Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17890

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,079,658	-				-0.7
4,079,683	-				-1.5
4,079,700	-				+1.5
4,079,700	-				+1.2
4,079,706	-				+1.6
4,079,744	-				+2.9
4,079,765	+				-2.7
4,079,778	+				+0.0
4,079,779	-				-2.8
4,079,798	+				+1.3
4,079,798	+				-1.1
4,079,798	+				-3.0
4,079,798	+				-0.4
4,079,798	+				+1.0
4,079,799	-				+1.1
4,079,799	-				+0.7
4,079,799	-				-3.8
4,079,799	-				+0.6
4,079,799	-				-0.1
4,079,799	-				-0.4
4,079,799	-				+1.2
4,079,799	-				-0.4
4,079,799	-				+0.7
4,079,799	-				-1.2
4,079,817	+				+1.6
4,079,817	+				+2.5
4,079,817	+				-1.4
4,079,868	+				-2.2
4,079,869	-				+0.9
4,080,047	+				+2.8
4,080,047	+				-0.9
4,080,047	+				-0.5
4,080,047	+				+1.8
4,080,047	+				+0.1
4,080,047	+				-0.2
4,080,140	+		DDA3937_RS17890	0.18	-1.1
4,080,140	+		DDA3937_RS17890	0.18	+1.1
4,080,140	+		DDA3937_RS17890	0.18	+0.2
4,080,140	+		DDA3937_RS17890	0.18	-1.4
4,080,140	+		DDA3937_RS17890	0.18	-1.7
4,080,141	-		DDA3937_RS17890	0.18	-1.8
4,080,141	-		DDA3937_RS17890	0.18	+1.6
4,080,287	+		DDA3937_RS17890	0.35	+0.5
4,080,399	+		DDA3937_RS17890	0.48	+0.5
4,080,410	-		DDA3937_RS17890	0.50	+0.2
4,080,451	+		DDA3937_RS17890	0.54	-1.8
4,080,617	-		DDA3937_RS17890	0.74	+0.5
4,080,617	-		DDA3937_RS17890	0.74	-1.9
4,080,617	-		DDA3937_RS17890	0.74	-0.7
4,080,617	-		DDA3937_RS17890	0.74	+0.8
4,080,701	-		DDA3937_RS17890	0.84	-1.4
4,080,701	-		DDA3937_RS17890	0.84	-2.8
4,080,721	+		DDA3937_RS17890	0.86	-0.1
4,080,721	+		DDA3937_RS17890	0.86	-1.5
4,080,722	-		DDA3937_RS17890	0.86	-0.1
4,080,722	-		DDA3937_RS17890	0.86	-1.2
4,080,722	-		DDA3937_RS17890	0.86	+1.2
4,080,722	-		DDA3937_RS17890	0.86	+0.1
4,080,722	-		DDA3937_RS17890	0.86	-0.1
4,080,781	+				+0.1
4,080,835	+				-1.4
4,080,835	+				+0.5
4,080,835	+				-0.1
4,080,835	+				+2.2
4,080,835	+				+0.3
4,080,835	+				+0.7
4,080,835	+				+2.5
4,080,835	+				+0.4
4,080,836	-				-0.4
4,080,836	-				+1.9
4,080,836	-				-3.7
4,080,836	-				-0.4
4,080,836	-				-0.7
4,080,836	-				-0.5
4,080,839	+				-2.4
4,080,839	+				+0.2
4,080,839	+				+1.6
4,080,839	+				+1.3
4,080,839	+				-0.2
4,080,840	-				-0.8
4,080,840	-				-0.4
4,080,840	-				-0.7
4,080,910	+				+0.4
4,080,934	+				-3.2
4,080,934	+				+1.3
4,080,934	+				-1.4
4,080,935	-				-1.9
4,080,935	-				-2.1
4,080,935	-				-1.7
4,080,935	-				-1.7
4,080,935	-				-0.4
4,080,958	+				-0.2
4,080,958	+				+1.1
4,080,958	+				+1.1
4,080,986	+				+0.3
4,080,987	-				-0.7
4,081,019	+				+2.0
4,081,019	+				-3.6
4,081,019	+				-0.4
4,081,020	-				-1.2
4,081,020	-				-2.4
4,081,111	+				-0.8
4,081,111	+				-0.1
4,081,111	+				+0.1
4,081,111	+				+2.2
4,081,111	+				+0.8
4,081,111	+				+0.1
4,081,111	+				+1.2
4,081,111	+				-2.7
4,081,111	+				-3.3
4,081,112	-				+0.4
4,081,112	-				-2.1
4,081,112	-				+1.2
4,081,112	-				-2.5
4,081,112	-				+1.6
4,081,112	-				-1.5
4,081,187	-		DDA3937_RS17895	0.12	-0.1
4,081,192	+		DDA3937_RS17895	0.12	-2.1
4,081,192	+		DDA3937_RS17895	0.12	+0.6
4,081,192	+		DDA3937_RS17895	0.12	+0.7
4,081,193	-		DDA3937_RS17895	0.12	+0.9
4,081,193	-		DDA3937_RS17895	0.12	-3.5
4,081,193	-		DDA3937_RS17895	0.12	+0.3
4,081,193	-		DDA3937_RS17895	0.12	+1.4
4,081,266	+		DDA3937_RS17895	0.16	+0.1
4,081,266	+		DDA3937_RS17895	0.16	-0.4
4,081,267	-		DDA3937_RS17895	0.16	-2.1
4,081,284	-		DDA3937_RS17895	0.16	-1.2
4,081,307	+		DDA3937_RS17895	0.18	-0.8
4,081,308	-		DDA3937_RS17895	0.18	+0.0
4,081,335	+		DDA3937_RS17895	0.19	-2.6
4,081,335	+		DDA3937_RS17895	0.19	+1.8
4,081,336	-		DDA3937_RS17895	0.19	-0.4
4,081,336	-		DDA3937_RS17895	0.19	+0.6
4,081,336	-		DDA3937_RS17895	0.19	+2.2
4,081,336	-		DDA3937_RS17895	0.19	+2.1
4,081,336	-		DDA3937_RS17895	0.19	+0.0
4,081,349	+		DDA3937_RS17895	0.19	-1.4
4,081,349	+		DDA3937_RS17895	0.19	-1.2
4,081,349	+		DDA3937_RS17895	0.19	-0.5
4,081,349	+		DDA3937_RS17895	0.19	+1.2
4,081,349	+		DDA3937_RS17895	0.19	+0.9
4,081,350	-		DDA3937_RS17895	0.19	-0.2
4,081,442	-		DDA3937_RS17895	0.23	-1.6
4,081,499	+		DDA3937_RS17895	0.26	+0.8
4,081,499	+		DDA3937_RS17895	0.26	-0.9
4,081,500	-		DDA3937_RS17895	0.26	+0.0
4,081,507	+		DDA3937_RS17895	0.26	+1.8
4,081,522	+		DDA3937_RS17895	0.27	-1.8
4,081,523	-		DDA3937_RS17895	0.27	+0.2
4,081,523	-		DDA3937_RS17895	0.27	-1.5
4,081,523	-		DDA3937_RS17895	0.27	-3.1
4,081,528	-		DDA3937_RS17895	0.27	-1.4
4,081,618	+		DDA3937_RS17895	0.31	+1.2
4,081,619	-		DDA3937_RS17895	0.31	+0.2
4,081,626	-		DDA3937_RS17895	0.32	+0.7
4,081,626	-		DDA3937_RS17895	0.32	-2.4
4,081,648	+		DDA3937_RS17895	0.32	+1.5
4,081,649	-		DDA3937_RS17895	0.33	-2.3
4,081,649	-		DDA3937_RS17895	0.33	+0.6
4,081,669	+		DDA3937_RS17895	0.33	-1.0
4,081,676	+		DDA3937_RS17895	0.34	-0.1
4,081,676	+		DDA3937_RS17895	0.34	-0.8
4,081,676	+		DDA3937_RS17895	0.34	-1.5
4,081,677	-		DDA3937_RS17895	0.34	+0.6
4,081,677	-		DDA3937_RS17895	0.34	-0.4
4,081,677	-		DDA3937_RS17895	0.34	-3.2
4,081,677	-		DDA3937_RS17895	0.34	-0.9
4,081,677	-		DDA3937_RS17895	0.34	+0.6
4,081,677	-		DDA3937_RS17895	0.34	-0.6
4,081,677	-		DDA3937_RS17895	0.34	+0.2
4,081,677	-		DDA3937_RS17895	0.34	-2.1
4,081,678	+		DDA3937_RS17895	0.34	-2.4
4,081,678	+		DDA3937_RS17895	0.34	+1.6
4,081,678	+		DDA3937_RS17895	0.34	-0.1
4,081,678	+		DDA3937_RS17895	0.34	-0.4
4,081,678	+		DDA3937_RS17895	0.34	-0.7
4,081,678	+		DDA3937_RS17895	0.34	+1.0
4,081,678	+		DDA3937_RS17895	0.34	-1.8
4,081,678	+		DDA3937_RS17895	0.34	-0.9
4,081,678	+		DDA3937_RS17895	0.34	+0.9
4,081,678	+		DDA3937_RS17895	0.34	-0.3
4,081,678	+		DDA3937_RS17895	0.34	+0.5
4,081,678	+		DDA3937_RS17895	0.34	+1.3
4,081,679	-		DDA3937_RS17895	0.34	-0.2
4,081,679	-		DDA3937_RS17895	0.34	-0.7
4,081,679	-		DDA3937_RS17895	0.34	-2.6
4,081,679	-		DDA3937_RS17895	0.34	-2.8
4,081,679	-		DDA3937_RS17895	0.34	-1.7
4,081,679	-		DDA3937_RS17895	0.34	-2.4
4,081,679	-		DDA3937_RS17895	0.34	-3.0
4,081,679	-		DDA3937_RS17895	0.34	+1.1
4,081,679	-		DDA3937_RS17895	0.34	-3.1
4,081,679	-		DDA3937_RS17895	0.34	-1.4
4,081,698	+		DDA3937_RS17895	0.35	-0.4
4,081,698	+		DDA3937_RS17895	0.35	-0.7
4,081,698	+		DDA3937_RS17895	0.35	-0.0
4,081,698	+		DDA3937_RS17895	0.35	-2.0
4,081,698	+		DDA3937_RS17895	0.35	-2.9
4,081,699	-		DDA3937_RS17895	0.35	+1.3
4,081,699	-		DDA3937_RS17895	0.35	-0.4
4,081,699	-		DDA3937_RS17895	0.35	-0.5
4,081,699	-		DDA3937_RS17895	0.35	+0.1
4,081,699	-		DDA3937_RS17895	0.35	-0.1
4,081,699	-		DDA3937_RS17895	0.35	-1.4
4,081,699	-		DDA3937_RS17895	0.35	-0.4
4,081,715	-		DDA3937_RS17895	0.35	-1.2
4,081,715	-		DDA3937_RS17895	0.35	-1.2
4,081,715	-		DDA3937_RS17895	0.35	-0.4