Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15975

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,652,576	+		DDA3937_RS15965	0.70	-0.0
3,652,576	+		DDA3937_RS15965	0.70	-0.4
3,652,576	+		DDA3937_RS15965	0.70	-1.5
3,652,576	+		DDA3937_RS15965	0.70	+0.1
3,652,577	-		DDA3937_RS15965	0.70	-0.2
3,652,577	-		DDA3937_RS15965	0.70	-1.2
3,652,577	-		DDA3937_RS15965	0.70	+0.6
3,652,577	-		DDA3937_RS15965	0.70	+0.6
3,652,580	+		DDA3937_RS15965	0.71	-2.0
3,652,580	+		DDA3937_RS15965	0.71	-0.4
3,652,580	+		DDA3937_RS15965	0.71	-1.6
3,652,580	+				+2.4
3,652,580	+		DDA3937_RS15965	0.71	+2.3
3,652,581	-		DDA3937_RS15965	0.71	+0.6
3,652,581	-		DDA3937_RS15965	0.71	-0.4
3,652,581	-		DDA3937_RS15965	0.71	-0.8
3,652,581	-		DDA3937_RS15965	0.71	-1.0
3,652,581	-				+1.2
3,652,581	-		DDA3937_RS15965	0.71	+0.6
3,652,627	+		DDA3937_RS15965	0.83	-0.1
3,652,649	+		DDA3937_RS15965	0.89	+1.4
3,652,649	+		DDA3937_RS15965	0.89	-2.2
3,652,649	+		DDA3937_RS15965	0.89	+2.5
3,652,650	-		DDA3937_RS15965	0.90	-1.6
3,652,650	-		DDA3937_RS15965	0.90	+1.4
3,652,695	+				+1.8
3,652,760	+				+0.1
3,652,760	+				-2.1
3,652,808	+				+0.1
3,652,902	+		DDA3937_RS15970	0.19	-2.1
3,652,903	-		DDA3937_RS15970	0.19	-0.3
3,652,903	-		DDA3937_RS15970	0.19	-0.9
3,652,903	-		DDA3937_RS15970	0.19	-1.2
3,652,903	-		DDA3937_RS15970	0.19	-0.4
3,652,903	-		DDA3937_RS15970	0.19	-0.4
3,652,903	-		DDA3937_RS15970	0.19	+0.1
3,652,903	-		DDA3937_RS15970	0.19	-1.6
3,652,904	+		DDA3937_RS15970	0.19	-1.8
3,652,904	+		DDA3937_RS15970	0.19	-0.0
3,652,904	+		DDA3937_RS15970	0.19	-1.8
3,652,904	+		DDA3937_RS15970	0.19	-0.1
3,652,904	+		DDA3937_RS15970	0.19	-0.0
3,652,904	+		DDA3937_RS15970	0.19	-2.7
3,652,904	+		DDA3937_RS15970	0.19	-0.8
3,652,904	+		DDA3937_RS15970	0.19	-1.5
3,652,904	+		DDA3937_RS15970	0.19	+0.3
3,652,905	-		DDA3937_RS15970	0.19	-1.2
3,652,905	-		DDA3937_RS15970	0.19	-0.6
3,652,905	-		DDA3937_RS15970	0.19	-0.7
3,652,905	-		DDA3937_RS15970	0.19	-0.3
3,652,964	+		DDA3937_RS15970	0.27	-1.6
3,652,964	+		DDA3937_RS15970	0.27	-2.4
3,652,965	-		DDA3937_RS15970	0.27	+1.4
3,652,969	+		DDA3937_RS15970	0.27	-1.1
3,652,970	-		DDA3937_RS15970	0.27	-1.2
3,652,982	+		DDA3937_RS15970	0.29	+0.1
3,653,205	-		DDA3937_RS15970	0.58	-0.1
3,653,259	+		DDA3937_RS15970	0.65	+0.9
3,653,260	-		DDA3937_RS15970	0.65	-0.4
3,653,260	-		DDA3937_RS15970	0.65	+1.7
3,653,260	-		DDA3937_RS15970	0.65	-1.0
3,653,313	+		DDA3937_RS15970	0.72	-1.4
3,653,314	-		DDA3937_RS15970	0.72	-1.5
3,653,357	+		DDA3937_RS15970	0.78	+0.8
3,653,357	+		DDA3937_RS15970	0.78	-0.8
3,653,361	+		DDA3937_RS15970	0.78	+2.2
3,653,361	+		DDA3937_RS15970	0.78	-3.0
3,653,361	+		DDA3937_RS15970	0.78	-0.5
3,653,417	+		DDA3937_RS15970	0.85	-0.6
3,653,431	-		DDA3937_RS15970	0.87	+0.4
3,653,516	+				-1.2
3,653,516	+				+0.4
3,653,516	+				-1.2
3,653,517	-				-0.8
3,653,517	-				+0.8
3,653,518	+				-2.0
3,653,518	+				+3.4
3,653,534	+				+0.7
3,653,534	+				+0.4
3,653,535	-				+2.4
3,653,546	+				+2.1
3,653,597	+				-3.1
3,653,687	+		DDA3937_RS15975	0.17	-2.2
3,653,838	-		DDA3937_RS15975	0.34	+0.3
3,653,867	-		DDA3937_RS15975	0.37	-0.8
3,653,867	-		DDA3937_RS15975	0.37	+2.9
3,653,867	-		DDA3937_RS15975	0.37	-1.9
3,653,889	-		DDA3937_RS15975	0.39	-1.4
3,653,889	-		DDA3937_RS15975	0.39	-1.2
3,654,091	+		DDA3937_RS15975	0.61	-1.7
3,654,091	+		DDA3937_RS15975	0.61	+0.1
3,654,091	+		DDA3937_RS15975	0.61	-2.3
3,654,092	-		DDA3937_RS15975	0.61	-2.0
3,654,092	-		DDA3937_RS15975	0.61	+1.4
3,654,134	-				+0.6
3,654,137	-		DDA3937_RS15975	0.66	-1.5
3,654,349	+		DDA3937_RS15975	0.89	-1.9
3,654,349	+		DDA3937_RS15975	0.89	+0.2
3,654,349	+		DDA3937_RS15975	0.89	-0.2
3,654,350	-		DDA3937_RS15975	0.89	-2.0
3,654,350	-		DDA3937_RS15975	0.89	+1.2
3,654,350	-		DDA3937_RS15975	0.89	+1.0
3,654,350	-		DDA3937_RS15975	0.89	+0.3
3,654,410	-				-2.3
3,654,442	+				-1.4
3,654,442	+				-1.2
3,654,442	+				-1.2
3,654,442	+				-0.4
3,654,442	+				+1.0
3,654,442	+				+0.8
3,654,442	+				-1.2
3,654,442	+				-1.6
3,654,442	+				+1.4
3,654,442	+				-0.4
3,654,442	+				+0.6
3,654,442	+				-1.1
3,654,442	+				-2.0
3,654,442	+				-4.0
3,654,443	-				+0.8
3,654,443	-				+0.6
3,654,443	-				-1.2
3,654,443	-				+0.1
3,654,443	-				-0.8
3,654,443	-				+1.8
3,654,443	-				-0.4
3,654,443	-				+1.3
3,654,443	-				-2.2
3,654,443	-				-1.7
3,654,443	-				+2.2
3,654,443	-				-0.6
3,654,443	-				-1.0
3,654,443	-				-1.0
3,654,443	-				+0.1
3,654,443	-				+1.5
3,654,443	-				+2.0
3,654,443	-				-0.3
3,654,443	-				-0.0
3,654,443	-				+1.4
3,654,449	+				-0.0
3,654,449	+				+2.1
3,654,450	-				+1.4
3,654,450	-				+0.4
3,654,466	+				-1.6
3,654,466	+				+1.1
3,654,466	+				-2.3
3,654,467	-				-1.1
3,654,467	-				+0.1
3,654,467	-				-2.3
3,654,467	-				+2.7
3,654,467	-				+0.3
3,654,467	-				-0.4
3,654,467	-				+0.2
3,654,470	-				-0.0
3,654,529	+				+1.6
3,654,529	+				-1.3
3,654,529	+				-2.4
3,654,529	+				-1.3
3,654,529	+				-1.2
3,654,531	+				-3.1
3,654,531	+				-2.8
3,654,531	+				-2.0
3,654,534	+				-1.9
3,654,534	+				-0.2
3,655,414	+		DDA3937_RS15985	0.29	+5.1
3,655,415	-		DDA3937_RS15985	0.29	+2.2
3,655,415	-		DDA3937_RS15985	0.29	+3.3
3,655,415	-		DDA3937_RS15985	0.29	+2.3