Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14050

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,208,639	-		DDA3937_RS14045	0.46	-2.0
3,208,766	+		DDA3937_RS14045	0.60	+0.5
3,208,922	+		DDA3937_RS14045	0.78	-2.0
3,208,941	+		DDA3937_RS14045	0.80	-2.3
3,208,941	+		DDA3937_RS14045	0.80	-0.4
3,209,115	-				-0.9
3,209,167	+				-1.0
3,209,167	+				-0.0
3,209,168	-				-2.3
3,209,168	-				+1.4
3,209,168	-				+0.2
3,209,172	-				-0.6
3,209,266	+				-0.4
3,209,266	+				-1.2
3,209,271	+				-0.8
3,209,271	+				+0.2
3,209,271	+				-1.6
3,209,271	+				+0.9
3,209,271	+				-0.1
3,209,271	+				+0.7
3,209,271	+				+0.5
3,209,271	+				+0.3
3,209,271	+				-2.4
3,209,271	+				-1.2
3,209,271	+				-2.3
3,209,271	+				-1.2
3,209,271	+				+1.0
3,209,271	+				-2.7
3,209,271	+				+0.5
3,209,271	+				-1.7
3,209,271	+				-0.4
3,209,271	+				-3.3
3,209,271	+				-1.2
3,209,271	+				+0.1
3,209,271	+				-2.9
3,209,271	+				+1.4
3,209,271	+				-0.2
3,209,271	+				-0.6
3,209,271	+				+1.4
3,209,271	+				+1.8
3,209,271	+				+0.8
3,209,271	+				-0.2
3,209,271	+				+0.4
3,209,271	+				+1.9
3,209,271	+				+0.3
3,209,272	-				-1.2
3,209,272	-				+1.6
3,209,272	-				+1.4
3,209,272	-				+0.3
3,209,272	-				+0.3
3,209,272	-				-3.1
3,209,272	-				-1.2
3,209,272	-				-1.7
3,209,272	-				-1.2
3,209,272	-				-0.2
3,209,272	-				-2.6
3,209,272	-				+1.2
3,209,272	-				-2.0
3,209,272	-				-0.6
3,209,272	-				-1.3
3,209,272	-				+1.2
3,209,272	-				-2.0
3,209,272	-				-1.2
3,209,272	-				-2.3
3,209,272	-				+0.3
3,209,272	-				-1.1
3,209,272	-				-0.4
3,209,272	-				-0.9
3,209,272	-				+0.5
3,209,272	-				-1.4
3,209,272	-				+0.5
3,209,272	-				+2.0
3,209,272	-				-0.6
3,209,272	-				-0.7
3,209,272	-				-2.0
3,209,272	-				-0.6
3,209,272	-				-0.6
3,209,272	-				+1.0
3,209,272	-				+0.3
3,209,272	-				+0.4
3,209,272	-				-0.1
3,209,272	-				+0.9
3,209,326	+				-2.7
3,209,327	-				+1.6
3,209,345	+				+0.4
3,209,345	+				-1.4
3,209,346	-				+0.3
3,209,346	-				+1.9
3,209,346	-				-2.2
3,209,346	-				-0.4
3,209,378	+				-1.3
3,209,511	+				-0.3
3,209,511	+				-0.2
3,209,511	+				+1.2
3,209,512	-				-0.2
3,209,536	-				-2.2
3,209,558	+				+1.0
3,209,559	-				-1.3
3,209,661	+		DDA3937_RS14050	0.15	+0.3
3,209,743	+		DDA3937_RS14050	0.22	-2.3
3,209,835	+		DDA3937_RS14050	0.30	-1.2
3,209,835	+		DDA3937_RS14050	0.30	-1.5
3,209,835	+		DDA3937_RS14050	0.30	-1.4
3,209,839	+		DDA3937_RS14050	0.31	-1.5
3,209,839	+		DDA3937_RS14050	0.31	-0.2
3,209,839	+		DDA3937_RS14050	0.31	-1.6
3,209,839	+		DDA3937_RS14050	0.31	+0.4
3,209,839	+		DDA3937_RS14050	0.31	+0.4
3,209,840	-		DDA3937_RS14050	0.31	+2.4
3,209,840	-		DDA3937_RS14050	0.31	-1.3
3,209,863	+		DDA3937_RS14050	0.33	-1.7
3,209,863	+		DDA3937_RS14050	0.33	+0.4
3,209,863	+		DDA3937_RS14050	0.33	-0.9
3,209,863	+		DDA3937_RS14050	0.33	-0.5
3,209,863	+		DDA3937_RS14050	0.33	-1.2
3,209,863	+		DDA3937_RS14050	0.33	-1.2
3,209,863	+		DDA3937_RS14050	0.33	-1.2
3,209,864	-		DDA3937_RS14050	0.33	+1.4
3,209,864	-				-0.9
3,209,864	-		DDA3937_RS14050	0.33	+0.9
3,209,864	-		DDA3937_RS14050	0.33	-2.4
3,209,864	-		DDA3937_RS14050	0.33	+0.7
3,209,864	-		DDA3937_RS14050	0.33	-2.4
3,209,864	-		DDA3937_RS14050	0.33	-2.5
3,209,864	-		DDA3937_RS14050	0.33	-0.5
3,209,949	-		DDA3937_RS14050	0.40	+0.5
3,209,982	+		DDA3937_RS14050	0.43	-2.1
3,210,094	+		DDA3937_RS14050	0.52	+1.1
3,210,095	-		DDA3937_RS14050	0.52	-0.6
3,210,095	-		DDA3937_RS14050	0.52	+0.3
3,210,132	+		DDA3937_RS14050	0.56	+0.6
3,210,133	-		DDA3937_RS14050	0.56	-2.5
3,210,273	+		DDA3937_RS14050	0.68	-1.5
3,210,274	-		DDA3937_RS14050	0.68	+1.0
3,210,274	-		DDA3937_RS14050	0.68	+0.1
3,210,304	+		DDA3937_RS14050	0.70	-0.9
3,210,304	+		DDA3937_RS14050	0.70	+0.1
3,210,305	-		DDA3937_RS14050	0.70	-0.4
3,210,305	-		DDA3937_RS14050	0.70	+0.1
3,210,319	+		DDA3937_RS14050	0.71	-0.9
3,210,319	+		DDA3937_RS14050	0.71	-0.2
3,210,319	+		DDA3937_RS14050	0.71	+0.3
3,210,320	-		DDA3937_RS14050	0.72	-0.8
3,210,320	-		DDA3937_RS14050	0.72	+1.7
3,210,320	-		DDA3937_RS14050	0.72	-1.6
3,210,320	-		DDA3937_RS14050	0.72	+1.2
3,210,320	-		DDA3937_RS14050	0.72	-0.6
3,210,340	+		DDA3937_RS14050	0.73	+0.3
3,210,340	+		DDA3937_RS14050	0.73	+2.1
3,210,341	-		DDA3937_RS14050	0.73	-1.6
3,210,341	-		DDA3937_RS14050	0.73	+0.0
3,210,361	+		DDA3937_RS14050	0.75	-1.5
3,210,361	+		DDA3937_RS14050	0.75	+2.4
3,210,362	-		DDA3937_RS14050	0.75	+1.3
3,210,396	-		DDA3937_RS14050	0.78	+2.0
3,210,525	+		DDA3937_RS14050	0.89	+0.1
3,210,565	-				+1.9
3,210,666	-				+1.1
3,210,666	-				-1.3
3,210,734	+				+0.6
3,210,741	+				+1.0
3,210,741	+				-0.8
3,210,754	-				-1.7
3,210,783	+				-1.6
3,210,810	+				-0.9
3,210,810	+				-0.3
3,210,952	+		DDA3937_RS14055	0.23	+0.3
3,211,078	+		DDA3937_RS14055	0.39	-1.5
3,211,078	+		DDA3937_RS14055	0.39	-0.6
3,211,079	-		DDA3937_RS14055	0.39	-0.1
3,211,079	-		DDA3937_RS14055	0.39	-0.7
3,211,087	+		DDA3937_RS14055	0.40	-1.8
3,211,087	+		DDA3937_RS14055	0.40	+0.9
3,211,087	+		DDA3937_RS14055	0.40	-1.8
3,211,087	+		DDA3937_RS14055	0.40	-2.7
3,211,087	+		DDA3937_RS14055	0.40	-0.2
3,211,087	+		DDA3937_RS14055	0.40	+1.3
3,211,087	+		DDA3937_RS14055	0.40	-1.3
3,211,088	-		DDA3937_RS14055	0.41	-0.7
3,211,088	-		DDA3937_RS14055	0.41	-1.2
3,211,088	-		DDA3937_RS14055	0.41	-2.6
3,211,091	+		DDA3937_RS14055	0.41	+0.1
3,211,092	-		DDA3937_RS14055	0.41	-1.4
3,211,176	+		DDA3937_RS14055	0.52	-1.4
3,211,202	+		DDA3937_RS14055	0.55	+1.0
3,211,202	+		DDA3937_RS14055	0.55	-2.4
3,211,203	-		DDA3937_RS14055	0.55	+1.2
3,211,247	+		DDA3937_RS14055	0.61	+1.6
3,211,247	+		DDA3937_RS14055	0.61	+1.4
3,211,247	+		DDA3937_RS14055	0.61	+0.7
3,211,247	+		DDA3937_RS14055	0.61	-3.0
3,211,248	-		DDA3937_RS14055	0.61	+0.6
3,211,268	+		DDA3937_RS14055	0.64	-2.3
3,211,269	-		DDA3937_RS14055	0.64	+1.8
3,211,430	-		DDA3937_RS14055	0.85	+1.4
3,211,430	-		DDA3937_RS14055	0.85	-2.0
3,211,430	-		DDA3937_RS14055	0.85	+0.3
3,211,430	-		DDA3937_RS14055	0.85	-1.8
3,211,517	+				-2.6
3,211,517	+				-0.7
3,211,517	+				+1.1
3,211,517	+				-0.6
3,211,517	+				+2.2
3,211,518	-				+0.3
3,211,518	-				-0.2
3,211,587	+				+0.4
3,211,588	-				-1.2
3,211,594	+				+0.7
3,211,594	+				+2.0
3,211,595	-				-0.6
3,211,595	-				-2.6
3,211,595	-				+1.7