RS18500	0.45	-0.7
4,228,204	+		DDA3937_RS18500	0.45	-1.8
4,228,204	+		DDA3937_RS18500	0.45	-1.0
4,228,204	+		DDA3937_RS18500	0.45	+0.6
4,228,204	+		DDA3937_RS18500	0.45	+0.9
4,228,204	+		DDA3937_RS18500	0.45	-0.9
4,228,204	+		DDA3937_RS18500	0.45	+4.1
4,228,204	+		DDA3937_RS18500	0.45	+0.4
4,228,205	-		DDA3937_RS18500	0.45	-2.4
4,228,205	-		DDA3937_RS18500	0.45	+1.4
4,228,205	-		DDA3937_RS18500	0.45	-1.7
4,228,205	-		DDA3937_RS18500	0.45	-2.5
4,228,205	-		DDA3937_RS18500	0.45	+0.3
4,228,205	-		DDA3937_RS18500	0.45	-1.5
4,228,205	-		DDA3937_RS18500	0.45	-1.3
4,228,205	-		DDA3937_RS18500	0.45	-1.5
4,228,205	-		DDA3937_RS18500	0.45	+2.2
4,228,205	-		DDA3937_RS18500	0.45	-1.3
4,228,205	-		DDA3937_RS18500	0.45	+1.3
4,228,218	+		DDA3937_RS18500	0.47	-0.6
4,228,218	+		DDA3937_RS18500	0.47	-2.1
4,228,218	+		DDA3937_RS18500	0.47	+1.5
4,228,218	+		DDA3937_RS18500	0.47	-1.0
4,228,219	-		DDA3937_RS18500	0.47	-0.3
4,228,219	-		DDA3937_RS18500	0.47	+2.4
4,228,219	-		DDA3937_RS18500	0.47	-0.7
4,228,219	-		DDA3937_RS18500	0.47	+0.7
4,228,219	-		DDA3937_RS18500	0.47	-0.9
4,228,219	-		DDA3937_RS18500	0.47	+1.3
4,228,237	+		DDA3937_RS18500	0.49	-1.7
4,228,417	-		DDA3937_RS18500	0.70	-1.2
4,228,446	+		DDA3937_RS18500	0.74	-0.9
4,228,447	-		DDA3937_RS18500	0.74	-1.3
4,228,538	-		DDA3937_RS18500	0.85	+2.4
4,228,554	-		DDA3937_RS18500	0.87	+1.1
4,228,569	-		DDA3937_RS18500	0.89	+1.0
4,228,569	-		DDA3937_RS18500	0.89	-1.7
4,228,630	+				-2.5
4,228,630	+				-2.2
4,228,630	+				+1.9
4,228,631	-				+0.7
4,228,631	-				+1.7
4,228,631	-				-0.7
4,228,631	-				+0.7
4,228,631	-				+0.1
4,228,631	-				+2.3
4,228,640	+				-0.5
4,228,641	-				-2.0
4,228,641	-				+0.4
4,228,664	+				+1.9
4,228,722	-				+1.3
4,228,734	-				+0.7
4,228,781	+				-0.8
4,228,781	+				-0.3
4,228,781	+				+0.3
4,228,782	-				-0.3
4,228,782	-				+2.2
4,228,782	-				-0.2
4,228,782	-				-1.5
4,228,782	-				+0.9
4,228,785	-				-0.7
4,228,785	-				-1.1
4,228,785	-				+0.6
4,228,785	-				+0.7
4,228,791	+				+0.8
4,228,919	+		DDA3937_RS18505	0.15	-0.1
4,229,032	-		DDA3937_RS18505	0.28	+0.1
4,229,041	+		DDA3937_RS18505	0.29	+1.9
4,229,087	+		DDA3937_RS18505	0.34	+2.3
4,229,088	-		DDA3937_RS18505	0.34	-1.7
4,229,104	-		DDA3937_RS18505	0.36	-1.0
4,229,104	-		DDA3937_RS18505	0.36	+0.7
4,229,136	+		DDA3937_RS18505	0.40	+0.7
4,229,136	+		DDA3937_RS18505	0.40	-1.7
4,229,137	-		DDA3937_RS18505	0.40	-3.0
4,229,137	-		DDA3937_RS18505	0.40	-0.6
4,229,158	-		DDA3937_RS18505	0.42	-0.1
4,229,436	+		DDA3937_RS18505	0.74	-1.9
4,229,437	-		DDA3937_RS18505	0.74	-0.1
4,229,526	+		DDA3937_RS18505	0.84	+0.7
4,229,526	+		DDA3937_RS18505	0.84	+0.7
4,229,526	+		DDA3937_RS18505	0.84	-0.4
4,229,526	+		DDA3937_RS18505	0.84	+1.7
4,229,526	+		DDA3937_RS18505	0.84	-0.0
4,229,526	+		DDA3937_RS18505	0.84	-0.3
4,229,526	+		DDA3937_RS18505	0.84	+0.7
4,229,527	-		DDA3937_RS18505	0.84	+1.3
4,229,527	-		DDA3937_RS18505	0.84	-2.3
4,229,527	-		DDA3937_RS18505	0.84	+0.8
4,229,588	+				-3.4
4,229,588	+				+0.7
4,229,601	+				-3.5
4,229,601	+				-2.1
4,229,601	+				-0.3
4,229,602	-				-1.5
4,229,602	-				-2.3
4,229,602	-				-0.5
4,229,602	-				-1.4
4,229,602	-				-1.3
4,229,602	-				+0.1
4,229,650	+				-0.9
4,229,650	+				+0.6
4,229,650	+				-3.3