Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15325

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,517,838	+		DDA3937_RS15320	0.42	+1.2
3,517,838	+		DDA3937_RS15320	0.42	-1.9
3,517,839	-		DDA3937_RS15320	0.42	+0.9
3,517,839	-		DDA3937_RS15320	0.42	-1.2
3,517,840	+		DDA3937_RS15320	0.42	-0.4
3,517,840	+		DDA3937_RS15320	0.42	-1.3
3,517,841	-		DDA3937_RS15320	0.42	+0.4
3,517,841	-		DDA3937_RS15320	0.42	+0.7
3,517,917	+		DDA3937_RS15320	0.49	+3.0
3,518,039	+		DDA3937_RS15320	0.59	-0.9
3,518,131	-		DDA3937_RS15320	0.67	-2.5
3,518,250	+		DDA3937_RS15320	0.78	-2.8
3,518,250	+		DDA3937_RS15320	0.78	+0.0
3,518,250	+		DDA3937_RS15320	0.78	-1.5
3,518,250	+		DDA3937_RS15320	0.78	+0.0
3,518,250	+		DDA3937_RS15320	0.78	+0.7
3,518,250	+		DDA3937_RS15320	0.78	+0.8
3,518,251	-		DDA3937_RS15320	0.78	-2.1
3,518,251	-		DDA3937_RS15320	0.78	+0.3
3,518,317	+		DDA3937_RS15320	0.84	-3.2
3,518,363	+		DDA3937_RS15320	0.88	+4.4
3,518,363	+		DDA3937_RS15320	0.88	-2.2
3,518,364	-		DDA3937_RS15320	0.88	-1.6
3,518,365	+		DDA3937_RS15320	0.88	-0.5
3,518,366	-		DDA3937_RS15320	0.88	+0.9
3,518,366	-		DDA3937_RS15320	0.88	-2.6
3,518,366	-		DDA3937_RS15320	0.88	-1.3
3,518,369	+		DDA3937_RS15320	0.88	-0.3
3,518,369	+		DDA3937_RS15320	0.88	-1.4
3,518,369	+		DDA3937_RS15320	0.88	+0.1
3,518,369	+		DDA3937_RS15320	0.88	-0.5
3,518,369	+		DDA3937_RS15320	0.88	+0.7
3,518,369	+		DDA3937_RS15320	0.88	-0.4
3,518,369	+		DDA3937_RS15320	0.88	-2.3
3,518,369	+		DDA3937_RS15320	0.88	+0.6
3,518,369	+		DDA3937_RS15320	0.88	+0.2
3,518,369	+		DDA3937_RS15320	0.88	+1.4
3,518,369	+		DDA3937_RS15320	0.88	-0.4
3,518,369	+		DDA3937_RS15320	0.88	-0.9
3,518,370	-		DDA3937_RS15320	0.88	-0.6
3,518,370	-		DDA3937_RS15320	0.88	-3.6
3,518,370	-		DDA3937_RS15320	0.88	-0.1
3,518,370	-		DDA3937_RS15320	0.88	-0.7
3,518,370	-		DDA3937_RS15320	0.88	+1.0
3,518,370	-		DDA3937_RS15320	0.88	+0.1
3,518,370	-		DDA3937_RS15320	0.88	-0.4
3,518,370	-		DDA3937_RS15320	0.88	-0.8
3,518,370	-		DDA3937_RS15320	0.88	-0.1
3,518,370	-		DDA3937_RS15320	0.88	+0.1
3,518,370	-		DDA3937_RS15320	0.88	+0.0
3,518,370	-		DDA3937_RS15320	0.88	-0.7
3,518,370	-		DDA3937_RS15320	0.88	-1.2
3,518,370	-		DDA3937_RS15320	0.88	-0.5
3,518,370	-		DDA3937_RS15320	0.88	-1.6
3,518,370	-		DDA3937_RS15320	0.88	-3.7
3,518,370	-		DDA3937_RS15320	0.88	+1.1
3,518,370	-		DDA3937_RS15320	0.88	-1.7
3,518,370	-		DDA3937_RS15320	0.88	-1.4
3,518,371	+		DDA3937_RS15320	0.88	-0.4
3,518,371	+		DDA3937_RS15320	0.88	+1.9
3,518,440	+				-1.8
3,518,440	+				-2.6
3,518,441	-				+0.3
3,518,441	-				+0.3
3,518,441	-				+0.8
3,518,441	-				-0.0
3,518,504	+				+0.8
3,518,609	+				+0.5
3,518,609	+				-2.5
3,518,610	-				-3.4
3,518,610	-				-0.7
3,518,713	+		DDA3937_RS15325	0.10	+1.0
3,518,713	+		DDA3937_RS15325	0.10	+2.0
3,518,714	-		DDA3937_RS15325	0.11	-2.8
3,518,739	+		DDA3937_RS15325	0.13	+0.7
3,518,739	+		DDA3937_RS15325	0.13	-0.4
3,518,786	+		DDA3937_RS15325	0.18	-2.4
3,518,786	+		DDA3937_RS15325	0.18	+0.1
3,518,839	+		DDA3937_RS15325	0.23	+1.6
3,518,840	-		DDA3937_RS15325	0.23	+0.6
3,518,840	-		DDA3937_RS15325	0.23	-1.7
3,518,891	+		DDA3937_RS15325	0.29	+1.6
3,518,892	-		DDA3937_RS15325	0.29	-1.2
3,518,892	-		DDA3937_RS15325	0.29	+0.2
3,518,963	-		DDA3937_RS15325	0.36	+1.4
3,518,966	+		DDA3937_RS15325	0.36	-0.7
3,518,966	+		DDA3937_RS15325	0.36	-0.7
3,518,966	+		DDA3937_RS15325	0.36	-1.0
3,518,966	+		DDA3937_RS15325	0.36	-1.6
3,518,966	+		DDA3937_RS15325	0.36	-0.7
3,518,966	+		DDA3937_RS15325	0.36	-1.0
3,518,966	+		DDA3937_RS15325	0.36	-1.6
3,518,966	+		DDA3937_RS15325	0.36	+1.3
3,518,966	+		DDA3937_RS15325	0.36	-2.8
3,518,966	+		DDA3937_RS15325	0.36	+0.0
3,518,967	-		DDA3937_RS15325	0.36	-1.9
3,518,967	-		DDA3937_RS15325	0.36	+3.2
3,518,967	-		DDA3937_RS15325	0.36	-0.7
3,518,967	-		DDA3937_RS15325	0.36	-1.5
3,519,010	+		DDA3937_RS15325	0.41	-2.0
3,519,043	-		DDA3937_RS15325	0.44	-1.3
3,519,166	-		DDA3937_RS15325	0.57	-2.7
3,519,166	-		DDA3937_RS15325	0.57	-1.6
3,519,166	-		DDA3937_RS15325	0.57	-2.1
3,519,167	+		DDA3937_RS15325	0.57	-0.9
3,519,171	+		DDA3937_RS15325	0.57	-0.7
3,519,228	+		DDA3937_RS15325	0.63	-3.0
3,519,239	+		DDA3937_RS15325	0.64	-1.0
3,519,239	+		DDA3937_RS15325	0.64	-1.9
3,519,243	+		DDA3937_RS15325	0.65	-0.3
3,519,244	-		DDA3937_RS15325	0.65	-2.1
3,519,244	-		DDA3937_RS15325	0.65	-1.7
3,519,297	-		DDA3937_RS15325	0.70	+2.1
3,519,297	-		DDA3937_RS15325	0.70	-0.6
3,519,297	-		DDA3937_RS15325	0.70	-0.9
3,519,307	+		DDA3937_RS15325	0.71	-3.5
3,519,322	+		DDA3937_RS15325	0.73	+1.0
3,519,399	-		DDA3937_RS15325	0.80	+0.4
3,519,399	-		DDA3937_RS15325	0.80	-4.6
3,519,399	-		DDA3937_RS15325	0.80	-1.7
3,519,430	+		DDA3937_RS15325	0.84	+0.6
3,519,430	+		DDA3937_RS15325	0.84	-3.1
3,519,431	-		DDA3937_RS15325	0.84	+1.3
3,519,435	+		DDA3937_RS15325	0.84	+0.0
3,519,435	+		DDA3937_RS15325	0.84	-2.6
3,519,435	+		DDA3937_RS15325	0.84	-0.4
3,519,435	+		DDA3937_RS15325	0.84	-1.2
3,519,436	-		DDA3937_RS15325	0.84	-1.0
3,519,436	-		DDA3937_RS15325	0.84	+0.3
3,519,436	-		DDA3937_RS15325	0.84	-2.4
3,519,436	-		DDA3937_RS15325	0.84	+0.4
3,519,436	-		DDA3937_RS15325	0.84	-1.6
3,519,438	-		DDA3937_RS15325	0.84	-0.7
3,519,438	-		DDA3937_RS15325	0.84	-2.7
3,519,438	-		DDA3937_RS15325	0.84	-2.7
3,519,440	+		DDA3937_RS15325	0.85	-1.3
3,519,454	+		DDA3937_RS15325	0.86	-2.9
3,519,454	+		DDA3937_RS15325	0.86	+2.1
3,519,569	+				-1.7
3,519,588	+				-0.6
3,519,594	-				-0.1
3,519,594	-				-1.0
3,519,596	+				+1.6
3,519,596	+				+2.9
3,519,596	+				-0.5
3,519,597	-				-1.7
3,519,597	-				-1.2
3,519,597	-				+1.3
3,519,597	-				-1.0
3,519,597	-				-0.4
3,519,603	+				+2.8
3,519,603	+				-2.5
3,519,683	+				+1.0
3,519,683	+				+2.6
3,519,683	+				+1.6
3,519,683	+				-0.7
3,519,683	+				+0.6
3,519,683	+				-0.7
3,519,683	+				+0.8
3,519,684	-				-3.4
3,519,684	-				-2.4
3,519,684	-				-2.2
3,519,724	-				-2.1
3,519,741	-				-0.6
3,519,775	-				+0.7
3,519,805	+				-1.9
3,519,843	-		DDA3937_RS15330	0.14	+1.7
3,519,862	+				+0.6
3,519,862	+				+1.6
3,519,953	-		DDA3937_RS15330	0.27	+2.4
3,520,028	-		DDA3937_RS15330	0.36	-0.1
3,520,063	+		DDA3937_RS15330	0.40	-3.0
3,520,097	-		DDA3937_RS15330	0.44	+1.8
3,520,127	-		DDA3937_RS15330	0.47	-0.8
3,520,144	+		DDA3937_RS15330	0.49	-0.2
3,520,224	-		DDA3937_RS15330	0.59	-1.0
3,520,224	-		DDA3937_RS15330	0.59	+1.1
3,520,224	-		DDA3937_RS15330	0.59	+0.6
3,520,247	-		DDA3937_RS15330	0.61	-1.2
3,520,247	-		DDA3937_RS15330	0.61	-0.9
3,520,247	-		DDA3937_RS15330	0.61	+0.5
3,520,258	+		DDA3937_RS15330	0.63	-2.6
3,520,258	+		DDA3937_RS15330	0.63	-2.1
3,520,258	+		DDA3937_RS15330	0.63	-0.4
3,520,319	-		DDA3937_RS15330	0.70	+1.9
3,520,320	+		DDA3937_RS15330	0.70	-2.6
3,520,321	-		DDA3937_RS15330	0.70	+1.8
3,520,321	-		DDA3937_RS15330	0.70	-0.6
3,520,321	-		DDA3937_RS15330	0.70	-2.9
3,520,360	+		DDA3937_RS15330	0.75	+0.3
3,520,360	+		DDA3937_RS15330	0.75	+0.2
3,520,361	-		DDA3937_RS15330	0.75	-2.2
3,520,380	-		DDA3937_RS15330	0.77	-3.1
3,520,388	-		DDA3937_RS15330	0.78	+0.0
3,520,447	+				-0.7
3,520,449	+		DDA3937_RS15330	0.85	-0.7
3,520,449	+		DDA3937_RS15330	0.85	+0.0
3,520,450	-		DDA3937_RS15330	0.85	-1.7
3,520,450	-		DDA3937_RS15330	0.85	-2.1
3,520,450	-		DDA3937_RS15330	0.85	+0.0
3,520,450	-		DDA3937_RS15330	0.85	-1.8
3,520,509	-				-0.4
3,520,509	-				-0.5
3,520,509	-				+3.1
3,520,528	+				-0.2
3,520,540	+				-1.6
3,520,540	+				+1.0
3,520,541	-				-1.6
3,520,576	+				-0.7