Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17495

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,977,217	+				+1.2
3,977,288	+				+2.2
3,977,288	+				-1.1
3,977,383	-				+0.4
3,977,419	+				+0.8
3,977,420	-				+0.0
3,977,424	+				+1.0
3,977,424	+				-2.9
3,977,488	+				+1.1
3,977,501	-				+3.2
3,977,538	+		DDA3937_RS17485	0.25	-1.7
3,977,538	+		DDA3937_RS17485	0.25	-1.9
3,977,539	-		DDA3937_RS17485	0.26	+1.5
3,977,539	-		DDA3937_RS17485	0.26	-1.7
3,977,570	-		DDA3937_RS17485	0.37	-2.0
3,977,620	-		DDA3937_RS17485	0.55	+0.9
3,977,710	+		DDA3937_RS17485	0.88	-0.4
3,977,711	-		DDA3937_RS17485	0.88	-1.6
3,977,741	+				-1.4
3,977,741	+				-1.0
3,977,741	+				-3.0
3,977,742	-				-2.0
3,977,742	-				-2.2
3,977,742	-				-1.6
3,977,848	+				-3.8
3,977,848	+				-1.1
3,977,849	-				+2.2
3,977,849	-				-2.4
3,977,928	+				-0.6
3,977,928	+				+1.4
3,977,929	-				-2.7
3,977,929	-				-0.2
3,977,929	-				+1.6
3,977,932	-				+0.8
3,977,970	+				+0.5
3,977,971	-				+1.3
3,977,971	-				-1.0
3,977,975	+				+0.3
3,977,975	+				-1.5
3,977,975	+				-1.5
3,977,975	+				-0.3
3,977,975	+				-2.8
3,977,975	+				-0.1
3,977,976	-				-2.6
3,977,976	-				+1.3
3,977,976	-				+0.9
3,977,976	-				+1.6
3,977,979	+				-0.3
3,977,979	+				-2.5
3,977,979	+				+1.2
3,977,979	+				+0.3
3,977,979	+				+0.6
3,977,979	+				-1.2
3,977,979	+				-2.0
3,977,979	+				+0.8
3,977,979	+				-3.5
3,977,979	+				-0.3
3,977,979	+				+0.0
3,977,979	+				+0.9
3,977,979	+				-1.4
3,977,980	-				+1.9
3,977,980	-				-0.3
3,977,980	-				-3.4
3,977,980	-				-1.7
3,977,980	-				-2.6
3,977,980	-				-1.9
3,977,980	-				+1.0
3,977,980	-				-1.6
3,977,980	-				+1.0
3,977,980	-				-0.2
3,977,980	-				+0.6
3,977,980	-				-0.4
3,977,995	-				-2.4
3,977,995	-				-0.7
3,977,995	-				-1.6
3,978,000	-				-0.5
3,978,025	-				-2.6
3,978,025	-				-0.4
3,978,027	+				-1.4
3,978,049	-				-1.0
3,978,051	+				+1.0
3,978,051	+				-2.0
3,978,052	-				+0.4
3,978,052	-				-1.6
3,978,127	+				-0.3
3,978,128	-				+1.6
3,978,128	-				-0.1
3,978,128	-				+2.5
3,978,128	-				+0.2
3,978,145	+				-1.7
3,978,145	+				+0.3
3,978,145	+				-1.6
3,978,145	+				-2.0
3,978,145	+				+0.7
3,978,145	+				-3.5
3,978,146	-				+1.5
3,978,146	-				-2.9
3,978,146	-				-1.2
3,978,146	-				-0.6
3,978,146	-				+2.1
3,978,191	+				+1.2
3,978,192	-				-1.4
3,978,192	-				+0.5
3,978,195	+				+0.0
3,978,195	+				-3.3
3,978,195	+				-0.3
3,978,195	+				-0.5
3,978,441	+		DDA3937_RS17495	0.20	-1.9
3,978,441	+		DDA3937_RS17495	0.20	+2.0
3,978,441	+		DDA3937_RS17495	0.20	+2.4
3,978,441	+		DDA3937_RS17495	0.20	+0.5
3,978,442	-		DDA3937_RS17495	0.21	-0.4
3,978,541	+		DDA3937_RS17495	0.28	+0.9
3,978,542	-		DDA3937_RS17495	0.28	+0.8
3,978,563	+		DDA3937_RS17495	0.29	-0.7
3,978,580	+		DDA3937_RS17495	0.30	-0.7
3,978,580	+		DDA3937_RS17495	0.30	+0.2
3,978,580	+		DDA3937_RS17495	0.30	-1.5
3,978,580	+		DDA3937_RS17495	0.30	+0.1
3,978,580	+		DDA3937_RS17495	0.30	+0.1
3,978,581	-		DDA3937_RS17495	0.30	-0.1
3,978,581	-		DDA3937_RS17495	0.30	-0.4
3,978,581	-		DDA3937_RS17495	0.30	-1.9
3,978,581	-		DDA3937_RS17495	0.30	-1.0
3,978,581	-		DDA3937_RS17495	0.30	-1.1
3,978,581	-		DDA3937_RS17495	0.30	+0.6
3,978,581	-		DDA3937_RS17495	0.30	-0.2
3,978,581	-		DDA3937_RS17495	0.30	+0.6
3,978,656	+		DDA3937_RS17495	0.36	-1.7
3,978,657	-		DDA3937_RS17495	0.36	-0.7
3,978,657	-		DDA3937_RS17495	0.36	-2.1
3,978,737	+		DDA3937_RS17495	0.42	+0.2
3,978,737	+		DDA3937_RS17495	0.42	-2.8
3,978,737	+		DDA3937_RS17495	0.42	+0.8
3,978,737	+		DDA3937_RS17495	0.42	-1.1
3,978,737	+		DDA3937_RS17495	0.42	-1.6
3,978,737	+		DDA3937_RS17495	0.42	-0.3
3,978,738	-		DDA3937_RS17495	0.42	+0.9
3,978,738	-		DDA3937_RS17495	0.42	-1.4
3,978,738	-		DDA3937_RS17495	0.42	-0.7
3,978,738	-		DDA3937_RS17495	0.42	-1.0
3,978,738	-		DDA3937_RS17495	0.42	-1.6
3,978,738	-		DDA3937_RS17495	0.42	+1.3
3,978,738	-		DDA3937_RS17495	0.42	-1.4
3,978,738	-		DDA3937_RS17495	0.42	+0.5
3,978,761	+		DDA3937_RS17495	0.43	-1.9
3,978,761	+		DDA3937_RS17495	0.43	-0.4
3,978,762	-		DDA3937_RS17495	0.43	+1.6
3,978,836	+		DDA3937_RS17495	0.49	+0.5
3,978,837	-		DDA3937_RS17495	0.49	-2.0
3,978,837	-		DDA3937_RS17495	0.49	+1.7
3,978,856	-		DDA3937_RS17495	0.50	-0.1
3,978,856	-		DDA3937_RS17495	0.50	-2.6
3,978,905	+		DDA3937_RS17495	0.53	-2.3
3,978,967	+		DDA3937_RS17495	0.58	-2.6
3,978,967	+		DDA3937_RS17495	0.58	-0.9
3,978,968	-		DDA3937_RS17495	0.58	+1.8
3,978,968	-		DDA3937_RS17495	0.58	+0.9
3,979,065	-		DDA3937_RS17495	0.65	+2.1
3,979,087	-		DDA3937_RS17495	0.66	-1.4
3,979,087	-		DDA3937_RS17495	0.66	+1.1
3,979,100	+		DDA3937_RS17495	0.67	-2.5
3,979,100	+		DDA3937_RS17495	0.67	-0.7
3,979,100	+		DDA3937_RS17495	0.67	+2.9
3,979,100	+		DDA3937_RS17495	0.67	-1.3
3,979,100	+		DDA3937_RS17495	0.67	+0.9
3,979,100	+		DDA3937_RS17495	0.67	-0.6
3,979,101	-				-0.7
3,979,101	-		DDA3937_RS17495	0.67	+0.3
3,979,101	-		DDA3937_RS17495	0.67	-1.7
3,979,101	-		DDA3937_RS17495	0.67	+1.6
3,979,101	-		DDA3937_RS17495	0.67	+1.8
3,979,109	+		DDA3937_RS17495	0.68	-3.3
3,979,110	-				-0.4
3,979,112	-		DDA3937_RS17495	0.68	+0.1
3,979,112	-		DDA3937_RS17495	0.68	+2.2
3,979,112	-		DDA3937_RS17495	0.68	-2.8
3,979,216	+		DDA3937_RS17495	0.76	-0.1
3,979,216	+		DDA3937_RS17495	0.76	+0.4
3,979,216	+		DDA3937_RS17495	0.76	+0.8
3,979,217	-		DDA3937_RS17495	0.76	-0.5
3,979,370	+		DDA3937_RS17495	0.86	-2.9
3,979,370	+		DDA3937_RS17495	0.86	-2.6
3,979,370	+		DDA3937_RS17495	0.86	+1.9
3,979,371	-		DDA3937_RS17495	0.87	+0.5
3,979,371	-		DDA3937_RS17495	0.87	-1.2
3,979,473	+				-1.9
3,979,473	+				-0.7
3,979,473	+				-0.3
3,979,474	-				-2.4
3,979,474	-				+0.1
3,979,474	-				+2.0
3,979,474	-				+0.6
3,979,474	-				-0.0
3,979,474	-				+1.0
3,979,474	-				-1.3
3,979,494	+				+0.7
3,979,494	+				-0.7
3,979,498	+				-1.8
3,979,498	+				-1.4
3,979,587	+				+1.5
3,979,587	+				+1.1
3,979,587	+				-1.0
3,979,588	-				-0.7
3,979,588	-				+0.0
3,979,588	-				-1.3
3,979,588	-				-0.3
3,979,588	-				+0.3
3,979,588	-				+1.1
3,979,631	+				-3.5
3,979,631	+				-3.0
3,979,631	+				+0.1
3,979,662	+				-1.4
3,979,684	-				-0.8
3,979,709	+				-1.8
3,979,709	+				+2.1
3,979,710	-				-0.6
3,979,717	+				+0.4
3,979,717	+				+0.3
3,979,717	+				-2.0
3,979,717	+				-1.6
3,979,717	+				+1.1
3,979,717	+				-1.9
3,979,718	-				-1.0
3,979,718	-				-3.6
3,979,720	-				-0.4
3,979,734	+				+2.6
3,979,735	-				+2.3
3,979,735	-				-3.3
3,979,735	-				-0.5
3,979,735	-				-1.2
3,979,735	-				-1.6
3,979,735	-				-0.2
3,979,789	+				-2.1
3,979,792	-				-2.6
3,979,815	+				+0.6
3,979,822	+				-1.2
3,979,823	-				+1.2
3,979,823	-				+0.3
3,979,825	+				-1.4
3,979,825	+				+0.5
3,979,825	+				+1.0
3,979,826	-				-0.2
3,979,826	-				-0.2
3,979,826	-				-0.9
3,979,826	-				-2.8
3,979,826	-				-0.7
3,979,912	+				+1.4
3,979,912	+				-0.6
3,979,916	+				-1.6
3,979,916	+				-0.5
3,979,917	-				-1.4
3,979,917	-				+1.0
3,979,950	+				-0.6
3,979,951	-				-1.4
3,979,951	-				-2.6
3,980,095	-		DDA3937_RS17500	0.18	-2.3
3,980,095	-		DDA3937_RS17500	0.18	+0.2
3,980,095	-		DDA3937_RS17500	0.18	-1.8
3,980,100	-		DDA3937_RS17500	0.19	-1.2
3,980,100	-		DDA3937_RS17500	0.19	+0.0
3,980,100	-		DDA3937_RS17500	0.19	+1.3
3,980,126	+		DDA3937_RS17500	0.21	+0.0
3,980,126	+		DDA3937_RS17500	0.21	-1.7
3,980,126	+		DDA3937_RS17500	0.21	-2.6
3,980,127	-		DDA3937_RS17500	0.21	+1.3
3,980,127	-		DDA3937_RS17500	0.21	+2.1
3,980,127	-		DDA3937_RS17500	0.21	-0.1
3,980,127	-		DDA3937_RS17500	0.21	-1.6
3,980,127	-		DDA3937_RS17500	0.21	-1.3
3,980,127	-		DDA3937_RS17500	0.21	-1.4
3,980,127	-		DDA3937_RS17500	0.21	-1.6
3,980,245	-		DDA3937_RS17500	0.33	+1.8
3,980,264	+		DDA3937_RS17500	0.35	-0.5
3,980,264	+		DDA3937_RS17500	0.35	-1.1
3,980,264	+		DDA3937_RS17500	0.35	+0.3
3,980,264	+		DDA3937_RS17500	0.35	-0.5
3,980,264	+		DDA3937_RS17500	0.35	-0.7
3,980,264	+		DDA3937_RS17500	0.35	-1.1
3,980,265	-		DDA3937_RS17500	0.35	+2.0
3,980,265	-		DDA3937_RS17500	0.35	+0.2
3,980,265	-		DDA3937_RS17500	0.35	+1.1
3,980,330	+		DDA3937_RS17500	0.42	+0.9
3,980,330	+		DDA3937_RS17500	0.42	+0.6
3,980,330	+		DDA3937_RS17500	0.42	+0.3
3,980,330	+		DDA3937_RS17500	0.42	-0.6
3,980,330	+		DDA3937_RS17500	0.42	+3.0
3,980,331	-		DDA3937_RS17500	0.42	+0.6
3,980,331	-		DDA3937_RS17500	0.42	+1.3
3,980,331	-		DDA3937_RS17500	0.42	-1.2
3,980,335	-		DDA3937_RS17500	0.42	+0.3
3,980,498	+		DDA3937_RS17500	0.59	+1.6
3,980,498	+		DDA3937_RS17500	0.59	+0.9
3,980,498	+		DDA3937_RS17500	0.59	-0.3
3,980,499	-		DDA3937_RS17500	0.59	+0.9
3,980,499	-		DDA3937_RS17500	0.59	-0.4
3,980,499	-		DDA3937_RS17500	0.59	+1.5
3,980,499	-		DDA3937_RS17500	0.59	-1.7
3,980,516	+		DDA3937_RS17500	0.61	-0.7
3,980,516	+		DDA3937_RS17500	0.61	-2.6
3,980,516	+		DDA3937_RS17500	0.61	-2.5
3,980,517	-		DDA3937_RS17500	0.61	-1.6
3,980,517	-		DDA3937_RS17500	0.61	+0.2
3,980,519	+		DDA3937_RS17500	0.61	-1.3
3,980,519	+		DDA3937_RS17500	0.61	+1.6
3,980,519	+		DDA3937_RS17500	0.61	+0.3
3,980,519	+		DDA3937_RS17500	0.61	+0.3
3,980,520	-		DDA3937_RS17500	0.61	-2.7
3,980,520	-		DDA3937_RS17500	0.61	+0.9
3,980,520	-		DDA3937_RS17500	0.61	-3.1
3,980,520	-		DDA3937_RS17500	0.61	+1.2
3,980,520	-		DDA3937_RS17500	0.61	-0.4
3,980,520	-		DDA3937_RS17500	0.61	-0.4
3,980,520	-		DDA3937_RS17500	0.61	-0.4
3,980,520	-		DDA3937_RS17500	0.61	-0.0