Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17955

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,098,330	+				-0.1
4,098,331	-				+0.4
4,098,340	+				+2.3
4,098,347	+				+1.4
4,098,348	-				-0.3
4,098,348	-				+0.3
4,098,348	-				+0.8
4,098,348	-				+1.1
4,098,351	+				-1.5
4,098,351	+				-0.4
4,098,352	-				-1.2
4,098,379	+				-0.3
4,098,379	+				-3.0
4,098,379	+				-0.3
4,098,379	+				+1.1
4,098,379	+				-1.1
4,098,379	+				-0.4
4,098,379	+				+1.8
4,098,380	-				-1.2
4,098,380	-				+0.1
4,098,380	-				+0.5
4,098,380	-				+0.7
4,098,380	-				-0.4
4,098,424	+		DDA3937_RS17950	0.15	-1.7
4,098,424	+		DDA3937_RS17950	0.15	-1.2
4,098,449	+		DDA3937_RS17950	0.17	+0.3
4,098,450	-		DDA3937_RS17950	0.18	-2.3
4,098,463	+		DDA3937_RS17950	0.19	-3.1
4,098,472	+		DDA3937_RS17950	0.20	+0.1
4,098,508	+		DDA3937_RS17950	0.24	-0.6
4,098,508	+		DDA3937_RS17950	0.24	-0.4
4,098,509	-		DDA3937_RS17950	0.24	-1.6
4,098,509	-		DDA3937_RS17950	0.24	+1.3
4,098,509	-		DDA3937_RS17950	0.24	-0.7
4,098,509	-		DDA3937_RS17950	0.24	-1.5
4,098,514	+		DDA3937_RS17950	0.25	+0.1
4,098,514	+		DDA3937_RS17950	0.25	-1.2
4,098,514	+		DDA3937_RS17950	0.25	-0.1
4,098,514	+		DDA3937_RS17950	0.25	-1.1
4,098,515	-		DDA3937_RS17950	0.25	-0.9
4,098,515	-		DDA3937_RS17950	0.25	-2.5
4,098,515	-				+3.4
4,098,515	-		DDA3937_RS17950	0.25	+0.7
4,098,515	-		DDA3937_RS17950	0.25	-2.9
4,098,621	+		DDA3937_RS17950	0.37	+0.1
4,098,622	-		DDA3937_RS17950	0.38	+1.5
4,098,667	+		DDA3937_RS17950	0.43	-1.2
4,098,667	+		DDA3937_RS17950	0.43	-0.9
4,098,667	+		DDA3937_RS17950	0.43	-2.5
4,098,667	+		DDA3937_RS17950	0.43	-1.2
4,098,668	-		DDA3937_RS17950	0.43	-0.0
4,098,668	-		DDA3937_RS17950	0.43	-1.2
4,098,688	+		DDA3937_RS17950	0.45	-2.6
4,098,688	+		DDA3937_RS17950	0.45	-1.2
4,098,688	+		DDA3937_RS17950	0.45	+0.5
4,098,688	+				-0.7
4,098,689	-		DDA3937_RS17950	0.45	+0.6
4,098,689	-		DDA3937_RS17950	0.45	-1.5
4,098,730	+		DDA3937_RS17950	0.50	-0.5
4,098,730	+		DDA3937_RS17950	0.50	-0.7
4,098,731	-		DDA3937_RS17950	0.50	-1.9
4,098,731	-		DDA3937_RS17950	0.50	-2.9
4,098,731	-		DDA3937_RS17950	0.50	+0.4
4,098,734	+		DDA3937_RS17950	0.50	+0.8
4,098,734	+		DDA3937_RS17950	0.50	-0.9
4,098,734	+		DDA3937_RS17950	0.50	+0.7
4,098,734	+		DDA3937_RS17950	0.50	+1.2
4,098,734	+		DDA3937_RS17950	0.50	+0.1
4,098,734	+		DDA3937_RS17950	0.50	+1.4
4,098,734	+		DDA3937_RS17950	0.50	+2.1
4,098,734	+		DDA3937_RS17950	0.50	+0.9
4,098,734	+		DDA3937_RS17950	0.50	+0.1
4,098,734	+				-0.7
4,098,735	-		DDA3937_RS17950	0.51	-0.2
4,098,735	-		DDA3937_RS17950	0.51	+1.1
4,098,735	-		DDA3937_RS17950	0.51	-1.0
4,098,735	-		DDA3937_RS17950	0.51	-3.0
4,098,735	-		DDA3937_RS17950	0.51	-0.7
4,098,735	-		DDA3937_RS17950	0.51	-0.9
4,098,735	-		DDA3937_RS17950	0.51	-1.5
4,098,786	+		DDA3937_RS17950	0.56	+3.9
4,098,786	+		DDA3937_RS17950	0.56	-1.1
4,098,786	+		DDA3937_RS17950	0.56	-0.4
4,098,787	-		DDA3937_RS17950	0.57	+0.2
4,098,790	+		DDA3937_RS17950	0.57	-1.8
4,098,790	+		DDA3937_RS17950	0.57	-1.3
4,098,790	+		DDA3937_RS17950	0.57	+0.9
4,098,790	+		DDA3937_RS17950	0.57	+0.6
4,098,790	+		DDA3937_RS17950	0.57	+1.0
4,098,790	+		DDA3937_RS17950	0.57	-2.1
4,098,790	+		DDA3937_RS17950	0.57	-2.7
4,098,791	-		DDA3937_RS17950	0.57	-1.2
4,098,791	-		DDA3937_RS17950	0.57	-1.2
4,098,791	-		DDA3937_RS17950	0.57	+1.3
4,098,799	+		DDA3937_RS17950	0.58	-2.2
4,098,814	+		DDA3937_RS17950	0.60	-0.7
4,098,814	+		DDA3937_RS17950	0.60	-1.9
4,098,815	-		DDA3937_RS17950	0.60	+2.1
4,098,865	+		DDA3937_RS17950	0.66	-2.3
4,098,872	-		DDA3937_RS17950	0.66	-1.4
4,098,907	+		DDA3937_RS17950	0.70	-1.4
4,098,907	+		DDA3937_RS17950	0.70	+1.1
4,098,907	+		DDA3937_RS17950	0.70	+0.8
4,098,907	+		DDA3937_RS17950	0.70	-0.3
4,098,907	+		DDA3937_RS17950	0.70	+0.5
4,098,908	-		DDA3937_RS17950	0.71	+0.6
4,098,908	-		DDA3937_RS17950	0.71	-1.9
4,098,948	+		DDA3937_RS17950	0.75	+0.9
4,098,996	+		DDA3937_RS17950	0.81	-2.3
4,099,012	+		DDA3937_RS17950	0.83	-2.0
4,099,012	+		DDA3937_RS17950	0.83	-0.9
4,099,012	+		DDA3937_RS17950	0.83	+0.3
4,099,013	-		DDA3937_RS17950	0.83	-1.1
4,099,013	-		DDA3937_RS17950	0.83	-0.4
4,099,027	+		DDA3937_RS17950	0.84	-1.4
4,099,027	+		DDA3937_RS17950	0.84	+1.5
4,099,046	-		DDA3937_RS17950	0.87	-1.7
4,099,046	-		DDA3937_RS17950	0.87	+0.1
4,099,133	-				-0.9
4,099,133	-				-3.0
4,099,135	+				-1.2
4,099,135	+				-2.3
4,099,136	-				-1.4
4,099,136	-				+1.2
4,099,150	+				-1.4
4,099,159	+				+0.4
4,099,159	+				-2.5
4,099,159	+				-0.5
4,099,160	-				-0.4
4,099,160	-				+0.6
4,099,160	-				-0.4
4,099,160	-				-1.4
4,099,217	+				-0.8
4,099,245	-				+2.0
4,099,245	-				+0.8
4,099,330	-				+0.9
4,099,330	-				+1.4
4,099,330	-				-2.7
4,099,403	+		DDA3937_RS17955	0.10	+0.8
4,099,403	+		DDA3937_RS17955	0.10	+1.4
4,099,403	+		DDA3937_RS17955	0.10	+1.0
4,099,403	+		DDA3937_RS17955	0.10	-1.4
4,099,404	-		DDA3937_RS17955	0.10	-0.9
4,099,404	-		DDA3937_RS17955	0.10	+2.6
4,099,404	-		DDA3937_RS17955	0.10	-0.9
4,099,444	-		DDA3937_RS17955	0.15	+1.9
4,099,647	-		DDA3937_RS17955	0.38	-0.9
4,099,647	-		DDA3937_RS17955	0.38	+0.0
4,099,720	+		DDA3937_RS17955	0.46	-1.4
4,099,720	+		DDA3937_RS17955	0.46	-0.8
4,099,720	+		DDA3937_RS17955	0.46	-0.9
4,099,721	-		DDA3937_RS17955	0.46	-0.1
4,099,797	+		DDA3937_RS17955	0.54	-1.5
4,099,798	-		DDA3937_RS17955	0.55	+0.3
4,099,802	-		DDA3937_RS17955	0.55	-1.5
4,099,802	-		DDA3937_RS17955	0.55	+1.4
4,099,802	-		DDA3937_RS17955	0.55	-0.7
4,099,809	-		DDA3937_RS17955	0.56	+1.2
4,100,137	+				+1.2
4,100,137	+				-1.0
4,100,137	+				+1.8
4,100,137	+				+0.6
4,100,137	+				+1.2
4,100,137	+				+2.0
4,100,137	+				+1.3
4,100,137	+				+0.1
4,100,137	+				-0.4
4,100,137	+				+1.6
4,100,137	+				-0.4
4,100,137	+				-0.9
4,100,138	-				-0.3
4,100,138	-				+1.2
4,100,138	-				+1.1
4,100,138	-				-0.5
4,100,138	-				-0.4
4,100,138	-				-1.3
4,100,138	-				-1.5
4,100,138	-				+0.9
4,100,139	+				-0.4
4,100,139	+				+0.5
4,100,139	+				+3.6
4,100,139	+				-1.0
4,100,139	+				+0.5
4,100,140	-				-0.7
4,100,140	-				+0.6
4,100,140	-				-1.4
4,100,196	+				+0.5
4,100,196	+				+1.2
4,100,197	-				-1.8
4,100,197	-				-0.4
4,100,197	-				-0.5
4,100,200	+				-0.7
4,100,201	-				+1.1
4,100,226	+				-1.4
4,100,227	-				-0.6
4,100,227	-				+1.4
4,100,488	-				-1.0
4,100,488	-				+1.0
4,100,488	-				+1.2
4,100,549	-		DDA3937_RS17960	0.19	+0.2
4,100,557	+		DDA3937_RS17960	0.21	+0.2
4,100,557	+		DDA3937_RS17960	0.21	-0.6
4,100,558	-		DDA3937_RS17960	0.21	-1.4
4,100,607	+		DDA3937_RS17960	0.32	-1.5
4,100,607	+		DDA3937_RS17960	0.32	-0.8
4,100,638	-		DDA3937_RS17960	0.39	+1.8
4,100,701	+		DDA3937_RS17960	0.53	-1.2
4,100,701	+		DDA3937_RS17960	0.53	-1.2
4,100,701	+		DDA3937_RS17960	0.53	-0.0
4,100,702	-		DDA3937_RS17960	0.54	-0.3
4,100,778	+		DDA3937_RS17960	0.71	-0.8
4,100,779	-		DDA3937_RS17960	0.71	+1.1
4,100,853	+		DDA3937_RS17960	0.88	-1.9
4,100,853	+		DDA3937_RS17960	0.88	+0.8
4,100,854	-		DDA3937_RS17960	0.88	+1.6
4,100,912	+				-0.7
4,100,912	+				-0.3
4,100,913	-				+1.8
4,100,913	-				+1.1
4,100,930	-				-0.4
4,100,947	+				+2.9
4,100,947	+				-2.7
4,100,947	+				-0.5
4,100,947	+				+0.8
4,100,947	+				+0.4
4,100,948	-				+0.2
4,100,948	-				-1.4
4,100,948	-				-1.2
4,101,113	+		DDA3937_RS17965	0.14	-0.7
4,101,113	+		DDA3937_RS17965	0.14	-0.2
4,101,113	+		DDA3937_RS17965	0.14	-0.5
4,101,114	-		DDA3937_RS17965	0.14	-0.4
4,101,114	-		DDA3937_RS17965	0.14	+1.3
4,101,114	-		DDA3937_RS17965	0.14	+0.9
4,101,114	-		DDA3937_RS17965	0.14	-2.2
4,101,147	+		DDA3937_RS17965	0.16	-1.2
4,101,169	+		DDA3937_RS17965	0.18	+0.1