Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13680

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,113,530	+				+1.4
3,113,531	-				+0.6
3,113,598	+				-1.1
3,113,598	+				-1.3
3,113,789	+		DDA3937_RS13675	0.25	+1.2
3,113,789	+		DDA3937_RS13675	0.25	-1.9
3,113,790	-		DDA3937_RS13675	0.25	-0.1
3,113,880	+		DDA3937_RS13675	0.37	-3.3
3,113,880	+		DDA3937_RS13675	0.37	-1.5
3,113,882	+		DDA3937_RS13675	0.37	+1.1
3,113,883	-		DDA3937_RS13675	0.38	-0.2
3,113,883	-		DDA3937_RS13675	0.38	+0.4
3,113,883	-		DDA3937_RS13675	0.38	+1.7
3,114,007	+		DDA3937_RS13675	0.54	+0.5
3,114,007	+		DDA3937_RS13675	0.54	+0.8
3,114,036	+		DDA3937_RS13675	0.58	+0.6
3,114,036	+		DDA3937_RS13675	0.58	+0.6
3,114,037	-		DDA3937_RS13675	0.58	-0.6
3,114,037	-		DDA3937_RS13675	0.58	-3.8
3,114,040	+		DDA3937_RS13675	0.58	-1.1
3,114,040	+		DDA3937_RS13675	0.58	+0.3
3,114,040	+		DDA3937_RS13675	0.58	-1.5
3,114,040	+				+1.4
3,114,041	-				-0.2
3,114,043	+		DDA3937_RS13675	0.59	+0.2
3,114,043	+		DDA3937_RS13675	0.59	+0.3
3,114,043	+		DDA3937_RS13675	0.59	+0.1
3,114,044	-		DDA3937_RS13675	0.59	+0.7
3,114,044	-		DDA3937_RS13675	0.59	-0.2
3,114,044	-		DDA3937_RS13675	0.59	-0.4
3,114,210	-		DDA3937_RS13675	0.81	-0.3
3,114,210	-		DDA3937_RS13675	0.81	+0.2
3,114,254	-		DDA3937_RS13675	0.87	+1.2
3,114,254	-		DDA3937_RS13675	0.87	-0.6
3,114,296	-				+1.4
3,114,296	-				+0.3
3,114,366	+				+1.4
3,114,366	+				-2.2
3,114,367	-				+0.7
3,114,422	+				+0.9
3,114,423	-				-1.2
3,114,606	+				-0.0
3,114,606	+				+0.0
3,114,607	-				+0.4
3,114,607	-				-2.2
3,114,614	+				+0.2
3,114,615	-				+0.5
3,114,615	-				-0.8
3,114,629	+				+1.4
3,114,629	+				-0.4
3,114,629	+				+1.2
3,114,629	+				+1.0
3,114,629	+				-0.9
3,114,629	+				+0.4
3,114,630	-				-2.3
3,114,630	-				+2.6
3,114,630	-				+0.6
3,114,669	+				-0.2
3,114,670	-				+0.5
3,114,670	-				-1.6
3,114,710	+		DDA3937_RS13680	0.10	+0.9
3,114,711	-		DDA3937_RS13680	0.11	-0.1
3,114,761	-		DDA3937_RS13680	0.12	-2.1
3,114,811	+		DDA3937_RS13680	0.13	-1.4
3,114,829	-		DDA3937_RS13680	0.14	+1.4
3,114,837	+		DDA3937_RS13680	0.14	-0.0
3,114,837	+		DDA3937_RS13680	0.14	+0.6
3,114,837	+		DDA3937_RS13680	0.14	-2.6
3,114,838	-		DDA3937_RS13680	0.14	+0.4
3,114,838	-		DDA3937_RS13680	0.14	+0.6
3,114,838	-		DDA3937_RS13680	0.14	-1.6
3,114,838	-		DDA3937_RS13680	0.14	+0.3
3,114,929	+		DDA3937_RS13680	0.17	+1.8
3,114,929	+		DDA3937_RS13680	0.17	+0.9
3,114,941	+		DDA3937_RS13680	0.17	-3.3
3,114,941	+		DDA3937_RS13680	0.17	-0.9
3,114,941	+		DDA3937_RS13680	0.17	-1.4
3,114,941	+		DDA3937_RS13680	0.17	-2.3
3,114,941	+		DDA3937_RS13680	0.17	-2.5
3,114,941	+		DDA3937_RS13680	0.17	-2.5
3,114,942	-		DDA3937_RS13680	0.17	-1.0
3,114,942	-		DDA3937_RS13680	0.17	-3.5
3,114,943	+		DDA3937_RS13680	0.17	-2.3
3,114,944	-		DDA3937_RS13680	0.17	-0.9
3,115,057	+		DDA3937_RS13680	0.21	-1.6
3,115,120	+		DDA3937_RS13680	0.23	+0.1
3,115,121	-		DDA3937_RS13680	0.23	+1.7
3,115,121	-		DDA3937_RS13680	0.23	-0.8
3,115,121	-		DDA3937_RS13680	0.23	-1.2
3,115,153	+		DDA3937_RS13680	0.24	+1.2
3,115,153	+		DDA3937_RS13680	0.24	+1.4
3,115,154	-		DDA3937_RS13680	0.24	+0.4
3,115,247	+		DDA3937_RS13680	0.26	-3.2
3,115,248	-		DDA3937_RS13680	0.26	-0.4
3,115,248	-		DDA3937_RS13680	0.26	-0.3
3,115,248	-		DDA3937_RS13680	0.26	-1.2
3,115,295	+		DDA3937_RS13680	0.28	+0.6
3,115,308	+		DDA3937_RS13680	0.28	-1.2
3,115,392	-		DDA3937_RS13680	0.31	-1.1
3,115,487	+		DDA3937_RS13680	0.33	+0.8
3,115,487	+		DDA3937_RS13680	0.33	+1.8
3,115,488	-		DDA3937_RS13680	0.34	-0.9
3,115,494	+		DDA3937_RS13680	0.34	-1.2
3,115,494	+		DDA3937_RS13680	0.34	-1.2
3,115,494	+				+1.7
3,115,494	+		DDA3937_RS13680	0.34	-4.4
3,115,494	+		DDA3937_RS13680	0.34	-0.2
3,115,494	+		DDA3937_RS13680	0.34	-0.5
3,115,494	+		DDA3937_RS13680	0.34	-2.2
3,115,495	-		DDA3937_RS13680	0.34	-2.8
3,115,495	-		DDA3937_RS13680	0.34	-3.1
3,115,500	+		DDA3937_RS13680	0.34	-2.2
3,115,500	+		DDA3937_RS13680	0.34	-1.6
3,115,500	+		DDA3937_RS13680	0.34	-2.5
3,115,501	-		DDA3937_RS13680	0.34	-1.1
3,115,501	-		DDA3937_RS13680	0.34	-1.2
3,115,501	-		DDA3937_RS13680	0.34	+1.2
3,115,501	-		DDA3937_RS13680	0.34	+2.2
3,115,501	-		DDA3937_RS13680	0.34	-0.4
3,115,501	-		DDA3937_RS13680	0.34	+0.0
3,115,501	-		DDA3937_RS13680	0.34	-1.1
3,115,501	-		DDA3937_RS13680	0.34	+1.6
3,115,501	-		DDA3937_RS13680	0.34	-0.4
3,115,612	+		DDA3937_RS13680	0.37	-1.2
3,115,612	+		DDA3937_RS13680	0.37	-0.6
3,115,612	+		DDA3937_RS13680	0.37	-0.9
3,115,612	+		DDA3937_RS13680	0.37	-1.8
3,115,612	+		DDA3937_RS13680	0.37	-2.3
3,115,613	-		DDA3937_RS13680	0.37	-2.2
3,115,613	-		DDA3937_RS13680	0.37	+1.4
3,115,724	+		DDA3937_RS13680	0.40	-0.9
3,115,734	+		DDA3937_RS13680	0.41	-1.6
3,115,734	+		DDA3937_RS13680	0.41	-1.2
3,115,734	+		DDA3937_RS13680	0.41	+3.8
3,115,735	-		DDA3937_RS13680	0.41	-0.1
3,115,735	-		DDA3937_RS13680	0.41	-1.9
3,115,735	-		DDA3937_RS13680	0.41	+1.1
3,115,872	+		DDA3937_RS13680	0.45	-0.1
3,115,906	+		DDA3937_RS13680	0.46	-2.4
3,115,907	-		DDA3937_RS13680	0.46	-0.9
3,115,907	-		DDA3937_RS13680	0.46	-2.8
3,115,941	+		DDA3937_RS13680	0.47	-3.0
3,115,941	+		DDA3937_RS13680	0.47	+0.1
3,115,941	+				-0.2
3,115,942	-		DDA3937_RS13680	0.47	-1.6
3,115,963	+		DDA3937_RS13680	0.48	+1.2
3,116,036	+		DDA3937_RS13680	0.50	-1.9
3,116,036	+		DDA3937_RS13680	0.50	-0.8
3,116,037	-		DDA3937_RS13680	0.50	-1.8
3,116,037	-		DDA3937_RS13680	0.50	-1.4
3,116,038	+		DDA3937_RS13680	0.50	+1.9
3,116,057	+		DDA3937_RS13680	0.50	+1.9
3,116,085	+		DDA3937_RS13680	0.51	+0.7
3,116,100	+		DDA3937_RS13680	0.52	-1.7
3,116,153	-		DDA3937_RS13680	0.53	-2.4
3,116,208	-		DDA3937_RS13680	0.55	-1.8
3,116,225	-		DDA3937_RS13680	0.55	-1.4
3,116,225	-		DDA3937_RS13680	0.55	+1.5
3,116,245	-		DDA3937_RS13680	0.56	+0.3
3,116,277	+		DDA3937_RS13680	0.57	+0.9
3,116,278	-		DDA3937_RS13680	0.57	+0.8
3,116,286	+		DDA3937_RS13680	0.57	-0.8
3,116,286	+		DDA3937_RS13680	0.57	+1.0
3,116,286	+		DDA3937_RS13680	0.57	+1.1
3,116,286	+		DDA3937_RS13680	0.57	-2.1
3,116,287	-		DDA3937_RS13680	0.57	-0.6
3,116,287	-		DDA3937_RS13680	0.57	-1.6
3,116,287	-		DDA3937_RS13680	0.57	-2.6
3,116,565	+		DDA3937_RS13680	0.65	-0.2
3,116,566	-		DDA3937_RS13680	0.65	-1.3
3,116,566	-				-0.6
3,116,566	-		DDA3937_RS13680	0.65	+0.7
3,116,586	+		DDA3937_RS13680	0.66	-1.4
3,116,587	-		DDA3937_RS13680	0.66	+0.1
3,116,758	+		DDA3937_RS13680	0.71	-0.2
3,116,759	-		DDA3937_RS13680	0.71	-2.5
3,116,858	+		DDA3937_RS13680	0.74	-0.4
3,116,859	-		DDA3937_RS13680	0.74	+0.1
3,116,859	-		DDA3937_RS13680	0.74	-0.6
3,117,004	+		DDA3937_RS13680	0.78	-2.3
3,117,004	+		DDA3937_RS13680	0.78	+1.4
3,117,005	-		DDA3937_RS13680	0.78	-0.3
3,117,005	-		DDA3937_RS13680	0.78	-0.3
3,117,006	+		DDA3937_RS13680	0.78	-0.9
3,117,006	+		DDA3937_RS13680	0.78	-1.8
3,117,007	-		DDA3937_RS13680	0.78	-0.6
3,117,019	+		DDA3937_RS13680	0.79	-0.7
3,117,052	+		DDA3937_RS13680	0.80	+0.7
3,117,052	+		DDA3937_RS13680	0.80	+0.8
3,117,052	+		DDA3937_RS13680	0.80	+1.0
3,117,053	-		DDA3937_RS13680	0.80	-1.2
3,117,053	-		DDA3937_RS13680	0.80	-1.8
3,117,053	-		DDA3937_RS13680	0.80	-0.2
3,117,053	-		DDA3937_RS13680	0.80	-1.6
3,117,053	-		DDA3937_RS13680	0.80	-0.9
3,117,056	+		DDA3937_RS13680	0.80	+1.0
3,117,056	+		DDA3937_RS13680	0.80	+0.8
3,117,057	-		DDA3937_RS13680	0.80	-0.5
3,117,057	-		DDA3937_RS13680	0.80	+3.3
3,117,057	-		DDA3937_RS13680	0.80	-0.7
3,117,096	+		DDA3937_RS13680	0.81	-0.0
3,117,096	+		DDA3937_RS13680	0.81	-0.1
3,117,096	+				+0.8
3,117,096	+		DDA3937_RS13680	0.81	-0.6
3,117,096	+		DDA3937_RS13680	0.81	-0.2
3,117,096	+		DDA3937_RS13680	0.81	+0.4
3,117,096	+		DDA3937_RS13680	0.81	-0.4
3,117,097	-		DDA3937_RS13680	0.81	+1.6
3,117,097	-		DDA3937_RS13680	0.81	-2.1
3,117,097	-		DDA3937_RS13680	0.81	-1.4
3,117,097	-		DDA3937_RS13680	0.81	-1.3
3,117,097	-				+0.1
3,117,097	-		DDA3937_RS13680	0.81	-3.8
3,117,097	-		DDA3937_RS13680	0.81	-0.9
3,117,109	+		DDA3937_RS13680	0.81	+0.4
3,117,109	+		DDA3937_RS13680	0.81	-1.8
3,117,110	-		DDA3937_RS13680	0.82	-0.9
3,117,117	+		DDA3937_RS13680	0.82	-0.5
3,117,117	+		DDA3937_RS13680	0.82	-0.1
3,117,117	+		DDA3937_RS13680	0.82	-0.1
3,117,117	+		DDA3937_RS13680	0.82	+2.2
3,117,118	-		DDA3937_RS13680	0.82	-1.9
3,117,174	+		DDA3937_RS13680	0.83	+0.6
3,117,261	-		DDA3937_RS13680	0.86	-0.0
3,117,309	+		DDA3937_RS13680	0.87	+2.2
3,117,337	+		DDA3937_RS13680	0.88	-2.2
3,117,338	-		DDA3937_RS13680	0.88	-0.7
3,117,395	+		DDA3937_RS13680	0.90	+1.1
3,117,395	+		DDA3937_RS13680	0.90	-0.8
3,117,395	+		DDA3937_RS13680	0.90	-1.4
3,117,395	+		DDA3937_RS13680	0.90	-2.4
3,117,395	+				-0.2
3,117,395	+		DDA3937_RS13680	0.90	-3.2
3,117,395	+		DDA3937_RS13680	0.90	-0.3
3,117,396	-				-1.8
3,117,396	-				-0.3
3,117,396	-				-3.4
3,117,396	-				+1.6
3,117,396	-				-0.2
3,117,396	-				-0.6
3,117,396	-				+0.8
3,117,431	+				-1.1
3,117,440	+				-1.4
3,117,441	+				+2.9
3,117,442	-				-0.5
3,117,442	-				-0.2
3,117,466	+				-1.6
3,117,496	+				+0.7
3,117,496	+				-1.6
3,117,496	+				-1.7
3,117,497	-				-0.9
3,117,497	-				-1.2
3,117,542	+				-0.9
3,117,542	+				-1.2
3,117,542	+				+1.2
3,117,542	+				-1.4
3,117,543	-				-2.9
3,117,543	-				-1.8
3,117,543	-				-0.9
3,117,668	+				-0.2
3,117,773	+				-1.4
3,117,773	+				+1.0
3,117,774	-				-2.3
3,117,801	+				+0.1
3,117,801	+				+2.6
3,117,801	+				+0.1
3,117,802	-				-0.5
3,117,825	+				+0.7
3,117,825	+				-2.2
3,117,825	+				-0.6
3,117,825	+				-2.2
3,117,907	+		DDA3937_RS13685	0.15	-2.2
3,117,907	+		DDA3937_RS13685	0.15	-3.1
3,117,907	+		DDA3937_RS13685	0.15	+1.8
3,117,907	+		DDA3937_RS13685	0.15	+0.2
3,117,907	+		DDA3937_RS13685	0.15	-0.4
3,117,907	+		DDA3937_RS13685	0.15	-0.8
3,117,907	+		DDA3937_RS13685	0.15	-1.9
3,117,907	+		DDA3937_RS13685	0.15	-1.8
3,117,907	+		DDA3937_RS13685	0.15	-0.1
3,117,907	+		DDA3937_RS13685	0.15	-0.4
3,117,907	+		DDA3937_RS13685	0.15	-0.2
3,117,907	+				+0.8
3,117,908	-		DDA3937_RS13685	0.15	-2.2
3,117,908	-		DDA3937_RS13685	0.15	-2.2
3,117,908	-		DDA3937_RS13685	0.15	-2.5
3,117,908	-		DDA3937_RS13685	0.15	-0.6
3,117,908	-		DDA3937_RS13685	0.15	-1.1
3,117,908	-		DDA3937_RS13685	0.15	-1.6
3,117,908	-		DDA3937_RS13685	0.15	+1.2
3,117,908	-		DDA3937_RS13685	0.15	+2.7
3,117,908	-		DDA3937_RS13685	0.15	-0.6
3,117,908	-		DDA3937_RS13685	0.15	-1.4
3,117,908	-		DDA3937_RS13685	0.15	-2.9
3,117,908	-		DDA3937_RS13685	0.15	-1.8
3,117,908	-		DDA3937_RS13685	0.15	-3.5
3,117,908	-		DDA3937_RS13685	0.15	-4.1
3,117,908	-		DDA3937_RS13685	0.15	-0.9
3,117,908	-		DDA3937_RS13685	0.15	+0.5
3,117,909	+		DDA3937_RS13685	0.15	-0.0
3,117,909	+		DDA3937_RS13685	0.15	-0.5
3,117,909	+		DDA3937_RS13685	0.15	-2.2
3,117,909	+		DDA3937_RS13685	0.15	-2.5
3,117,910	-		DDA3937_RS13685	0.15	-1.1
3,117,948	-		DDA3937_RS13685	0.18	-0.2
3,117,948	-		DDA3937_RS13685	0.18	-0.4
3,117,988	-		DDA3937_RS13685	0.22	+1.0
3,118,215	-		DDA3937_RS13685	0.41	-1.6
3,118,271	+		DDA3937_RS13685	0.45	-3.5
3,118,272	-		DDA3937_RS13685	0.45	-2.0
3,118,308	+				+1.4
3,118,309	-		DDA3937_RS13685	0.48	-4.9
3,118,347	-		DDA3937_RS13685	0.52	+1.4
3,118,372	-		DDA3937_RS13685	0.54	-1.6
3,118,372	-		DDA3937_RS13685	0.54	-0.0
3,118,390	+		DDA3937_RS13685	0.55	+0.4
3,118,391	-		DDA3937_RS13685	0.55	+1.2
3,118,560	-		DDA3937_RS13685	0.70	-3.0
3,118,589	+		DDA3937_RS13685	0.72	-3.0
3,118,590	-		DDA3937_RS13685	0.72	+1.0
3,118,611	+		DDA3937_RS13685	0.74	-1.2
3,118,612	-		DDA3937_RS13685	0.74	+0.1
3,118,641	+		DDA3937_RS13685	0.76	+0.1
3,118,642	-		DDA3937_RS13685	0.76	+1.6
3,118,642	-		DDA3937_RS13685	0.76	-1.2
3,118,642	-		DDA3937_RS13685	0.76	-1.6
3,118,670	+		DDA3937_RS13685	0.79	-0.4
3,118,670	+		DDA3937_RS13685	0.79	+2.2
3,118,671	-		DDA3937_RS13685	0.79	-1.2
3,118,671	-		DDA3937_RS13685	0.79	+0.8
3,118,671	-		DDA3937_RS13685	0.79	-1.8
3,118,671	-		DDA3937_RS13685	0.79	-0.8