Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17850

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS17845 and DDA3937_RS17850 are separated by 68 nucleotidesDDA3937_RS17850 and DDA3937_RS17855 are separated by 37 nucleotides DDA3937_RS17845: DDA3937_RS17845 - iron-containing alcohol dehydrogenase, at 4,068,564 to 4,069,700 _RS17845 DDA3937_RS17850: DDA3937_RS17850 - dihydrodipicolinate synthase family protein, at 4,069,769 to 4,070,653 _RS17850 DDA3937_RS17855: DDA3937_RS17855 - sodium:solute symporter family protein, at 4,070,691 to 4,072,112 _RS17855 Position (kb) 4069 4070 4071Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4069.059 kb on + strand, within DDA3937_RS17845at 4069.059 kb on + strand, within DDA3937_RS17845at 4069.060 kb on - strand, within DDA3937_RS17845at 4069.188 kb on + strand, within DDA3937_RS17845at 4069.188 kb on + strand, within DDA3937_RS17845at 4069.188 kb on + strand, within DDA3937_RS17845at 4069.188 kb on + strand, within DDA3937_RS17845at 4069.188 kb on + strand, within DDA3937_RS17845at 4069.188 kb on + strand, within DDA3937_RS17845at 4069.188 kb on + strand, within DDA3937_RS17845at 4069.189 kb on - strand, within DDA3937_RS17845at 4069.189 kb on - strand, within DDA3937_RS17845at 4069.189 kb on - strand, within DDA3937_RS17845at 4069.189 kb on - strand, within DDA3937_RS17845at 4069.189 kb on - strand, within DDA3937_RS17845at 4069.189 kb on - strand, within DDA3937_RS17845at 4069.271 kb on + strand, within DDA3937_RS17845at 4069.271 kb on + strand, within DDA3937_RS17845at 4069.271 kb on + strand, within DDA3937_RS17845at 4069.272 kb on - strand, within DDA3937_RS17845at 4069.272 kb on - strand, within DDA3937_RS17845at 4069.287 kb on + strand, within DDA3937_RS17845at 4069.287 kb on + strand, within DDA3937_RS17845at 4069.287 kb on + strand, within DDA3937_RS17845at 4069.287 kb on + strand, within DDA3937_RS17845at 4069.288 kb on - strand, within DDA3937_RS17845at 4069.288 kb on - strand, within DDA3937_RS17845at 4069.288 kb on - strand, within DDA3937_RS17845at 4069.290 kb on + strand, within DDA3937_RS17845at 4069.290 kb on + strand, within DDA3937_RS17845at 4069.291 kb on - strand, within DDA3937_RS17845at 4069.362 kb on + strand, within DDA3937_RS17845at 4069.362 kb on + strand, within DDA3937_RS17845at 4069.362 kb on + strand, within DDA3937_RS17845at 4069.362 kb on + strand, within DDA3937_RS17845at 4069.363 kb on - strand, within DDA3937_RS17845at 4069.363 kb on - strand, within DDA3937_RS17845at 4069.521 kb on + strand, within DDA3937_RS17845at 4069.521 kb on + strandat 4069.522 kb on - strand, within DDA3937_RS17845at 4069.600 kb on - strandat 4069.683 kb on + strandat 4069.683 kb on + strandat 4069.684 kb on - strandat 4069.698 kb on + strandat 4069.725 kb on - strandat 4069.752 kb on - strandat 4069.774 kb on + strandat 4069.774 kb on + strandat 4069.775 kb on - strandat 4069.775 kb on - strandat 4069.897 kb on + strand, within DDA3937_RS17850at 4069.924 kb on - strand, within DDA3937_RS17850at 4070.090 kb on + strand, within DDA3937_RS17850at 4070.090 kb on + strand, within DDA3937_RS17850at 4070.091 kb on - strand, within DDA3937_RS17850at 4070.091 kb on - strand, within DDA3937_RS17850at 4070.171 kb on + strand, within DDA3937_RS17850at 4070.171 kb on + strand, within DDA3937_RS17850at 4070.172 kb on - strand, within DDA3937_RS17850at 4070.274 kb on - strand, within DDA3937_RS17850at 4070.274 kb on - strand, within DDA3937_RS17850at 4070.387 kb on - strand, within DDA3937_RS17850at 4070.387 kb on - strand, within DDA3937_RS17850at 4070.501 kb on - strand, within DDA3937_RS17850at 4070.510 kb on + strand, within DDA3937_RS17850at 4070.510 kb on + strand, within DDA3937_RS17850at 4070.664 kb on - strandat 4070.669 kb on + strandat 4070.669 kb on + strandat 4070.669 kb on + strandat 4070.675 kb on + strandat 4070.676 kb on - strandat 4070.676 kb on - strandat 4070.720 kb on + strandat 4070.720 kb on + strandat 4070.720 kb on + strandat 4070.721 kb on - strandat 4070.721 kb on - strandat 4070.721 kb on - strandat 4070.721 kb on - strandat 4070.721 kb on - strandat 4070.721 kb on - strandat 4070.721 kb on - strandat 4070.721 kb on - strandat 4070.734 kb on + strandat 4070.734 kb on + strandat 4070.735 kb on - strandat 4070.745 kb on + strandat 4070.746 kb on - strandat 4070.756 kb on + strandat 4070.756 kb on + strandat 4070.756 kb on + strandat 4070.756 kb on + strandat 4070.756 kb on + strandat 4070.756 kb on + strandat 4070.756 kb on + strandat 4070.756 kb on + strandat 4070.757 kb on - strandat 4070.787 kb on - strandat 4070.865 kb on - strand, within DDA3937_RS17855at 4070.991 kb on + strand, within DDA3937_RS17855at 4070.991 kb on + strand, within DDA3937_RS17855at 4070.991 kb on + strand, within DDA3937_RS17855at 4071.012 kb on - strandat 4071.012 kb on - strand, within DDA3937_RS17855at 4071.045 kb on - strand, within DDA3937_RS17855at 4071.078 kb on + strand, within DDA3937_RS17855at 4071.079 kb on - strand, within DDA3937_RS17855at 4071.100 kb on + strand, within DDA3937_RS17855at 4071.100 kb on + strand, within DDA3937_RS17855at 4071.100 kb on + strand, within DDA3937_RS17855at 4071.100 kb on + strand, within DDA3937_RS17855at 4071.100 kb on + strand, within DDA3937_RS17855at 4071.100 kb on + strand, within DDA3937_RS17855at 4071.100 kb on + strand, within DDA3937_RS17855at 4071.101 kb on - strand, within DDA3937_RS17855at 4071.101 kb on - strand, within DDA3937_RS17855at 4071.101 kb on - strand, within DDA3937_RS17855at 4071.101 kb on - strand, within DDA3937_RS17855at 4071.101 kb on - strand, within DDA3937_RS17855at 4071.101 kb on - strand, within DDA3937_RS17855at 4071.104 kb on + strand, within DDA3937_RS17855at 4071.104 kb on + strand, within DDA3937_RS17855at 4071.104 kb on + strand, within DDA3937_RS17855at 4071.104 kb on + strand, within DDA3937_RS17855at 4071.104 kb on + strand, within DDA3937_RS17855at 4071.105 kb on - strand, within DDA3937_RS17855at 4071.105 kb on - strand, within DDA3937_RS17855at 4071.105 kb on - strand, within DDA3937_RS17855at 4071.105 kb on - strand, within DDA3937_RS17855at 4071.108 kb on + strand, within DDA3937_RS17855at 4071.108 kb on + strand, within DDA3937_RS17855at 4071.108 kb on + strand, within DDA3937_RS17855at 4071.108 kb on + strand, within DDA3937_RS17855at 4071.108 kb on + strand, within DDA3937_RS17855at 4071.109 kb on - strand, within DDA3937_RS17855at 4071.109 kb on - strand, within DDA3937_RS17855at 4071.109 kb on - strand, within DDA3937_RS17855at 4071.109 kb on - strand, within DDA3937_RS17855at 4071.109 kb on - strand, within DDA3937_RS17855at 4071.109 kb on - strand, within DDA3937_RS17855at 4071.109 kb on - strand, within DDA3937_RS17855at 4071.140 kb on - strand, within DDA3937_RS17855at 4071.188 kb on + strand, within DDA3937_RS17855at 4071.189 kb on - strand, within DDA3937_RS17855at 4071.189 kb on - strand, within DDA3937_RS17855at 4071.195 kb on + strand, within DDA3937_RS17855at 4071.195 kb on + strand, within DDA3937_RS17855at 4071.195 kb on + strand, within DDA3937_RS17855at 4071.196 kb on - strand, within DDA3937_RS17855at 4071.196 kb on - strand, within DDA3937_RS17855at 4071.202 kb on - strand, within DDA3937_RS17855at 4071.202 kb on - strand, within DDA3937_RS17855at 4071.202 kb on - strand, within DDA3937_RS17855at 4071.228 kb on + strand, within DDA3937_RS17855at 4071.258 kb on + strand, within DDA3937_RS17855at 4071.258 kb on + strand, within DDA3937_RS17855at 4071.282 kb on + strand, within DDA3937_RS17855at 4071.282 kb on + strand, within DDA3937_RS17855at 4071.283 kb on - strand, within DDA3937_RS17855at 4071.283 kb on - strand, within DDA3937_RS17855at 4071.283 kb on - strand, within DDA3937_RS17855at 4071.283 kb on - strand, within DDA3937_RS17855at 4071.342 kb on + strand, within DDA3937_RS17855at 4071.503 kb on + strand, within DDA3937_RS17855at 4071.503 kb on + strand, within DDA3937_RS17855at 4071.504 kb on - strand, within DDA3937_RS17855at 4071.504 kb on - strand, within DDA3937_RS17855at 4071.577 kb on - strand, within DDA3937_RS17855

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,069,059 + DDA3937_RS17845 0.44 -0.4
4,069,059 + DDA3937_RS17845 0.44 -0.7
4,069,060 - DDA3937_RS17845 0.44 +0.6
4,069,188 + DDA3937_RS17845 0.55 +1.0
4,069,188 + DDA3937_RS17845 0.55 +2.3
4,069,188 + DDA3937_RS17845 0.55 +1.2
4,069,188 + DDA3937_RS17845 0.55 +1.6
4,069,188 + DDA3937_RS17845 0.55 +0.2
4,069,188 + DDA3937_RS17845 0.55 -2.1
4,069,188 + DDA3937_RS17845 0.55 -0.8
4,069,189 - DDA3937_RS17845 0.55 +0.9
4,069,189 - DDA3937_RS17845 0.55 +0.5
4,069,189 - DDA3937_RS17845 0.55 -1.7
4,069,189 - DDA3937_RS17845 0.55 +1.2
4,069,189 - DDA3937_RS17845 0.55 -2.4
4,069,189 - DDA3937_RS17845 0.55 +0.6
4,069,271 + DDA3937_RS17845 0.62 -3.4
4,069,271 + DDA3937_RS17845 0.62 -1.6
4,069,271 + DDA3937_RS17845 0.62 +0.6
4,069,272 - DDA3937_RS17845 0.62 -1.7
4,069,272 - DDA3937_RS17845 0.62 -0.7
4,069,287 + DDA3937_RS17845 0.64 +2.0
4,069,287 + DDA3937_RS17845 0.64 -1.8
4,069,287 + DDA3937_RS17845 0.64 +1.8
4,069,287 + DDA3937_RS17845 0.64 -2.7
4,069,288 - DDA3937_RS17845 0.64 -0.9
4,069,288 - DDA3937_RS17845 0.64 +0.5
4,069,288 - DDA3937_RS17845 0.64 +1.6
4,069,290 + DDA3937_RS17845 0.64 -2.3
4,069,290 + DDA3937_RS17845 0.64 -1.3
4,069,291 - DDA3937_RS17845 0.64 +0.4
4,069,362 + DDA3937_RS17845 0.70 -1.5
4,069,362 + DDA3937_RS17845 0.70 +1.2
4,069,362 + DDA3937_RS17845 0.70 +1.6
4,069,362 + DDA3937_RS17845 0.70 +0.9
4,069,363 - DDA3937_RS17845 0.70 +0.4
4,069,363 - DDA3937_RS17845 0.70 -0.6
4,069,521 + DDA3937_RS17845 0.84 +2.5
4,069,521 + -0.4
4,069,522 - DDA3937_RS17845 0.84 +0.3
4,069,600 - -1.4
4,069,683 + +0.6
4,069,683 + -2.1
4,069,684 - -2.1
4,069,698 + -1.7
4,069,725 - -1.2
4,069,752 - -0.9
4,069,774 + -0.7
4,069,774 + +0.9
4,069,775 - -0.1
4,069,775 - +0.8
4,069,897 + DDA3937_RS17850 0.14 +0.4
4,069,924 - DDA3937_RS17850 0.18 +0.6
4,070,090 + DDA3937_RS17850 0.36 -3.3
4,070,090 + DDA3937_RS17850 0.36 -0.9
4,070,091 - DDA3937_RS17850 0.36 -0.7
4,070,091 - DDA3937_RS17850 0.36 -0.8
4,070,171 + DDA3937_RS17850 0.45 -3.3
4,070,171 + DDA3937_RS17850 0.45 -0.7
4,070,172 - DDA3937_RS17850 0.46 -0.1
4,070,274 - DDA3937_RS17850 0.57 -0.4
4,070,274 - DDA3937_RS17850 0.57 +2.1
4,070,387 - DDA3937_RS17850 0.70 +0.3
4,070,387 - DDA3937_RS17850 0.70 -1.4
4,070,501 - DDA3937_RS17850 0.83 -1.6
4,070,510 + DDA3937_RS17850 0.84 -1.9
4,070,510 + DDA3937_RS17850 0.84 -0.4
4,070,664 - +0.8
4,070,669 + -1.9
4,070,669 + +1.3
4,070,669 + -1.2
4,070,675 + -0.4
4,070,676 - -0.9
4,070,676 - -0.3
4,070,720 + +1.0
4,070,720 + -0.9
4,070,720 + +0.4
4,070,721 - +0.3
4,070,721 - -1.7
4,070,721 - +0.1
4,070,721 - +1.0
4,070,721 - -1.2
4,070,721 - +2.0
4,070,721 - +0.1
4,070,721 - -2.4
4,070,734 + +1.2
4,070,734 + +1.6
4,070,735 - +0.2
4,070,745 + -3.4
4,070,746 - +0.7
4,070,756 + -0.6
4,070,756 + -1.7
4,070,756 + -0.7
4,070,756 + -0.4
4,070,756 + +0.9
4,070,756 + +1.2
4,070,756 + +1.0
4,070,756 + -0.6
4,070,757 - -1.5
4,070,787 - -3.1
4,070,865 - DDA3937_RS17855 0.12 -1.5
4,070,991 + DDA3937_RS17855 0.21 +0.1
4,070,991 + DDA3937_RS17855 0.21 -0.4
4,070,991 + DDA3937_RS17855 0.21 +0.9
4,071,012 - +2.6
4,071,012 - DDA3937_RS17855 0.23 -0.9
4,071,045 - DDA3937_RS17855 0.25 -2.2
4,071,078 + DDA3937_RS17855 0.27 -0.2
4,071,079 - DDA3937_RS17855 0.27 -1.4
4,071,100 + DDA3937_RS17855 0.29 +2.2
4,071,100 + DDA3937_RS17855 0.29 -1.8
4,071,100 + DDA3937_RS17855 0.29 +0.6
4,071,100 + DDA3937_RS17855 0.29 +0.5
4,071,100 + DDA3937_RS17855 0.29 -1.2
4,071,100 + DDA3937_RS17855 0.29 -0.9
4,071,100 + DDA3937_RS17855 0.29 +0.4
4,071,101 - DDA3937_RS17855 0.29 +0.3
4,071,101 - DDA3937_RS17855 0.29 -2.6
4,071,101 - DDA3937_RS17855 0.29 -0.6
4,071,101 - DDA3937_RS17855 0.29 -2.3
4,071,101 - DDA3937_RS17855 0.29 -1.9
4,071,101 - DDA3937_RS17855 0.29 +0.1
4,071,104 + DDA3937_RS17855 0.29 -2.3
4,071,104 + DDA3937_RS17855 0.29 +0.5
4,071,104 + DDA3937_RS17855 0.29 +1.5
4,071,104 + DDA3937_RS17855 0.29 -1.4
4,071,104 + DDA3937_RS17855 0.29 -1.1
4,071,105 - DDA3937_RS17855 0.29 -2.4
4,071,105 - DDA3937_RS17855 0.29 -0.1
4,071,105 - DDA3937_RS17855 0.29 +2.1
4,071,105 - DDA3937_RS17855 0.29 -0.7
4,071,108 + DDA3937_RS17855 0.29 -0.4
4,071,108 + DDA3937_RS17855 0.29 +0.4
4,071,108 + DDA3937_RS17855 0.29 +1.6
4,071,108 + DDA3937_RS17855 0.29 -0.9
4,071,108 + DDA3937_RS17855 0.29 -2.3
4,071,109 - DDA3937_RS17855 0.29 -3.1
4,071,109 - DDA3937_RS17855 0.29 +1.4
4,071,109 - DDA3937_RS17855 0.29 +0.1
4,071,109 - DDA3937_RS17855 0.29 +0.0
4,071,109 - DDA3937_RS17855 0.29 -0.4
4,071,109 - DDA3937_RS17855 0.29 -0.8
4,071,109 - DDA3937_RS17855 0.29 -2.3
4,071,140 - DDA3937_RS17855 0.32 -4.0
4,071,188 + DDA3937_RS17855 0.35 +1.6
4,071,189 - DDA3937_RS17855 0.35 -1.4
4,071,189 - DDA3937_RS17855 0.35 -1.4
4,071,195 + DDA3937_RS17855 0.35 +0.8
4,071,195 + DDA3937_RS17855 0.35 +2.2
4,071,195 + DDA3937_RS17855 0.35 +0.3
4,071,196 - DDA3937_RS17855 0.36 -0.1
4,071,196 - DDA3937_RS17855 0.36 +1.5
4,071,202 - DDA3937_RS17855 0.36 -1.4
4,071,202 - DDA3937_RS17855 0.36 -1.4
4,071,202 - DDA3937_RS17855 0.36 -0.3
4,071,228 + DDA3937_RS17855 0.38 -2.2
4,071,258 + DDA3937_RS17855 0.40 -0.4
4,071,258 + DDA3937_RS17855 0.40 +1.2
4,071,282 + DDA3937_RS17855 0.42 -2.9
4,071,282 + DDA3937_RS17855 0.42 -1.7
4,071,283 - DDA3937_RS17855 0.42 +0.4
4,071,283 - DDA3937_RS17855 0.42 +0.8
4,071,283 - DDA3937_RS17855 0.42 -0.7
4,071,283 - DDA3937_RS17855 0.42 -0.5
4,071,342 + DDA3937_RS17855 0.46 -0.9
4,071,503 + DDA3937_RS17855 0.57 -3.1
4,071,503 + DDA3937_RS17855 0.57 -0.5
4,071,504 - DDA3937_RS17855 0.57 -1.7
4,071,504 - DDA3937_RS17855 0.57 -1.9
4,071,577 - DDA3937_RS17855 0.62 -0.4

Or see this region's nucleotide sequence