Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15055

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,453,026	+		DDA3937_RS15045	0.85	+2.0
3,453,026	+		DDA3937_RS15045	0.85	+0.3
3,453,027	-		DDA3937_RS15045	0.86	+1.8
3,453,045	+		DDA3937_RS15045	0.88	-1.2
3,453,112	+				-1.9
3,453,113	-				+2.1
3,453,113	-				+0.7
3,453,181	-				+1.3
3,453,184	+				+0.7
3,453,190	+				-1.4
3,453,190	+				+2.2
3,453,191	-				-1.6
3,453,191	-				-2.1
3,453,191	-				+1.1
3,453,191	-				+0.2
3,453,191	-				-2.0
3,453,194	+				+0.6
3,453,194	+				+3.0
3,453,195	-				+1.2
3,453,195	-				-0.6
3,453,206	+				-0.9
3,453,206	+				+0.7
3,453,207	-				+0.3
3,453,275	+				-0.4
3,453,502	+				+0.0
3,453,587	+		DDA3937_RS15050	0.41	-2.2
3,453,587	+		DDA3937_RS15050	0.41	+2.3
3,453,587	+		DDA3937_RS15050	0.41	+1.5
3,453,587	+		DDA3937_RS15050	0.41	+0.7
3,453,588	-		DDA3937_RS15050	0.41	-0.7
3,453,588	-		DDA3937_RS15050	0.41	+0.4
3,453,588	-		DDA3937_RS15050	0.41	-1.1
3,453,588	-		DDA3937_RS15050	0.41	+3.1
3,453,590	+		DDA3937_RS15050	0.41	+1.2
3,453,590	+		DDA3937_RS15050	0.41	+2.5
3,453,590	+		DDA3937_RS15050	0.41	+1.6
3,453,590	+		DDA3937_RS15050	0.41	-0.8
3,453,590	+		DDA3937_RS15050	0.41	+2.2
3,453,591	-		DDA3937_RS15050	0.42	+0.6
3,453,618	+		DDA3937_RS15050	0.46	+1.3
3,453,618	+		DDA3937_RS15050	0.46	+0.8
3,453,619	-		DDA3937_RS15050	0.47	-1.1
3,453,619	-		DDA3937_RS15050	0.47	-0.3
3,453,723	+		DDA3937_RS15050	0.66	+1.0
3,453,724	-		DDA3937_RS15050	0.66	-2.1
3,453,724	-		DDA3937_RS15050	0.66	-0.4
3,454,088	+		DDA3937_RS15055	0.13	+0.0
3,454,089	-		DDA3937_RS15055	0.13	+0.6
3,454,194	+		DDA3937_RS15055	0.21	+1.6
3,454,194	+		DDA3937_RS15055	0.21	+0.7
3,454,194	+		DDA3937_RS15055	0.21	-1.9
3,454,194	+		DDA3937_RS15055	0.21	+1.1
3,454,194	+		DDA3937_RS15055	0.21	+0.3
3,454,195	-		DDA3937_RS15055	0.21	+1.2
3,454,269	+		DDA3937_RS15055	0.26	+1.1
3,454,269	+		DDA3937_RS15055	0.26	-0.4
3,454,353	+		DDA3937_RS15055	0.32	-0.2
3,454,354	-		DDA3937_RS15055	0.32	-1.7
3,454,396	+		DDA3937_RS15055	0.36	-1.9
3,454,397	-		DDA3937_RS15055	0.36	-0.4
3,454,397	-		DDA3937_RS15055	0.36	+1.1
3,454,585	+		DDA3937_RS15055	0.49	+1.9
3,454,585	+		DDA3937_RS15055	0.49	+0.1
3,454,585	+		DDA3937_RS15055	0.49	-0.3
3,454,585	+		DDA3937_RS15055	0.49	+0.7
3,454,585	+		DDA3937_RS15055	0.49	+0.7
3,454,585	+		DDA3937_RS15055	0.49	-2.4
3,454,585	+		DDA3937_RS15055	0.49	+0.1
3,454,585	+		DDA3937_RS15055	0.49	+0.4
3,454,585	+		DDA3937_RS15055	0.49	+1.3
3,454,585	+		DDA3937_RS15055	0.49	-0.6
3,454,585	+		DDA3937_RS15055	0.49	+1.0
3,454,585	+		DDA3937_RS15055	0.49	-0.6
3,454,585	+		DDA3937_RS15055	0.49	+1.1
3,454,585	+		DDA3937_RS15055	0.49	-0.6
3,454,585	+		DDA3937_RS15055	0.49	+0.8
3,454,585	+		DDA3937_RS15055	0.49	-0.7
3,454,585	+		DDA3937_RS15055	0.49	-0.1
3,454,585	+		DDA3937_RS15055	0.49	-1.9
3,454,585	+		DDA3937_RS15055	0.49	+0.3
3,454,585	+		DDA3937_RS15055	0.49	-0.9
3,454,586	-		DDA3937_RS15055	0.49	-0.3
3,454,586	-		DDA3937_RS15055	0.49	-0.1
3,454,586	-		DDA3937_RS15055	0.49	-1.1
3,454,586	-		DDA3937_RS15055	0.49	-0.7
3,454,586	-		DDA3937_RS15055	0.49	+0.9
3,454,586	-		DDA3937_RS15055	0.49	-0.0
3,454,586	-		DDA3937_RS15055	0.49	-0.1
3,454,586	-		DDA3937_RS15055	0.49	+0.1
3,454,586	-		DDA3937_RS15055	0.49	+0.9
3,454,586	-		DDA3937_RS15055	0.49	-0.2
3,454,586	-		DDA3937_RS15055	0.49	+0.3
3,454,586	-		DDA3937_RS15055	0.49	-2.7
3,454,586	-		DDA3937_RS15055	0.49	+0.7
3,454,586	-		DDA3937_RS15055	0.49	+1.2
3,454,586	-		DDA3937_RS15055	0.49	-1.0
3,454,586	-		DDA3937_RS15055	0.49	+0.8
3,454,586	-		DDA3937_RS15055	0.49	-2.0
3,454,586	-		DDA3937_RS15055	0.49	+0.4
3,454,586	-		DDA3937_RS15055	0.49	+2.9
3,454,589	+		DDA3937_RS15055	0.50	+0.1
3,454,590	-		DDA3937_RS15055	0.50	-1.6
3,454,689	+		DDA3937_RS15055	0.57	-1.1
3,454,731	+		DDA3937_RS15055	0.60	+0.1
3,454,731	+		DDA3937_RS15055	0.60	+0.0
3,454,731	+		DDA3937_RS15055	0.60	+2.2
3,454,750	+		DDA3937_RS15055	0.61	+0.4
3,454,750	+		DDA3937_RS15055	0.61	-0.8
3,454,797	+		DDA3937_RS15055	0.65	+1.7
3,454,797	+		DDA3937_RS15055	0.65	+1.2
3,454,797	+		DDA3937_RS15055	0.65	+0.8
3,454,797	+		DDA3937_RS15055	0.65	+0.1
3,454,797	+		DDA3937_RS15055	0.65	+1.4
3,454,798	-		DDA3937_RS15055	0.65	+0.4
3,454,803	+		DDA3937_RS15055	0.65	+1.2
3,454,803	+		DDA3937_RS15055	0.65	+2.2
3,454,804	-		DDA3937_RS15055	0.65	-1.6
3,454,804	-		DDA3937_RS15055	0.65	+1.2
3,454,938	+		DDA3937_RS15055	0.75	+0.4
3,454,954	+		DDA3937_RS15055	0.76	+0.9
3,454,955	-		DDA3937_RS15055	0.76	+1.5
3,454,955	-		DDA3937_RS15055	0.76	+0.7
3,454,955	-		DDA3937_RS15055	0.76	+0.2
3,454,955	-		DDA3937_RS15055	0.76	-0.2
3,454,958	+		DDA3937_RS15055	0.77	-0.0
3,454,960	+		DDA3937_RS15055	0.77	-0.8
3,454,962	+		DDA3937_RS15055	0.77	-0.9
3,454,962	+		DDA3937_RS15055	0.77	+0.5
3,454,962	+		DDA3937_RS15055	0.77	+1.5
3,454,962	+		DDA3937_RS15055	0.77	+0.2
3,454,962	+		DDA3937_RS15055	0.77	+0.2
3,454,962	+		DDA3937_RS15055	0.77	+0.7
3,454,962	+		DDA3937_RS15055	0.77	+1.7
3,454,962	+		DDA3937_RS15055	0.77	+0.5
3,454,962	+		DDA3937_RS15055	0.77	+1.2
3,454,962	+		DDA3937_RS15055	0.77	-0.4
3,454,962	+		DDA3937_RS15055	0.77	+1.1
3,454,962	+		DDA3937_RS15055	0.77	-0.5
3,454,962	+		DDA3937_RS15055	0.77	+1.3
3,454,963	-		DDA3937_RS15055	0.77	+1.7
3,455,014	+		DDA3937_RS15055	0.81	-0.0
3,455,014	+		DDA3937_RS15055	0.81	+1.0
3,455,014	+		DDA3937_RS15055	0.81	+0.4
3,455,014	+		DDA3937_RS15055	0.81	+0.6
3,455,015	-		DDA3937_RS15055	0.81	-0.3
3,455,019	+		DDA3937_RS15055	0.81	-0.3
3,455,019	+		DDA3937_RS15055	0.81	+0.8
3,455,019	+		DDA3937_RS15055	0.81	-0.1
3,455,019	+		DDA3937_RS15055	0.81	-0.1
3,455,020	-		DDA3937_RS15055	0.81	-0.4
3,455,020	-		DDA3937_RS15055	0.81	+0.1
3,455,020	-		DDA3937_RS15055	0.81	-0.4
3,455,020	-		DDA3937_RS15055	0.81	-2.4
3,455,020	-		DDA3937_RS15055	0.81	+0.7
3,455,020	-		DDA3937_RS15055	0.81	-0.5
3,455,020	-		DDA3937_RS15055	0.81	-2.9
3,455,020	-		DDA3937_RS15055	0.81	+0.4
3,455,020	-		DDA3937_RS15055	0.81	-2.2
3,455,020	-		DDA3937_RS15055	0.81	-0.8
3,455,137	+		DDA3937_RS15055	0.90	-3.0
3,455,193	+				-1.1
3,455,193	+				+1.2
3,455,193	+				-0.0
3,455,194	-				-0.9
3,455,265	+				-1.2
3,455,275	+				-3.4
3,455,275	+				+2.1
3,455,275	+				+0.2
3,455,275	+				+0.2
3,455,275	+				+0.7
3,455,275	+				+1.4
3,455,275	+				-0.6
3,455,276	-				+0.5
3,455,276	-				+1.8
3,455,276	-				+0.9
3,455,308	+				-0.4
3,455,313	+				-2.1
3,455,313	+				-1.4
3,455,315	+				-1.7
3,455,321	+				-0.7
3,455,321	+				+0.5
3,455,321	+				-0.7
3,455,321	+				-0.8
3,455,321	+				-0.7
3,455,321	+				-1.3
3,455,321	+				+1.6
3,455,322	-				-1.3
3,455,322	-				-0.9
3,455,322	-				-3.5
3,455,322	-				+1.7
3,455,322	-				-3.1
3,455,322	-				-0.2
3,455,325	+				-0.7
3,455,325	+				-1.2
3,455,326	-				-1.6
3,455,326	-				+0.1
3,455,326	-				-0.4
3,455,326	-				+0.6
3,455,326	-				-2.3
3,455,327	+				-1.8
3,455,342	+				+1.4
3,455,342	+				-0.3
3,455,342	+				-0.1
3,455,342	+				+1.0
3,455,342	+				-0.7
3,455,343	-				-4.0
3,455,343	-				+0.9
3,455,343	-				-0.4
3,455,343	-				+0.4
3,455,343	-				-1.6
3,455,343	-				+1.7
3,455,353	+				+0.5
3,455,353	+				+2.3
3,455,353	+				-0.1
3,455,354	-				+0.5
3,455,354	-				+0.0
3,455,354	-				-0.9
3,455,432	+				-1.9
3,455,443	+				-1.2
3,455,483	+				-2.5
3,455,483	+				+0.0
3,455,484	-				-1.1
3,455,492	+				+0.2
3,455,493	-				-2.6
3,455,493	-				-0.6
3,455,494	+				-1.6
3,455,494	+				-1.0
3,455,495	-				+0.6
3,455,495	-				-1.6
3,455,502	+				+0.8
3,455,502	+				+0.6
3,455,503	-				+1.6
3,455,503	-				+1.4
3,455,503	-				+0.0
3,455,503	-				-2.1
3,455,504	+				+0.5
3,455,505	-				+0.4
3,455,513	+				-0.6
3,455,513	+				-2.2
3,455,523	+				-2.4
3,455,523	+				-1.0
3,455,524	-				-1.9
3,455,577	-				-1.6
3,455,585	+				+0.0
3,455,585	+				-0.4
3,455,586	-				+1.4
3,455,587	+				-0.1
3,455,588	-				-0.7
3,455,588	-				-2.6
3,455,588	-				+0.6
3,455,589	+				-2.7
3,455,600	+				+2.2
3,455,600	+				-2.5
3,455,791	+		DDA3937_RS15060	0.15	-1.0
3,455,879	+		DDA3937_RS15060	0.22	+1.6
3,455,879	+				+2.2
3,455,880	-		DDA3937_RS15060	0.23	+3.1