Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16855

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,831,720	-		DDA3937_RS16845	0.73	-1.1
3,831,850	+		DDA3937_RS16845	0.86	-0.6
3,831,850	+		DDA3937_RS16845	0.86	-1.6
3,831,850	+		DDA3937_RS16845	0.86	-2.3
3,831,850	+		DDA3937_RS16845	0.86	-0.7
3,831,850	+				-0.0
3,831,850	+		DDA3937_RS16845	0.86	-0.9
3,831,851	-		DDA3937_RS16845	0.86	-1.3
3,831,851	-		DDA3937_RS16845	0.86	-0.3
3,831,851	-		DDA3937_RS16845	0.86	-1.0
3,831,851	-		DDA3937_RS16845	0.86	+0.3
3,831,970	+				+0.2
3,831,986	+				+2.2
3,831,987	-				-0.4
3,832,070	+		DDA3937_RS16850	0.13	+0.7
3,832,099	+		DDA3937_RS16850	0.17	-0.5
3,832,099	+		DDA3937_RS16850	0.17	-0.8
3,832,099	+		DDA3937_RS16850	0.17	-1.7
3,832,099	+		DDA3937_RS16850	0.17	-2.2
3,832,099	+		DDA3937_RS16850	0.17	-1.4
3,832,099	+		DDA3937_RS16850	0.17	-1.2
3,832,100	-		DDA3937_RS16850	0.17	-1.3
3,832,100	-				+1.6
3,832,100	-		DDA3937_RS16850	0.17	-1.0
3,832,100	-				+1.6
3,832,101	+		DDA3937_RS16850	0.17	+0.6
3,832,101	+		DDA3937_RS16850	0.17	-1.7
3,832,101	+		DDA3937_RS16850	0.17	-1.0
3,832,101	+		DDA3937_RS16850	0.17	-2.0
3,832,101	+		DDA3937_RS16850	0.17	+0.6
3,832,101	+		DDA3937_RS16850	0.17	-1.2
3,832,101	+		DDA3937_RS16850	0.17	-2.4
3,832,101	+		DDA3937_RS16850	0.17	-3.4
3,832,101	+		DDA3937_RS16850	0.17	+1.2
3,832,101	+		DDA3937_RS16850	0.17	-2.0
3,832,101	+		DDA3937_RS16850	0.17	-0.4
3,832,101	+		DDA3937_RS16850	0.17	-1.8
3,832,101	+		DDA3937_RS16850	0.17	-1.6
3,832,101	+		DDA3937_RS16850	0.17	-0.0
3,832,101	+		DDA3937_RS16850	0.17	-1.9
3,832,101	+		DDA3937_RS16850	0.17	-0.8
3,832,101	+		DDA3937_RS16850	0.17	-0.0
3,832,101	+		DDA3937_RS16850	0.17	+0.3
3,832,102	-		DDA3937_RS16850	0.18	-0.3
3,832,102	-		DDA3937_RS16850	0.18	-0.0
3,832,102	-		DDA3937_RS16850	0.18	-2.1
3,832,102	-		DDA3937_RS16850	0.18	+0.1
3,832,102	-		DDA3937_RS16850	0.18	+1.2
3,832,102	-		DDA3937_RS16850	0.18	+0.5
3,832,102	-		DDA3937_RS16850	0.18	-0.0
3,832,102	-		DDA3937_RS16850	0.18	+1.1
3,832,102	-		DDA3937_RS16850	0.18	+1.2
3,832,102	-		DDA3937_RS16850	0.18	-1.6
3,832,102	-		DDA3937_RS16850	0.18	-2.1
3,832,102	-		DDA3937_RS16850	0.18	+2.6
3,832,102	-		DDA3937_RS16850	0.18	-0.3
3,832,102	-		DDA3937_RS16850	0.18	+0.7
3,832,102	-		DDA3937_RS16850	0.18	+1.1
3,832,103	+		DDA3937_RS16850	0.18	-1.1
3,832,103	+		DDA3937_RS16850	0.18	+0.5
3,832,103	+		DDA3937_RS16850	0.18	-0.8
3,832,103	+				-0.0
3,832,103	+		DDA3937_RS16850	0.18	-0.0
3,832,103	+		DDA3937_RS16850	0.18	-0.3
3,832,103	+		DDA3937_RS16850	0.18	+2.9
3,832,103	+		DDA3937_RS16850	0.18	+1.1
3,832,104	-		DDA3937_RS16850	0.18	-0.3
3,832,104	-		DDA3937_RS16850	0.18	+1.8
3,832,104	-				-0.8
3,832,104	-		DDA3937_RS16850	0.18	+1.1
3,832,104	-		DDA3937_RS16850	0.18	-2.0
3,832,104	-		DDA3937_RS16850	0.18	+1.7
3,832,104	-		DDA3937_RS16850	0.18	-0.9
3,832,136	+		DDA3937_RS16850	0.23	-0.6
3,832,137	-				+4.1
3,832,137	-		DDA3937_RS16850	0.23	-1.6
3,832,137	-				-0.4
3,832,143	+		DDA3937_RS16850	0.24	+0.0
3,832,170	-		DDA3937_RS16850	0.28	+0.2
3,832,170	-		DDA3937_RS16850	0.28	+3.1
3,832,267	+		DDA3937_RS16850	0.43	-0.9
3,832,267	+		DDA3937_RS16850	0.43	-1.3
3,832,268	-		DDA3937_RS16850	0.43	+0.7
3,832,268	-		DDA3937_RS16850	0.43	+1.3
3,832,295	+		DDA3937_RS16850	0.47	-2.2
3,832,386	-		DDA3937_RS16850	0.61	-2.4
3,832,392	-		DDA3937_RS16850	0.62	+1.1
3,832,399	+		DDA3937_RS16850	0.63	-0.4
3,832,399	+		DDA3937_RS16850	0.63	-0.5
3,832,439	+		DDA3937_RS16850	0.69	+0.5
3,832,440	-		DDA3937_RS16850	0.69	+0.8
3,832,442	+		DDA3937_RS16850	0.70	+0.6
3,832,442	+		DDA3937_RS16850	0.70	+0.3
3,832,442	+		DDA3937_RS16850	0.70	-1.0
3,832,442	+		DDA3937_RS16850	0.70	-0.1
3,832,443	-		DDA3937_RS16850	0.70	-0.6
3,832,443	-		DDA3937_RS16850	0.70	-0.4
3,832,447	+		DDA3937_RS16850	0.70	+0.0
3,832,448	-		DDA3937_RS16850	0.70	-0.0
3,832,448	-		DDA3937_RS16850	0.70	+0.9
3,832,451	+		DDA3937_RS16850	0.71	-0.7
3,832,451	+		DDA3937_RS16850	0.71	-0.8
3,832,451	+		DDA3937_RS16850	0.71	-0.8
3,832,452	-		DDA3937_RS16850	0.71	+0.2
3,832,452	-		DDA3937_RS16850	0.71	-1.2
3,832,521	+		DDA3937_RS16850	0.82	-0.3
3,832,527	+		DDA3937_RS16850	0.83	+3.0
3,832,527	+		DDA3937_RS16850	0.83	-0.4
3,832,528	-		DDA3937_RS16850	0.83	+1.4
3,832,528	-		DDA3937_RS16850	0.83	-1.2
3,832,528	-		DDA3937_RS16850	0.83	-1.9
3,832,556	+		DDA3937_RS16850	0.87	-4.1
3,832,556	+		DDA3937_RS16850	0.87	-0.7
3,832,557	-		DDA3937_RS16850	0.87	-0.5
3,832,588	-				-0.3
3,832,634	+				-1.0
3,832,634	+				-0.9
3,832,635	-				+0.6
3,832,638	+				+0.4
3,832,648	+				+0.2
3,832,648	+				-1.4
3,832,661	-				-0.0
3,832,681	-				+0.6
3,832,681	-				+2.7
3,832,689	-				-1.4
3,832,689	-				+2.9
3,832,689	-				-1.2
3,832,711	+				+0.6
3,832,712	-				+1.4
3,832,712	-				+2.4
3,832,712	-				-0.8
3,832,793	-		DDA3937_RS16855	0.11	-1.9
3,832,801	+		DDA3937_RS16855	0.12	+0.0
3,832,872	-		DDA3937_RS16855	0.21	-1.1
3,832,895	-		DDA3937_RS16855	0.24	+1.4
3,832,907	+		DDA3937_RS16855	0.25	+1.6
3,832,908	-		DDA3937_RS16855	0.25	+0.1
3,832,908	-		DDA3937_RS16855	0.25	-1.0
3,832,908	-		DDA3937_RS16855	0.25	+1.7
3,832,908	-		DDA3937_RS16855	0.25	+1.5
3,832,974	-		DDA3937_RS16855	0.33	-1.8
3,833,003	+		DDA3937_RS16855	0.37	+2.1
3,833,004	-				+0.2
3,833,005	+		DDA3937_RS16855	0.37	+0.8
3,833,005	+		DDA3937_RS16855	0.37	-0.0
3,833,006	-		DDA3937_RS16855	0.37	-0.8
3,833,006	-		DDA3937_RS16855	0.37	+0.7
3,833,315	+		DDA3937_RS16855	0.75	+0.6
3,833,315	+		DDA3937_RS16855	0.75	+0.7
3,833,315	+		DDA3937_RS16855	0.75	-2.5
3,833,315	+		DDA3937_RS16855	0.75	+1.9
3,833,315	+		DDA3937_RS16855	0.75	-0.2
3,833,315	+		DDA3937_RS16855	0.75	-1.9
3,833,315	+		DDA3937_RS16855	0.75	-0.0
3,833,315	+		DDA3937_RS16855	0.75	+1.0
3,833,315	+		DDA3937_RS16855	0.75	-0.4
3,833,315	+		DDA3937_RS16855	0.75	+2.6
3,833,315	+		DDA3937_RS16855	0.75	+2.8
3,833,315	+		DDA3937_RS16855	0.75	+1.5
3,833,315	+		DDA3937_RS16855	0.75	+1.0
3,833,315	+		DDA3937_RS16855	0.75	+1.5
3,833,316	-		DDA3937_RS16855	0.75	+0.1
3,833,316	-		DDA3937_RS16855	0.75	-1.2
3,833,316	-		DDA3937_RS16855	0.75	-0.7
3,833,316	-		DDA3937_RS16855	0.75	+1.0
3,833,316	-		DDA3937_RS16855	0.75	-0.4
3,833,316	-		DDA3937_RS16855	0.75	+0.5
3,833,316	-		DDA3937_RS16855	0.75	+0.6
3,833,316	-		DDA3937_RS16855	0.75	+0.3
3,833,316	-		DDA3937_RS16855	0.75	-1.1
3,833,381	+		DDA3937_RS16855	0.83	+0.2
3,833,442	+				-1.9
3,833,443	-				-0.4
3,833,451	-				+1.1
3,833,466	+				+0.6
3,833,467	-				+1.4
3,833,467	-				+0.3
3,833,487	+				-1.7
3,833,487	+				-1.6
3,833,488	-				+1.0
3,833,491	+				+0.6
3,833,491	+				+2.3
3,833,491	+				+1.4
3,833,491	+				+0.1
3,833,491	+				+3.6
3,833,492	-				+0.2
3,833,516	+				+0.6
3,833,516	+				-0.0
3,833,517	-				-0.1
3,833,521	+				+1.0
3,833,522	-				-0.2
3,833,522	-				-0.7
3,833,522	-				-0.8
3,833,524	+				-1.9
3,833,524	+				-0.2
3,833,524	+				+1.2
3,833,524	+				+1.6
3,833,524	+				+0.2
3,833,525	-				-1.5
3,833,525	-				+0.5
3,833,528	+				+1.9
3,833,528	+				-2.5
3,833,529	-				+2.9
3,833,529	-				-0.4
3,833,533	+				+1.6
3,833,534	-				-0.2
3,833,534	-				-1.3
3,833,585	+				-0.7
3,833,585	+				-1.2
3,833,611	+				-1.6
3,833,633	-				+0.0
3,833,643	+				-1.2
3,833,644	-				-1.2
3,833,644	-				+0.3
3,833,791	+		DDA3937_RS16860	0.39	+1.8
3,833,792	-		DDA3937_RS16860	0.39	+0.4
3,833,792	-		DDA3937_RS16860	0.39	+0.6
3,833,812	-		DDA3937_RS16860	0.44	+0.4
3,833,876	-		DDA3937_RS16860	0.60	-0.8
3,833,974	+		DDA3937_RS16860	0.84	+0.9
3,833,975	-		DDA3937_RS16860	0.84	+3.5
3,833,975	-		DDA3937_RS16860	0.84	+0.9
3,833,975	-		DDA3937_RS16860	0.84	-2.1
3,833,990	+		DDA3937_RS16860	0.88	+0.8
3,834,082	+				-0.7
3,834,083	-				-2.7
3,834,083	-				-0.8
3,834,083	-				+1.2
3,834,083	-				+1.2
3,834,083	-				-0.8
3,834,083	-				-1.0
3,834,083	-				-0.0
3,834,084	+				+1.6
3,834,085	-				+1.0
3,834,085	-				+0.6
3,834,085	-				-0.0
3,834,143	+		DDA3937_RS16865	0.15	-2.1
3,834,143	+		DDA3937_RS16865	0.15	-0.2
3,834,143	+		DDA3937_RS16865	0.15	-3.4
3,834,143	+		DDA3937_RS16865	0.15	+1.1
3,834,143	+		DDA3937_RS16865	0.15	+0.2
3,834,143	+		DDA3937_RS16865	0.15	+0.0
3,834,143	+		DDA3937_RS16865	0.15	+0.8
3,834,143	+		DDA3937_RS16865	0.15	-1.2
3,834,144	-		DDA3937_RS16865	0.15	-1.8
3,834,144	-		DDA3937_RS16865	0.15	+1.1
3,834,144	-		DDA3937_RS16865	0.15	+1.1
3,834,144	-		DDA3937_RS16865	0.15	+0.5
3,834,160	+		DDA3937_RS16865	0.17	+0.8
3,834,160	+		DDA3937_RS16865	0.17	+2.4
3,834,160	+		DDA3937_RS16865	0.17	+0.7
3,834,161	-		DDA3937_RS16865	0.18	-1.8
3,834,161	-		DDA3937_RS16865	0.18	+1.1
3,834,161	-		DDA3937_RS16865	0.18	-0.0
3,834,162	+		DDA3937_RS16865	0.18	-0.8
3,834,162	+		DDA3937_RS16865	0.18	-1.0
3,834,162	+		DDA3937_RS16865	0.18	-1.0
3,834,162	+		DDA3937_RS16865	0.18	-1.0
3,834,162	+		DDA3937_RS16865	0.18	-2.3
3,834,163	-		DDA3937_RS16865	0.18	-2.1
3,834,163	-		DDA3937_RS16865	0.18	+1.1
3,834,163	-		DDA3937_RS16865	0.18	-2.3
3,834,163	-		DDA3937_RS16865	0.18	-3.3
3,834,339	+		DDA3937_RS16865	0.43	-2.4
3,834,339	+		DDA3937_RS16865	0.43	+0.9
3,834,339	+		DDA3937_RS16865	0.43	-2.1
3,834,339	+		DDA3937_RS16865	0.43	+0.8
3,834,339	+				+0.6
3,834,340	-		DDA3937_RS16865	0.43	+0.4
3,834,340	-		DDA3937_RS16865	0.43	-3.1
3,834,340	-		DDA3937_RS16865	0.43	-2.2
3,834,340	-		DDA3937_RS16865	0.43	-1.2
3,834,416	+		DDA3937_RS16865	0.54	-0.0
3,834,417	-		DDA3937_RS16865	0.54	-1.8
3,834,449	-		DDA3937_RS16865	0.58	+0.9