Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14965

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,432,483	+		DDA3937_RS14960	0.43	+0.3
3,432,584	+		DDA3937_RS14960	0.53	-0.7
3,432,584	+		DDA3937_RS14960	0.53	-1.9
3,432,584	+		DDA3937_RS14960	0.53	+0.4
3,432,584	+		DDA3937_RS14960	0.53	-1.4
3,432,584	+		DDA3937_RS14960	0.53	+2.3
3,432,585	-		DDA3937_RS14960	0.53	-1.0
3,432,676	+		DDA3937_RS14960	0.61	+1.6
3,432,676	+		DDA3937_RS14960	0.61	+0.4
3,432,677	-		DDA3937_RS14960	0.61	-0.2
3,432,677	-		DDA3937_RS14960	0.61	-2.1
3,432,766	-		DDA3937_RS14960	0.69	-2.1
3,432,766	-		DDA3937_RS14960	0.69	-2.3
3,433,005	+				-0.0
3,433,110	+				-1.6
3,433,111	-				+0.5
3,433,143	+				-0.7
3,433,156	+				-2.1
3,433,156	+				+1.6
3,433,157	-				-1.7
3,433,157	-				+1.8
3,433,190	-				-1.2
3,433,190	-				-0.5
3,433,230	-				-1.6
3,433,240	+				-1.3
3,433,241	-				-2.6
3,433,286	+				+2.3
3,433,286	+				-0.7
3,433,286	+				+0.9
3,433,286	+				+1.7
3,433,287	-				-0.2
3,433,287	-				-2.8
3,433,350	+				+0.6
3,433,350	+				-2.7
3,433,380	+				+0.2
3,433,381	-				+2.2
3,433,414	-				+1.3
3,433,505	-		DDA3937_RS14965	0.11	-0.0
3,433,509	+		DDA3937_RS14965	0.12	+0.7
3,433,509	+				+1.6
3,433,573	+		DDA3937_RS14965	0.17	-0.4
3,433,573	+		DDA3937_RS14965	0.17	-0.7
3,433,573	+		DDA3937_RS14965	0.17	-1.4
3,433,573	+		DDA3937_RS14965	0.17	-2.6
3,433,573	+		DDA3937_RS14965	0.17	-2.3
3,433,574	-		DDA3937_RS14965	0.17	+2.1
3,433,574	-		DDA3937_RS14965	0.17	-0.6
3,433,579	+		DDA3937_RS14965	0.17	-1.4
3,433,579	+		DDA3937_RS14965	0.17	-1.9
3,433,579	+		DDA3937_RS14965	0.17	+1.1
3,433,579	+		DDA3937_RS14965	0.17	-2.1
3,433,579	+		DDA3937_RS14965	0.17	+1.0
3,433,579	+		DDA3937_RS14965	0.17	+1.1
3,433,579	+		DDA3937_RS14965	0.17	-0.4
3,433,580	-		DDA3937_RS14965	0.17	-1.2
3,433,580	-		DDA3937_RS14965	0.17	+0.2
3,433,580	-		DDA3937_RS14965	0.17	+1.3
3,433,580	-		DDA3937_RS14965	0.17	-0.7
3,433,692	-		DDA3937_RS14965	0.27	-0.1
3,433,692	-		DDA3937_RS14965	0.27	-1.0
3,433,692	-		DDA3937_RS14965	0.27	-0.0
3,433,692	-		DDA3937_RS14965	0.27	-3.1
3,433,726	+		DDA3937_RS14965	0.29	-1.9
3,433,726	+		DDA3937_RS14965	0.29	-0.0
3,433,726	+		DDA3937_RS14965	0.29	-0.2
3,433,726	+				+0.6
3,433,726	+		DDA3937_RS14965	0.29	+0.6
3,433,727	-		DDA3937_RS14965	0.29	+1.8
3,433,727	-		DDA3937_RS14965	0.29	+0.6
3,433,727	-				-1.0
3,433,727	-		DDA3937_RS14965	0.29	+0.6
3,433,734	+		DDA3937_RS14965	0.30	+1.3
3,433,735	-		DDA3937_RS14965	0.30	-0.2
3,433,737	+		DDA3937_RS14965	0.30	+1.9
3,433,737	+		DDA3937_RS14965	0.30	+0.4
3,433,772	-		DDA3937_RS14965	0.33	-1.0
3,433,772	-		DDA3937_RS14965	0.33	-2.3
3,433,812	-		DDA3937_RS14965	0.36	-0.7
3,433,843	+		DDA3937_RS14965	0.39	-0.0
3,433,843	+		DDA3937_RS14965	0.39	-0.3
3,433,843	+				+1.0
3,433,844	-		DDA3937_RS14965	0.39	+0.4
3,433,930	+		DDA3937_RS14965	0.46	+0.3
3,433,965	-		DDA3937_RS14965	0.49	+0.2
3,434,172	+		DDA3937_RS14965	0.66	-2.3
3,434,184	+		DDA3937_RS14965	0.67	-0.4
3,434,215	+		DDA3937_RS14965	0.70	-0.7
3,434,401	+		DDA3937_RS14965	0.85	-0.0
3,434,433	+		DDA3937_RS14965	0.88	+1.7
3,434,433	+		DDA3937_RS14965	0.88	+1.6
3,434,433	+		DDA3937_RS14965	0.88	-0.0
3,434,455	+		DDA3937_RS14965	0.89	+0.5
3,434,455	+		DDA3937_RS14965	0.89	+1.0
3,434,455	+		DDA3937_RS14965	0.89	+3.3
3,434,455	+		DDA3937_RS14965	0.89	-0.7
3,434,456	-		DDA3937_RS14965	0.89	-0.4
3,434,457	+		DDA3937_RS14965	0.90	-2.3
3,434,457	+		DDA3937_RS14965	0.90	-0.2
3,434,457	+		DDA3937_RS14965	0.90	-1.1
3,434,457	+		DDA3937_RS14965	0.90	-1.4
3,434,457	+		DDA3937_RS14965	0.90	+0.6
3,434,457	+		DDA3937_RS14965	0.90	+1.8
3,434,457	+		DDA3937_RS14965	0.90	+0.2
3,434,457	+		DDA3937_RS14965	0.90	+1.0
3,434,458	-		DDA3937_RS14965	0.90	-1.1
3,434,458	-		DDA3937_RS14965	0.90	-1.7
3,434,458	-		DDA3937_RS14965	0.90	-1.0
3,434,458	-		DDA3937_RS14965	0.90	-1.1
3,434,458	-		DDA3937_RS14965	0.90	-1.4
3,434,524	+				-0.4
3,434,524	+				+1.0
3,434,536	+				+2.0
3,434,536	+				-1.6
3,434,536	+				-0.0
3,434,537	-				-1.6
3,434,537	-				+1.5
3,434,582	-				-3.1
3,434,594	+				+1.5
3,434,594	+				-1.9
3,434,594	+				-1.2
3,434,594	+				+2.5
3,434,594	+				-1.3
3,434,595	-				-2.4
3,434,724	+		DDA3937_RS14970	0.12	+1.9
3,434,724	+		DDA3937_RS14970	0.12	-0.1
3,434,724	+		DDA3937_RS14970	0.12	+0.3
3,434,724	+		DDA3937_RS14970	0.12	-1.0
3,434,724	+		DDA3937_RS14970	0.12	+0.6
3,434,724	+		DDA3937_RS14970	0.12	-1.7
3,434,725	-		DDA3937_RS14970	0.12	-1.4
3,434,725	-		DDA3937_RS14970	0.12	-2.1
3,434,725	-		DDA3937_RS14970	0.12	+1.3
3,434,725	-		DDA3937_RS14970	0.12	-0.3
3,434,725	-		DDA3937_RS14970	0.12	+1.6
3,434,725	-		DDA3937_RS14970	0.12	-2.3
3,434,728	+		DDA3937_RS14970	0.13	-1.2
3,434,756	-		DDA3937_RS14970	0.15	+2.2
3,434,907	+		DDA3937_RS14970	0.30	-0.7
3,434,956	+		DDA3937_RS14970	0.35	+0.5
3,434,956	+		DDA3937_RS14970	0.35	+0.7
3,435,036	+		DDA3937_RS14970	0.43	+0.5
3,435,054	-		DDA3937_RS14970	0.44	-1.6
3,435,097	+		DDA3937_RS14970	0.49	-1.6
3,435,148	+		DDA3937_RS14970	0.54	-2.2
3,435,149	-		DDA3937_RS14970	0.54	-2.0
3,435,263	+		DDA3937_RS14970	0.65	-0.5
3,435,264	-		DDA3937_RS14970	0.65	-1.0
3,435,333	+		DDA3937_RS14970	0.72	+0.7
3,435,414	+		DDA3937_RS14970	0.80	-0.6
3,435,432	+		DDA3937_RS14970	0.81	-0.4
3,435,433	-		DDA3937_RS14970	0.82	-1.0
3,435,433	-		DDA3937_RS14970	0.82	+0.6
3,435,535	+				+0.3
3,435,561	+				+0.1
3,435,562	-				-3.5