Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17270

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,931,345	+				-2.4
3,931,345	+				-0.3
3,931,346	-				-0.1
3,931,346	-				-0.2
3,931,454	+				-0.3
3,931,454	+				-0.1
3,931,455	-				+1.1
3,931,455	-				-2.4
3,931,455	-				-2.5
3,931,455	-				-0.3
3,931,455	-				-1.2
3,931,455	-				-1.6
3,931,455	-				-0.4
3,931,468	+				+0.8
3,931,468	+				-0.4
3,931,473	+				+2.6
3,931,473	+				-0.3
3,931,473	+				+0.6
3,931,475	+				-1.4
3,931,475	+				+1.0
3,931,514	+		DDA3937_RS17265	0.14	+0.4
3,931,515	-		DDA3937_RS17265	0.15	-3.2
3,931,587	+		DDA3937_RS17265	0.31	-0.2
3,931,714	-		DDA3937_RS17265	0.61	+0.0
3,931,755	+		DDA3937_RS17265	0.71	-0.2
3,931,756	-		DDA3937_RS17265	0.71	-0.4
3,931,776	-		DDA3937_RS17265	0.76	+1.8
3,931,786	+		DDA3937_RS17265	0.78	-1.9
3,931,787	-		DDA3937_RS17265	0.78	+2.1
3,931,832	+		DDA3937_RS17265	0.89	+1.1
3,931,833	-		DDA3937_RS17265	0.89	-0.6
3,931,833	-		DDA3937_RS17265	0.89	+1.3
3,931,833	-		DDA3937_RS17265	0.89	+0.7
3,931,853	+				-0.4
3,931,892	+				+4.2
3,931,910	+				-1.9
3,931,911	-				+1.6
3,932,004	-				-2.9
3,932,004	-				-1.7
3,932,036	-				+1.3
3,932,036	-				-1.1
3,932,100	-				+0.4
3,932,117	+				-1.6
3,932,118	-				-2.5
3,932,137	+				+1.3
3,932,155	-				+2.6
3,932,160	+				-1.2
3,932,160	+				+2.0
3,932,160	+				-2.4
3,932,160	+				-2.0
3,932,161	-				-2.5
3,932,170	+				-1.0
3,932,171	-				+0.2
3,932,176	-				+1.4
3,932,226	+				+0.6
3,932,227	-				+0.3
3,932,276	+				-3.4
3,932,276	+				-1.0
3,932,300	+				+0.3
3,932,300	+				-1.7
3,932,301	-				-1.9
3,932,301	-				-1.2
3,932,307	-				-1.0
3,932,307	-				+0.6
3,932,413	+		DDA3937_RS17270	0.11	-2.6
3,932,413	+		DDA3937_RS17270	0.11	-1.4
3,932,414	-		DDA3937_RS17270	0.11	-1.0
3,932,414	-		DDA3937_RS17270	0.11	-0.7
3,932,415	+		DDA3937_RS17270	0.11	-0.4
3,932,415	+		DDA3937_RS17270	0.11	+1.4
3,932,416	-		DDA3937_RS17270	0.11	-0.7
3,932,416	-		DDA3937_RS17270	0.11	-0.3
3,932,416	-		DDA3937_RS17270	0.11	-1.0
3,932,427	-		DDA3937_RS17270	0.12	+0.0
3,932,518	+		DDA3937_RS17270	0.18	+0.3
3,932,518	+		DDA3937_RS17270	0.18	+0.6
3,932,518	+		DDA3937_RS17270	0.18	-0.1
3,932,519	-		DDA3937_RS17270	0.18	-2.3
3,932,519	-		DDA3937_RS17270	0.18	+0.2
3,932,519	-		DDA3937_RS17270	0.18	-0.9
3,932,519	-		DDA3937_RS17270	0.18	-1.6
3,932,542	-		DDA3937_RS17270	0.19	+1.5
3,932,607	-		DDA3937_RS17270	0.23	-2.2
3,932,673	+		DDA3937_RS17270	0.27	-1.0
3,932,673	+		DDA3937_RS17270	0.27	-2.2
3,932,683	+		DDA3937_RS17270	0.28	+0.5
3,932,683	+		DDA3937_RS17270	0.28	+0.0
3,932,686	+		DDA3937_RS17270	0.28	+0.9
3,932,686	+		DDA3937_RS17270	0.28	+0.5
3,932,686	+		DDA3937_RS17270	0.28	-0.1
3,932,686	+		DDA3937_RS17270	0.28	-0.4
3,932,687	-		DDA3937_RS17270	0.28	-1.5
3,932,687	-		DDA3937_RS17270	0.28	+2.6
3,932,687	-		DDA3937_RS17270	0.28	-0.7
3,932,687	-		DDA3937_RS17270	0.28	-2.2
3,932,687	-		DDA3937_RS17270	0.28	-3.7
3,932,687	-		DDA3937_RS17270	0.28	-2.0
3,932,733	+		DDA3937_RS17270	0.31	+0.6
3,932,734	-		DDA3937_RS17270	0.31	-0.7
3,932,734	-		DDA3937_RS17270	0.31	-1.4
3,932,784	+		DDA3937_RS17270	0.34	-1.4
3,932,784	+		DDA3937_RS17270	0.34	-1.5
3,932,784	+		DDA3937_RS17270	0.34	+0.0
3,932,784	+		DDA3937_RS17270	0.34	+1.5
3,932,784	+		DDA3937_RS17270	0.34	+0.5
3,932,784	+		DDA3937_RS17270	0.34	-1.0
3,932,784	+		DDA3937_RS17270	0.34	-0.4
3,932,800	-		DDA3937_RS17270	0.35	-1.0
3,933,277	+		DDA3937_RS17270	0.65	-1.2
3,933,277	+		DDA3937_RS17270	0.65	-2.8
3,933,277	+		DDA3937_RS17270	0.65	+0.4
3,933,277	+		DDA3937_RS17270	0.65	-1.7
3,933,278	-		DDA3937_RS17270	0.65	+0.9
3,933,278	-		DDA3937_RS17270	0.65	-0.3
3,933,278	-		DDA3937_RS17270	0.65	+1.6
3,933,278	-		DDA3937_RS17270	0.65	+0.3
3,933,278	-		DDA3937_RS17270	0.65	-2.3
3,933,278	-		DDA3937_RS17270	0.65	+1.1
3,933,622	+		DDA3937_RS17270	0.87	+0.7
3,933,622	+		DDA3937_RS17270	0.87	+0.1
3,933,622	+		DDA3937_RS17270	0.87	+0.7
3,933,622	+		DDA3937_RS17270	0.87	-0.9
3,933,622	+		DDA3937_RS17270	0.87	-1.6
3,933,622	+		DDA3937_RS17270	0.87	+1.4
3,933,622	+		DDA3937_RS17270	0.87	+0.3
3,933,622	+		DDA3937_RS17270	0.87	-0.5
3,933,623	-		DDA3937_RS17270	0.87	+0.1
3,933,680	+				-1.7
3,933,689	+				+2.0
3,933,690	-				-0.2
3,934,012	+				-1.4
3,934,012	+				+0.0
3,934,064	+				-1.6
3,934,092	+				+0.4
3,934,093	-				+0.6
3,934,093	-				+0.2
3,934,093	-				-0.7
3,934,134	+				+0.3
3,934,134	+				-1.0
3,934,135	-				-2.4
3,934,176	+				-1.4
3,934,176	+				-1.2
3,934,176	+				+1.2
3,934,176	+				-1.4
3,934,177	-				-1.2
3,934,177	-				-0.4
3,934,177	-				-2.0
3,934,177	-				-2.2
3,934,204	+				-1.0
3,934,204	+				-3.4
3,934,204	+				-1.1
3,934,204	+				-0.4
3,934,204	+				-0.7
3,934,204	+				+0.0
3,934,204	+				-2.3
3,934,204	+				+0.4
3,934,204	+				+1.6
3,934,205	-				-2.9
3,934,205	-				-0.7
3,934,205	-				-1.9
3,934,205	-				-1.0
3,934,218	+				-2.7
3,934,271	+				+1.1
3,934,271	+				+0.0
3,934,310	+				-0.1
3,934,311	-				-0.8
3,934,407	+		DDA3937_RS17275	0.15	-0.4
3,934,475	-		DDA3937_RS17275	0.22	+0.6
3,934,488	+		DDA3937_RS17275	0.24	+3.3
3,934,546	+		DDA3937_RS17275	0.30	+1.9
3,934,546	+		DDA3937_RS17275	0.30	+1.8
3,934,547	-		DDA3937_RS17275	0.30	+0.1
3,934,630	+		DDA3937_RS17275	0.39	+1.3
3,934,631	-		DDA3937_RS17275	0.39	+0.6