Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13610

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,098,544	+		DDA3937_RS13605	0.31	-0.8
3,098,544	+		DDA3937_RS13605	0.31	-0.6
3,098,544	+		DDA3937_RS13605	0.31	+0.1
3,098,544	+		DDA3937_RS13605	0.31	-0.6
3,098,544	+		DDA3937_RS13605	0.31	-1.4
3,098,545	-		DDA3937_RS13605	0.31	-1.8
3,098,545	-		DDA3937_RS13605	0.31	+1.7
3,098,545	-		DDA3937_RS13605	0.31	-3.1
3,098,545	-		DDA3937_RS13605	0.31	+0.6
3,098,545	-		DDA3937_RS13605	0.31	-0.4
3,098,548	+		DDA3937_RS13605	0.31	-1.4
3,098,548	+		DDA3937_RS13605	0.31	+2.0
3,098,548	+		DDA3937_RS13605	0.31	-1.2
3,098,548	+		DDA3937_RS13605	0.31	-0.2
3,098,549	-		DDA3937_RS13605	0.31	+3.2
3,098,549	-		DDA3937_RS13605	0.31	-0.4
3,098,549	-		DDA3937_RS13605	0.31	-3.5
3,098,632	+		DDA3937_RS13605	0.38	-1.4
3,098,665	+		DDA3937_RS13605	0.41	-1.5
3,098,665	+		DDA3937_RS13605	0.41	-1.5
3,098,697	+		DDA3937_RS13605	0.43	-0.9
3,098,698	-		DDA3937_RS13605	0.43	-1.2
3,098,703	+		DDA3937_RS13605	0.43	-0.2
3,098,704	-		DDA3937_RS13605	0.44	-1.6
3,098,704	-		DDA3937_RS13605	0.44	-2.2
3,098,711	-		DDA3937_RS13605	0.44	-0.2
3,098,764	-		DDA3937_RS13605	0.48	-0.7
3,098,841	+		DDA3937_RS13605	0.54	-1.2
3,098,841	+		DDA3937_RS13605	0.54	-1.2
3,098,842	-		DDA3937_RS13605	0.54	-1.8
3,098,842	-		DDA3937_RS13605	0.54	-2.6
3,098,842	-		DDA3937_RS13605	0.54	-0.6
3,098,842	-		DDA3937_RS13605	0.54	+1.2
3,098,886	+		DDA3937_RS13605	0.58	+0.8
3,098,886	+		DDA3937_RS13605	0.58	-1.2
3,098,903	+		DDA3937_RS13605	0.59	+1.2
3,098,908	-		DDA3937_RS13605	0.59	-0.6
3,098,908	-		DDA3937_RS13605	0.59	-0.2
3,098,908	-				-0.2
3,098,913	+		DDA3937_RS13605	0.60	-1.9
3,099,070	+		DDA3937_RS13605	0.72	-2.1
3,099,071	-		DDA3937_RS13605	0.72	-2.1
3,099,071	-		DDA3937_RS13605	0.72	-0.7
3,099,071	-		DDA3937_RS13605	0.72	-0.3
3,099,085	-		DDA3937_RS13605	0.73	-2.4
3,099,085	-		DDA3937_RS13605	0.73	+0.1
3,099,140	-		DDA3937_RS13605	0.78	-0.2
3,099,140	-		DDA3937_RS13605	0.78	-0.9
3,099,140	-		DDA3937_RS13605	0.78	-2.7
3,099,141	+		DDA3937_RS13605	0.78	-1.6
3,099,141	+		DDA3937_RS13605	0.78	-1.8
3,099,141	+		DDA3937_RS13605	0.78	-0.2
3,099,141	+		DDA3937_RS13605	0.78	+1.4
3,099,142	-		DDA3937_RS13605	0.78	+0.2
3,099,142	-		DDA3937_RS13605	0.78	-0.9
3,099,142	-		DDA3937_RS13605	0.78	-0.6
3,099,187	-		DDA3937_RS13605	0.81	-1.9
3,099,306	+				+0.1
3,099,306	+				-1.6
3,099,306	+				+0.4
3,099,307	-				-0.1
3,099,337	+				-2.5
3,099,338	-				-0.2
3,099,352	+				-2.6
3,099,352	+				+0.1
3,099,352	+				+1.6
3,099,352	+				+1.4
3,099,353	-				-0.6
3,099,353	-				+1.0
3,099,368	-				-2.3
3,099,414	+				+1.4
3,099,415	-				+0.6
3,099,421	-				+0.9
3,099,497	+				-1.1
3,099,497	+				-3.2
3,099,498	-				-3.1
3,099,498	-				+1.7
3,099,547	-				+0.9
3,099,631	-		DDA3937_RS13610	0.11	+1.0
3,099,631	-		DDA3937_RS13610	0.11	-0.5
3,099,640	+		DDA3937_RS13610	0.11	-1.6
3,099,640	+		DDA3937_RS13610	0.11	-2.5
3,099,640	+		DDA3937_RS13610	0.11	-1.2
3,099,657	+		DDA3937_RS13610	0.13	-1.6
3,099,657	+		DDA3937_RS13610	0.13	-1.5
3,099,658	-		DDA3937_RS13610	0.13	-1.7
3,099,730	-		DDA3937_RS13610	0.18	+1.4
3,099,813	-		DDA3937_RS13610	0.25	+0.2
3,099,813	-				+1.4
3,099,816	+		DDA3937_RS13610	0.25	-1.6
3,099,816	+		DDA3937_RS13610	0.25	-0.2
3,099,816	+		DDA3937_RS13610	0.25	+1.4
3,099,816	+		DDA3937_RS13610	0.25	-2.8
3,099,816	+				-0.6
3,099,829	-		DDA3937_RS13610	0.26	-1.7
3,099,829	-		DDA3937_RS13610	0.26	+0.5
3,099,829	-		DDA3937_RS13610	0.26	+0.1
3,099,830	+		DDA3937_RS13610	0.26	-1.3
3,099,840	+		DDA3937_RS13610	0.27	-1.4
3,099,840	+		DDA3937_RS13610	0.27	-0.7
3,099,844	+		DDA3937_RS13610	0.27	-1.8
3,099,845	-		DDA3937_RS13610	0.27	-1.3
3,099,845	-		DDA3937_RS13610	0.27	-0.1
3,099,845	-		DDA3937_RS13610	0.27	+0.2
3,100,003	-				+0.4
3,100,003	-		DDA3937_RS13610	0.40	-1.1
3,100,003	-		DDA3937_RS13610	0.40	-2.3
3,100,007	-				-0.6
3,100,158	+		DDA3937_RS13610	0.52	+0.9
3,100,178	+		DDA3937_RS13610	0.53	-1.8
3,100,178	+		DDA3937_RS13610	0.53	-1.4
3,100,178	+		DDA3937_RS13610	0.53	+0.8
3,100,179	-		DDA3937_RS13610	0.53	-0.2
3,100,201	-		DDA3937_RS13610	0.55	+1.4
3,100,215	-		DDA3937_RS13610	0.56	-1.6
3,100,215	-		DDA3937_RS13610	0.56	-0.4
3,100,282	-		DDA3937_RS13610	0.62	+0.8
3,100,282	-		DDA3937_RS13610	0.62	+2.2
3,100,301	+		DDA3937_RS13610	0.63	-1.9
3,100,301	+		DDA3937_RS13610	0.63	-1.4
3,100,346	+		DDA3937_RS13610	0.67	+1.7
3,100,346	+		DDA3937_RS13610	0.67	-3.1
3,100,352	+		DDA3937_RS13610	0.67	-0.7
3,100,367	+		DDA3937_RS13610	0.68	-2.1
3,100,368	-		DDA3937_RS13610	0.68	-2.7
3,100,420	+		DDA3937_RS13610	0.72	-2.0
3,100,451	+		DDA3937_RS13610	0.75	-1.4
3,100,452	-		DDA3937_RS13610	0.75	-2.1
3,100,513	-		DDA3937_RS13610	0.80	-3.0
3,100,514	+		DDA3937_RS13610	0.80	-1.6
3,100,515	-		DDA3937_RS13610	0.80	+1.2
3,100,525	-		DDA3937_RS13610	0.81	+1.0
3,100,525	-		DDA3937_RS13610	0.81	+0.5
3,100,526	+		DDA3937_RS13610	0.81	-2.1
3,100,526	+		DDA3937_RS13610	0.81	-1.2
3,100,526	+		DDA3937_RS13610	0.81	-1.6
3,100,526	+		DDA3937_RS13610	0.81	-0.3
3,100,527	-		DDA3937_RS13610	0.81	-2.7
3,100,527	-		DDA3937_RS13610	0.81	-0.9
3,100,527	-		DDA3937_RS13610	0.81	-0.9
3,100,602	+		DDA3937_RS13610	0.87	-0.9
3,100,603	-		DDA3937_RS13610	0.87	-2.8
3,100,649	+				+0.1
3,100,653	+				-1.7
3,100,654	-				-1.9
3,100,713	+				-2.8
3,100,714	-				+1.9
3,100,762	+				-2.1
3,100,804	+				-1.8
3,100,827	-				-0.2
3,100,827	-				+0.5
3,100,933	-				+0.9
3,100,935	+				+0.4
3,101,006	+				+1.9
3,101,007	-				+1.7
3,101,008	+				-0.8
3,101,008	+				-0.2
3,101,009	-				-1.4
3,101,009	-				+0.6
3,101,011	+				+3.0
3,101,012	-				-2.2
3,101,025	-				-1.9
3,101,025	-				+2.0
3,101,025	-				-0.6
3,101,069	+				+0.4
3,101,069	+				-1.4
3,101,070	-				-1.8
3,101,071	+				-1.5
3,101,071	+				-1.8
3,101,072	-				+1.5
3,101,143	+				-2.5
3,101,159	+				-0.4
3,101,159	+				-0.3
3,101,194	+				-1.6
3,101,195	-				+0.4
3,101,226	-				-0.6
3,101,322	+				-1.8
3,101,357	-				-1.7
3,101,382	+				+0.4
3,101,383	-				-0.6
3,101,383	-				+0.6
3,101,383	-				+1.6
3,101,385	-				+2.2
3,101,385	-				+2.0
3,101,415	+				+1.5
3,101,427	+				+2.6
3,101,480	-				-1.9
3,101,496	+				-2.0
3,101,496	+				-0.2
3,101,496	+				-1.1
3,101,500	+		DDA3937_RS13615	0.11	+2.3
3,101,501	-		DDA3937_RS13615	0.12	+1.8
3,101,569	+		DDA3937_RS13615	0.33	-1.2
3,101,569	+		DDA3937_RS13615	0.33	-1.6
3,101,570	-		DDA3937_RS13615	0.34	-0.9
3,101,626	-		DDA3937_RS13615	0.52	+2.1
3,101,626	-		DDA3937_RS13615	0.52	-1.9
3,101,626	-		DDA3937_RS13615	0.52	-1.4