Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15070

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,456,828	+				+0.6
3,456,899	+		DDA3937_RS15065	0.10	-1.2
3,456,899	+		DDA3937_RS15065	0.10	+1.3
3,456,900	-		DDA3937_RS15065	0.10	-1.6
3,456,952	-		DDA3937_RS15065	0.17	+0.0
3,456,952	-		DDA3937_RS15065	0.17	-0.7
3,457,010	-		DDA3937_RS15065	0.24	-1.9
3,457,010	-		DDA3937_RS15065	0.24	-0.4
3,457,060	+		DDA3937_RS15065	0.30	+0.9
3,457,060	+		DDA3937_RS15065	0.30	-1.8
3,457,060	+		DDA3937_RS15065	0.30	-1.2
3,457,060	+		DDA3937_RS15065	0.30	-1.1
3,457,061	-		DDA3937_RS15065	0.30	-0.4
3,457,094	+		DDA3937_RS15065	0.35	-1.4
3,457,094	+				+0.6
3,457,094	+		DDA3937_RS15065	0.35	+0.5
3,457,094	+		DDA3937_RS15065	0.35	-1.0
3,457,094	+		DDA3937_RS15065	0.35	-1.7
3,457,094	+		DDA3937_RS15065	0.35	-0.4
3,457,094	+		DDA3937_RS15065	0.35	-1.7
3,457,095	-		DDA3937_RS15065	0.35	+0.0
3,457,095	-		DDA3937_RS15065	0.35	-1.4
3,457,184	-		DDA3937_RS15065	0.46	-1.7
3,457,272	+		DDA3937_RS15065	0.57	-2.0
3,457,283	+				-0.7
3,457,283	+		DDA3937_RS15065	0.58	-0.7
3,457,283	+		DDA3937_RS15065	0.58	+0.0
3,457,284	-		DDA3937_RS15065	0.58	+1.8
3,457,284	-		DDA3937_RS15065	0.58	+1.0
3,457,403	+		DDA3937_RS15065	0.73	-1.0
3,457,403	+		DDA3937_RS15065	0.73	-1.6
3,457,404	-		DDA3937_RS15065	0.73	+0.8
3,457,404	-				+0.0
3,457,498	+		DDA3937_RS15065	0.85	+2.1
3,457,499	-		DDA3937_RS15065	0.85	+0.8
3,457,499	-		DDA3937_RS15065	0.85	-1.6
3,457,499	-		DDA3937_RS15065	0.85	+1.8
3,457,499	-		DDA3937_RS15065	0.85	-2.2
3,457,499	-		DDA3937_RS15065	0.85	+0.0
3,457,606	+				+1.0
3,457,606	+				+0.5
3,457,607	-				-1.0
3,457,607	-				+1.0
3,457,627	+				+0.3
3,457,627	+				+0.1
3,457,850	+		DDA3937_RS15070	0.11	+0.6
3,457,922	+		DDA3937_RS15070	0.15	-1.5
3,458,010	+		DDA3937_RS15070	0.20	-0.7
3,458,357	+		DDA3937_RS15070	0.37	+0.7
3,458,357	+		DDA3937_RS15070	0.37	+0.7
3,458,357	+		DDA3937_RS15070	0.37	+0.9
3,458,358	-		DDA3937_RS15070	0.38	+1.8
3,458,409	+		DDA3937_RS15070	0.40	-1.4
3,458,409	+		DDA3937_RS15070	0.40	-1.6
3,458,409	+		DDA3937_RS15070	0.40	-1.2
3,458,410	-		DDA3937_RS15070	0.40	-0.1
3,458,452	+		DDA3937_RS15070	0.42	-1.3
3,458,452	+		DDA3937_RS15070	0.42	-0.0
3,458,452	+		DDA3937_RS15070	0.42	-0.1
3,458,453	-		DDA3937_RS15070	0.42	-2.4
3,458,453	-		DDA3937_RS15070	0.42	+1.5
3,458,453	-		DDA3937_RS15070	0.42	-0.4
3,458,453	-		DDA3937_RS15070	0.42	-1.9
3,458,453	-		DDA3937_RS15070	0.42	+0.2
3,458,453	-		DDA3937_RS15070	0.42	-0.7
3,458,453	-		DDA3937_RS15070	0.42	+1.0
3,458,453	-		DDA3937_RS15070	0.42	+0.7
3,458,453	-		DDA3937_RS15070	0.42	-2.7
3,458,551	-		DDA3937_RS15070	0.47	-2.9
3,458,551	-		DDA3937_RS15070	0.47	+2.6
3,458,560	+		DDA3937_RS15070	0.48	-1.1
3,458,560	+		DDA3937_RS15070	0.48	-0.2
3,458,561	-		DDA3937_RS15070	0.48	-0.7
3,458,561	-		DDA3937_RS15070	0.48	-1.0
3,458,561	-		DDA3937_RS15070	0.48	+0.3
3,458,708	+		DDA3937_RS15070	0.56	+1.9
3,458,715	-		DDA3937_RS15070	0.56	+0.6
3,458,715	-		DDA3937_RS15070	0.56	-2.2
3,458,715	-		DDA3937_RS15070	0.56	-2.1
3,458,834	+		DDA3937_RS15070	0.62	+0.1
3,458,835	-		DDA3937_RS15070	0.62	-2.4
3,458,941	+		DDA3937_RS15070	0.67	+1.0
3,458,942	-		DDA3937_RS15070	0.68	-3.1
3,459,017	+		DDA3937_RS15070	0.71	-0.6
3,459,031	+		DDA3937_RS15070	0.72	+0.3
3,459,031	+		DDA3937_RS15070	0.72	-2.4
3,459,032	-		DDA3937_RS15070	0.72	-2.4
3,459,032	-		DDA3937_RS15070	0.72	-0.7
3,459,032	-		DDA3937_RS15070	0.72	-0.5
3,459,032	-		DDA3937_RS15070	0.72	+0.6
3,459,034	+		DDA3937_RS15070	0.72	-0.1
3,459,101	+		DDA3937_RS15070	0.76	-1.8
3,459,124	+		DDA3937_RS15070	0.77	-0.9
3,459,124	+		DDA3937_RS15070	0.77	-0.4
3,459,124	+		DDA3937_RS15070	0.77	-0.4
3,459,289	-		DDA3937_RS15070	0.85	-0.5
3,459,514	-				+0.4
3,459,539	+				-0.4
3,459,539	+				-1.3
3,459,539	+				-0.4
3,459,539	+				-1.0
3,459,539	+				-1.7
3,459,540	-				+1.7
3,459,540	-				-1.9
3,459,541	+				-2.4
3,459,549	-				-1.6
3,459,549	-				-0.7
3,459,549	-				+0.6
3,459,549	-				+0.2
3,459,574	+				-2.7
3,459,574	+				+0.6
3,459,574	+				-2.0
3,459,575	-				+0.2
3,459,575	-				-0.2
3,459,575	-				-2.1
3,459,614	+				+0.6
3,459,627	-				-2.5
3,459,643	-				+1.6
3,459,681	+				+1.1
3,459,690	+				+1.0
3,459,698	+				-1.7
3,459,698	+				-1.2
3,459,699	-				-0.1
3,459,699	-				-1.4
3,459,699	-				-0.2
3,459,699	-				+0.9
3,459,727	+				-0.7
3,459,728	-				-1.3
3,459,728	-				+1.0
3,459,728	-				+0.6
3,459,738	+				-0.1
3,459,739	-				+0.1
3,459,739	-				-0.5
3,459,739	-				-0.5
3,459,740	+				-1.0
3,459,740	+				+0.1
3,459,741	-				-0.3
3,459,741	-				-1.7
3,459,748	+				-1.7
3,459,748	+				+0.6
3,459,749	-				+0.2
3,459,749	-				+1.0
3,459,750	+				+0.0
3,459,750	+				-1.7
3,459,750	+				-0.7
3,459,750	+				+1.2
3,459,751	-				+0.9
3,459,751	-				+0.6
3,459,761	+				-1.3
3,459,762	-				-0.5
3,459,820	+				-1.7
3,459,820	+				+2.4
3,459,820	+				-2.0
3,459,820	+				-3.3
3,459,832	+				-0.5
3,459,832	+				-1.9
3,459,832	+				-0.3
3,459,832	+				+0.5
3,459,833	-				-1.6
3,459,833	-				-2.1
3,459,833	-				-2.0
3,459,841	+				+0.6
3,459,841	+				+1.9
3,459,841	+				-1.6
3,459,841	+				-0.5
3,459,842	-				+1.0
3,459,842	-				-1.0
3,459,842	-				+0.3
3,459,842	-				+0.8
3,459,842	-				-3.2
3,459,842	-				-2.5
3,459,842	-				+0.3
3,459,877	+				-1.1