Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16730

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,807,034	+		DDA3937_RS16725	0.35	-0.0
3,807,034	+		DDA3937_RS16725	0.35	+0.1
3,807,035	-		DDA3937_RS16725	0.35	+0.1
3,807,319	+		DDA3937_RS16725	0.58	+1.0
3,807,320	-		DDA3937_RS16725	0.58	-2.5
3,807,320	-		DDA3937_RS16725	0.58	-1.3
3,807,320	-		DDA3937_RS16725	0.58	-1.0
3,807,320	-		DDA3937_RS16725	0.58	-1.9
3,807,335	+		DDA3937_RS16725	0.60	+0.9
3,807,336	-		DDA3937_RS16725	0.60	-0.8
3,807,336	-		DDA3937_RS16725	0.60	+1.3
3,807,371	-		DDA3937_RS16725	0.63	+2.0
3,807,390	+				+0.6
3,807,398	-		DDA3937_RS16725	0.65	-1.9
3,807,398	-		DDA3937_RS16725	0.65	-0.6
3,807,450	+		DDA3937_RS16725	0.69	+2.0
3,807,451	-		DDA3937_RS16725	0.69	+1.8
3,807,522	+		DDA3937_RS16725	0.75	+2.0
3,807,523	-		DDA3937_RS16725	0.75	+0.6
3,807,523	-		DDA3937_RS16725	0.75	+0.9
3,807,825	-				-2.4
3,807,825	-				+1.8
3,807,825	-				+0.1
3,807,917	+				-0.4
3,807,924	+				+1.2
3,807,924	+				-0.9
3,807,924	+				+1.3
3,807,924	+				-2.4
3,807,925	-				-1.4
3,807,932	+				-1.2
3,807,933	-				+1.7
3,807,933	-				-0.3
3,807,933	-				-1.4
3,807,948	-				-2.3
3,807,953	+				-0.3
3,807,954	-				-2.9
3,807,983	+				-3.8
3,807,988	+				-2.8
3,807,996	-				-0.0
3,807,996	-				+0.9
3,808,061	+		DDA3937_RS16730	0.11	+2.0
3,808,062	-		DDA3937_RS16730	0.11	-1.6
3,808,119	+		DDA3937_RS16730	0.17	-0.7
3,808,120	-		DDA3937_RS16730	0.17	+4.1
3,808,121	+		DDA3937_RS16730	0.17	+0.2
3,808,121	+		DDA3937_RS16730	0.17	+1.2
3,808,122	-		DDA3937_RS16730	0.17	+1.2
3,808,122	-		DDA3937_RS16730	0.17	+0.7
3,808,122	-		DDA3937_RS16730	0.17	-0.0
3,808,162	-		DDA3937_RS16730	0.21	-0.1
3,808,230	+		DDA3937_RS16730	0.28	-3.5
3,808,230	+		DDA3937_RS16730	0.28	-1.4
3,808,230	+		DDA3937_RS16730	0.28	-0.4
3,808,230	+		DDA3937_RS16730	0.28	+2.1
3,808,231	-		DDA3937_RS16730	0.28	-1.7
3,808,231	-		DDA3937_RS16730	0.28	+0.7
3,808,231	-		DDA3937_RS16730	0.28	+1.4
3,808,231	-		DDA3937_RS16730	0.28	+1.6
3,808,231	-		DDA3937_RS16730	0.28	+2.3
3,808,231	-		DDA3937_RS16730	0.28	+0.9
3,808,231	-		DDA3937_RS16730	0.28	+2.3
3,808,231	-		DDA3937_RS16730	0.28	-1.1
3,808,275	+		DDA3937_RS16730	0.33	-0.2
3,808,276	-		DDA3937_RS16730	0.33	-0.0
3,808,276	-		DDA3937_RS16730	0.33	-1.0
3,808,299	+		DDA3937_RS16730	0.35	-1.0
3,808,300	-		DDA3937_RS16730	0.35	+1.0
3,808,338	-		DDA3937_RS16730	0.39	-2.0
3,808,422	-		DDA3937_RS16730	0.47	+1.0
3,808,509	+		DDA3937_RS16730	0.56	-0.2
3,808,509	+		DDA3937_RS16730	0.56	+1.1
3,808,510	-		DDA3937_RS16730	0.56	+0.1
3,808,543	-		DDA3937_RS16730	0.60	-0.0
3,808,543	-		DDA3937_RS16730	0.60	-0.3
3,808,554	-		DDA3937_RS16730	0.61	-0.3
3,808,554	-				-0.0
3,808,554	-				+1.6
3,808,564	+		DDA3937_RS16730	0.62	-0.8
3,808,565	-		DDA3937_RS16730	0.62	-0.4
3,808,592	-		DDA3937_RS16730	0.64	-2.7
3,808,592	-		DDA3937_RS16730	0.64	-0.0
3,808,592	-		DDA3937_RS16730	0.64	-1.2
3,808,688	+		DDA3937_RS16730	0.74	+1.3
3,808,689	-		DDA3937_RS16730	0.74	-2.1
3,808,701	+		DDA3937_RS16730	0.75	-0.5
3,808,721	+		DDA3937_RS16730	0.77	+1.8
3,808,721	+		DDA3937_RS16730	0.77	-0.0
3,808,722	-		DDA3937_RS16730	0.77	-0.0
3,808,722	-		DDA3937_RS16730	0.77	+0.7
3,808,722	-		DDA3937_RS16730	0.77	-0.1
3,808,722	-		DDA3937_RS16730	0.77	+0.1
3,808,920	-				-1.4
3,808,944	+				-3.5
3,808,944	+				+1.7
3,808,944	+				+0.1
3,808,944	+				+3.0
3,808,945	-				-2.0
3,808,945	-				+0.6
3,808,945	-				+0.6
3,808,945	-				+0.4
3,808,962	+				-0.3
3,809,091	+				-1.9
3,809,092	-				-2.4
3,809,100	-				+0.3
3,809,100	-				+0.1
3,809,122	+				+0.8
3,809,123	-				-1.9
3,809,125	+				-0.4
3,809,126	-				+1.4
3,809,126	-				-1.9
3,809,126	-				-0.7
3,809,179	+				-1.4
3,809,217	+				+0.6
3,809,218	-				+0.9
3,809,220	+				-0.8
3,809,225	+				-2.1
3,809,225	+				+0.8
3,809,225	+				-1.9
3,809,229	-				+1.8
3,809,245	+				-0.4
3,809,245	+				+1.2
3,809,274	+				+1.6
3,809,274	+				-1.8
3,809,274	+				+1.4
3,809,274	+				-2.6
3,809,274	+				+1.6
3,809,275	-				-1.0
3,809,275	-				-1.8
3,809,275	-				+0.1
3,809,275	-				+1.2
3,809,275	-				+0.6
3,809,277	+				+1.3
3,809,277	+				+0.5
3,809,316	-				-2.4
3,809,353	+				-0.0
3,809,353	+				-1.9
3,809,354	-				+2.1
3,809,354	-				+0.9
3,809,354	-				-1.4
3,809,354	-				-1.4
3,809,354	-				-3.1
3,809,356	+				-0.4
3,809,422	-		DDA3937_RS16740	0.13	-3.7
3,809,447	-		DDA3937_RS16740	0.15	-1.1
3,809,682	+				+3.1
3,809,770	+		DDA3937_RS16740	0.42	-1.8
3,809,770	+		DDA3937_RS16740	0.42	+0.7
3,809,771	-		DDA3937_RS16740	0.42	-0.9
3,809,853	+		DDA3937_RS16740	0.49	+0.4
3,809,853	+		DDA3937_RS16740	0.49	+3.8
3,809,853	+		DDA3937_RS16740	0.49	-0.6
3,809,854	-		DDA3937_RS16740	0.49	-1.1
3,809,854	-		DDA3937_RS16740	0.49	-0.1
3,809,854	-		DDA3937_RS16740	0.49	+0.9
3,809,854	-		DDA3937_RS16740	0.49	-0.4
3,809,854	-		DDA3937_RS16740	0.49	-1.0
3,809,867	+		DDA3937_RS16740	0.50	+1.3
3,809,909	+		DDA3937_RS16740	0.54	-1.3
3,809,914	-		DDA3937_RS16740	0.54	-2.8
3,809,914	-		DDA3937_RS16740	0.54	-0.6