Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18140

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,140,996	+		DDA3937_RS18135	0.46	+3.6
4,140,996	+		DDA3937_RS18135	0.46	+4.1
4,140,997	-		DDA3937_RS18135	0.46	-0.8
4,141,227	+		DDA3937_RS18135	0.72	+4.1
4,141,227	+		DDA3937_RS18135	0.72	+2.6
4,141,229	+		DDA3937_RS18135	0.72	+2.9
4,141,229	+		DDA3937_RS18135	0.72	+2.2
4,141,278	+				+3.1
4,141,278	+		DDA3937_RS18135	0.78	+2.6
4,141,280	+		DDA3937_RS18135	0.78	+4.6
4,141,280	+		DDA3937_RS18135	0.78	+3.6
4,141,281	-		DDA3937_RS18135	0.78	+3.9
4,141,397	-				+4.3
4,141,444	-				+2.5
4,141,458	+				+1.9
4,141,458	+				+2.3
4,141,459	-				+1.6
4,141,491	-				-0.7
4,141,491	-				+2.8
4,141,491	-				+0.1
4,141,533	+				+2.5
4,141,534	-				-0.3
4,141,534	-				-1.2
4,141,534	-				-0.5
4,141,534	-				+2.5
4,141,616	-				-3.3
4,141,689	+				+0.1
4,141,694	+				-0.4
4,141,699	-				+0.9
4,141,705	-				+2.8
4,141,715	+				-0.4
4,141,865	+				-3.5
4,142,030	+				-0.9
4,142,030	+				-0.1
4,142,030	+				+3.5
4,142,030	+				-0.3
4,142,030	+				-2.8
4,142,031	-				-0.4
4,142,031	-				-1.0
4,142,063	+				-0.8
4,142,063	+				+0.6
4,142,063	+				+0.6
4,142,064	-				+1.1
4,142,064	-				-1.3
4,142,064	-				+2.6
4,142,064	-				+1.0
4,142,145	-		DDA3937_RS18140	0.15	-1.8
4,142,145	-		DDA3937_RS18140	0.15	-1.0
4,142,145	-		DDA3937_RS18140	0.15	-0.8
4,142,162	+		DDA3937_RS18140	0.16	-1.1
4,142,162	+		DDA3937_RS18140	0.16	-1.4
4,142,162	+		DDA3937_RS18140	0.16	-2.5
4,142,162	+		DDA3937_RS18140	0.16	-1.1
4,142,163	-		DDA3937_RS18140	0.16	+1.7
4,142,163	-		DDA3937_RS18140	0.16	+2.0
4,142,163	-		DDA3937_RS18140	0.16	-1.8
4,142,163	-		DDA3937_RS18140	0.16	-3.1
4,142,165	+		DDA3937_RS18140	0.16	-3.8
4,142,166	-		DDA3937_RS18140	0.17	+2.3
4,142,166	-		DDA3937_RS18140	0.17	-0.6
4,142,408	+		DDA3937_RS18140	0.34	-1.5
4,142,408	+		DDA3937_RS18140	0.34	-1.5
4,142,408	+		DDA3937_RS18140	0.34	-2.6
4,142,409	-		DDA3937_RS18140	0.34	-2.1
4,142,411	+		DDA3937_RS18140	0.34	+0.6
4,142,411	+		DDA3937_RS18140	0.34	+0.8
4,142,411	+		DDA3937_RS18140	0.34	-0.9
4,142,449	+		DDA3937_RS18140	0.37	+1.0
4,142,450	-		DDA3937_RS18140	0.37	-2.4
4,142,450	-		DDA3937_RS18140	0.37	+0.3
4,142,450	-		DDA3937_RS18140	0.37	-4.1
4,142,558	+		DDA3937_RS18140	0.45	-0.9
4,142,559	-		DDA3937_RS18140	0.45	-0.2
4,142,629	+		DDA3937_RS18140	0.50	+1.4
4,142,691	-		DDA3937_RS18140	0.54	-0.9
4,142,710	+		DDA3937_RS18140	0.55	-0.1
4,142,711	-		DDA3937_RS18140	0.55	+0.3
4,142,745	+		DDA3937_RS18140	0.58	+0.0
4,142,745	+		DDA3937_RS18140	0.58	-0.7
4,142,746	-		DDA3937_RS18140	0.58	+0.6
4,142,786	-		DDA3937_RS18140	0.61	-0.7
4,142,831	+				+0.1
4,142,832	-		DDA3937_RS18140	0.64	+0.8
4,142,832	-		DDA3937_RS18140	0.64	+0.8
4,142,832	-		DDA3937_RS18140	0.64	-1.2
4,142,900	+		DDA3937_RS18140	0.69	-0.6
4,142,900	+		DDA3937_RS18140	0.69	+1.6
4,142,900	+		DDA3937_RS18140	0.69	-2.7
4,142,900	+		DDA3937_RS18140	0.69	-0.4
4,142,901	-		DDA3937_RS18140	0.69	-1.5
4,142,909	+		DDA3937_RS18140	0.70	-0.4
4,142,910	-		DDA3937_RS18140	0.70	+2.4
4,142,930	+		DDA3937_RS18140	0.71	+0.5
4,142,931	-		DDA3937_RS18140	0.71	+2.0
4,142,931	-		DDA3937_RS18140	0.71	+0.6
4,142,931	-		DDA3937_RS18140	0.71	-0.5
4,143,062	-		DDA3937_RS18140	0.81	-0.7
4,143,071	+		DDA3937_RS18140	0.81	-0.4
4,143,071	+				+1.6
4,143,072	-		DDA3937_RS18140	0.81	-0.9
4,143,111	+		DDA3937_RS18140	0.84	+0.6
4,143,111	+		DDA3937_RS18140	0.84	-1.4
4,143,112	-		DDA3937_RS18140	0.84	+1.8
4,143,168	+		DDA3937_RS18140	0.88	+0.1
4,143,169	-		DDA3937_RS18140	0.88	+0.1
4,143,169	-		DDA3937_RS18140	0.88	-2.3
4,143,169	-		DDA3937_RS18140	0.88	+0.5
4,143,194	+		DDA3937_RS18140	0.90	-0.9
4,143,194	+		DDA3937_RS18140	0.90	-2.3
4,143,194	+		DDA3937_RS18140	0.90	+0.6
4,143,194	+		DDA3937_RS18140	0.90	+2.5
4,143,194	+		DDA3937_RS18140	0.90	-0.3
4,143,195	-				+1.9
4,143,195	-				-0.1
4,143,197	-				+2.7
4,143,215	+				+1.5
4,143,215	+				+1.1
4,143,216	-				-0.9
4,143,216	-				-0.9
4,143,216	-				-3.4
4,143,216	-				+0.6
4,143,281	+				+1.9
4,143,281	+				+0.6
4,143,281	+				-0.5
4,143,281	+				-1.2
4,143,281	+				+1.9
4,143,282	-				-0.4
4,143,282	-				-1.7
4,143,282	-				+1.4
4,143,282	-				+1.4
4,143,403	+				-1.1
4,143,468	+				-0.7
4,143,528	-		DDA3937_RS18145	0.38	+0.5
4,143,603	+		DDA3937_RS18145	0.86	+1.4
4,143,604	-		DDA3937_RS18145	0.86	+0.2
4,143,604	-		DDA3937_RS18145	0.86	-1.4
4,143,604	-		DDA3937_RS18145	0.86	-0.9
4,143,625	+				-0.4
4,143,625	+				+0.6
4,143,626	-				+0.0
4,143,626	-				+0.6
4,143,626	-				+1.2
4,143,626	-				+0.3
4,143,626	-				+0.7
4,143,689	+				-1.4
4,143,691	+				-0.7
4,143,691	+				-1.2
4,143,736	+				-0.3
4,143,737	-				-2.7
4,143,854	-				+1.1
4,143,947	+		DDA3937_RS18150	0.13	-0.4
4,143,947	+		DDA3937_RS18150	0.13	-0.4
4,143,947	+		DDA3937_RS18150	0.13	-0.8
4,143,949	+		DDA3937_RS18150	0.13	-0.9
4,144,112	+		DDA3937_RS18150	0.22	+3.8
4,144,112	+		DDA3937_RS18150	0.22	+1.0
4,144,112	+		DDA3937_RS18150	0.22	+0.1
4,144,112	+		DDA3937_RS18150	0.22	+1.2
4,144,113	-		DDA3937_RS18150	0.23	+1.2
4,144,113	-		DDA3937_RS18150	0.23	+0.2
4,144,113	-		DDA3937_RS18150	0.23	-0.5
4,144,205	+		DDA3937_RS18150	0.28	+1.5
4,144,206	+		DDA3937_RS18150	0.28	-0.9
4,144,207	-		DDA3937_RS18150	0.28	-0.0
4,144,284	-		DDA3937_RS18150	0.33	+0.3