Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13605

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,097,146	+				-3.5
3,097,146	+				+0.3
3,097,147	-				-0.2
3,097,147	-				+0.2
3,097,147	-				+0.2
3,097,151	-				-1.4
3,097,151	-				-2.5
3,097,183	-				+1.8
3,097,287	+				-0.6
3,097,287	+				+0.0
3,097,288	-				-2.1
3,097,288	-				-1.9
3,097,315	-				+1.6
3,097,323	+				-1.2
3,097,324	-				+0.3
3,097,325	+				+0.4
3,097,347	+				-1.4
3,097,347	+				-0.1
3,097,348	-				-1.2
3,097,348	-				-0.1
3,097,348	-				+1.6
3,097,376	+				+1.8
3,097,376	+				-1.4
3,097,376	+				+1.9
3,097,376	+				+0.6
3,097,376	+				-0.1
3,097,377	-				+0.3
3,097,377	-				+0.4
3,097,377	-				+1.0
3,097,407	-		DDA3937_RS13600	0.12	-0.6
3,097,407	-		DDA3937_RS13600	0.12	-2.6
3,097,411	+		DDA3937_RS13600	0.13	-1.2
3,097,473	+		DDA3937_RS13600	0.29	-0.3
3,097,474	-		DDA3937_RS13600	0.30	+2.0
3,097,474	-		DDA3937_RS13600	0.30	+1.1
3,097,523	-		DDA3937_RS13600	0.43	-0.8
3,097,523	-		DDA3937_RS13600	0.43	-1.8
3,097,526	-		DDA3937_RS13600	0.43	-2.8
3,097,583	+		DDA3937_RS13600	0.58	-1.2
3,097,587	-		DDA3937_RS13600	0.60	+0.3
3,097,587	-		DDA3937_RS13600	0.60	-2.0
3,097,716	+				-3.6
3,097,768	-				-0.4
3,097,768	-				-1.6
3,097,768	-				-1.2
3,097,768	-				-0.6
3,097,771	-				+0.1
3,097,771	-				+2.5
3,097,813	+				-2.5
3,097,846	+				-1.6
3,097,847	-				-0.6
3,097,849	-				-0.6
3,097,876	+				-1.5
3,097,879	+				-2.1
3,097,880	-				+0.4
3,097,982	+				-1.2
3,097,983	-				-1.3
3,098,012	+				-0.3
3,098,019	+				-0.4
3,098,020	-				-0.8
3,098,043	-				-1.2
3,098,050	+				-2.1
3,098,098	-				+1.3
3,098,114	-				+0.4
3,098,145	+				+0.3
3,098,145	+				-1.1
3,098,146	-				-1.6
3,098,159	-				-1.9
3,098,301	+		DDA3937_RS13605	0.12	+0.5
3,098,351	+		DDA3937_RS13605	0.16	-1.0
3,098,352	-		DDA3937_RS13605	0.16	+0.0
3,098,352	-		DDA3937_RS13605	0.16	-2.2
3,098,361	+		DDA3937_RS13605	0.17	-1.4
3,098,361	+		DDA3937_RS13605	0.17	-1.7
3,098,364	+		DDA3937_RS13605	0.17	-2.1
3,098,364	+		DDA3937_RS13605	0.17	+2.4
3,098,365	-		DDA3937_RS13605	0.17	-0.7
3,098,365	-		DDA3937_RS13605	0.17	-1.4
3,098,389	+		DDA3937_RS13605	0.19	+0.5
3,098,476	+		DDA3937_RS13605	0.26	-0.1
3,098,477	-		DDA3937_RS13605	0.26	-0.9
3,098,544	+		DDA3937_RS13605	0.31	-0.8
3,098,544	+		DDA3937_RS13605	0.31	-0.6
3,098,544	+		DDA3937_RS13605	0.31	+0.1
3,098,544	+		DDA3937_RS13605	0.31	-0.6
3,098,544	+		DDA3937_RS13605	0.31	-1.4
3,098,545	-		DDA3937_RS13605	0.31	-1.8
3,098,545	-		DDA3937_RS13605	0.31	+1.7
3,098,545	-		DDA3937_RS13605	0.31	-3.1
3,098,545	-		DDA3937_RS13605	0.31	+0.6
3,098,545	-		DDA3937_RS13605	0.31	-0.4
3,098,548	+		DDA3937_RS13605	0.31	-1.4
3,098,548	+		DDA3937_RS13605	0.31	+2.0
3,098,548	+		DDA3937_RS13605	0.31	-1.2
3,098,548	+		DDA3937_RS13605	0.31	-0.2
3,098,549	-		DDA3937_RS13605	0.31	+3.2
3,098,549	-		DDA3937_RS13605	0.31	-0.4
3,098,549	-		DDA3937_RS13605	0.31	-3.5
3,098,632	+		DDA3937_RS13605	0.38	-1.4
3,098,665	+		DDA3937_RS13605	0.41	-1.5
3,098,665	+		DDA3937_RS13605	0.41	-1.5
3,098,697	+		DDA3937_RS13605	0.43	-0.9
3,098,698	-		DDA3937_RS13605	0.43	-1.2
3,098,703	+		DDA3937_RS13605	0.43	-0.2
3,098,704	-		DDA3937_RS13605	0.44	-1.6
3,098,704	-		DDA3937_RS13605	0.44	-2.2
3,098,711	-		DDA3937_RS13605	0.44	-0.2
3,098,764	-		DDA3937_RS13605	0.48	-0.7
3,098,841	+		DDA3937_RS13605	0.54	-1.2
3,098,841	+		DDA3937_RS13605	0.54	-1.2
3,098,842	-		DDA3937_RS13605	0.54	-1.8
3,098,842	-		DDA3937_RS13605	0.54	-2.6
3,098,842	-		DDA3937_RS13605	0.54	-0.6
3,098,842	-		DDA3937_RS13605	0.54	+1.2
3,098,886	+		DDA3937_RS13605	0.58	+0.8
3,098,886	+		DDA3937_RS13605	0.58	-1.2
3,098,903	+		DDA3937_RS13605	0.59	+1.2
3,098,908	-		DDA3937_RS13605	0.59	-0.6
3,098,908	-		DDA3937_RS13605	0.59	-0.2
3,098,908	-				-0.2
3,098,913	+		DDA3937_RS13605	0.60	-1.9
3,099,070	+		DDA3937_RS13605	0.72	-2.1
3,099,071	-		DDA3937_RS13605	0.72	-2.1
3,099,071	-		DDA3937_RS13605	0.72	-0.7
3,099,071	-		DDA3937_RS13605	0.72	-0.3
3,099,085	-		DDA3937_RS13605	0.73	-2.4
3,099,085	-		DDA3937_RS13605	0.73	+0.1
3,099,140	-		DDA3937_RS13605	0.78	-0.2
3,099,140	-		DDA3937_RS13605	0.78	-0.9
3,099,140	-		DDA3937_RS13605	0.78	-2.7
3,099,141	+		DDA3937_RS13605	0.78	-1.6
3,099,141	+		DDA3937_RS13605	0.78	-1.8
3,099,141	+		DDA3937_RS13605	0.78	-0.2
3,099,141	+		DDA3937_RS13605	0.78	+1.4
3,099,142	-		DDA3937_RS13605	0.78	+0.2
3,099,142	-		DDA3937_RS13605	0.78	-0.9
3,099,142	-		DDA3937_RS13605	0.78	-0.6
3,099,187	-		DDA3937_RS13605	0.81	-1.9
3,099,306	+				+0.1
3,099,306	+				-1.6
3,099,306	+				+0.4
3,099,307	-				-0.1
3,099,337	+				-2.5
3,099,338	-				-0.2
3,099,352	+				-2.6
3,099,352	+				+0.1
3,099,352	+				+1.6
3,099,352	+				+1.4
3,099,353	-				-0.6
3,099,353	-				+1.0
3,099,368	-				-2.3
3,099,414	+				+1.4
3,099,415	-				+0.6
3,099,421	-				+0.9
3,099,497	+				-1.1
3,099,497	+				-3.2
3,099,498	-				-3.1
3,099,498	-				+1.7
3,099,547	-				+0.9
3,099,631	-		DDA3937_RS13610	0.11	+1.0
3,099,631	-		DDA3937_RS13610	0.11	-0.5
3,099,640	+		DDA3937_RS13610	0.11	-1.6
3,099,640	+		DDA3937_RS13610	0.11	-2.5
3,099,640	+		DDA3937_RS13610	0.11	-1.2
3,099,657	+		DDA3937_RS13610	0.13	-1.6
3,099,657	+		DDA3937_RS13610	0.13	-1.5
3,099,658	-		DDA3937_RS13610	0.13	-1.7
3,099,730	-		DDA3937_RS13610	0.18	+1.4
3,099,813	-		DDA3937_RS13610	0.25	+0.2
3,099,813	-				+1.4
3,099,816	+		DDA3937_RS13610	0.25	-1.6
3,099,816	+		DDA3937_RS13610	0.25	-0.2
3,099,816	+		DDA3937_RS13610	0.25	+1.4
3,099,816	+		DDA3937_RS13610	0.25	-2.8
3,099,816	+				-0.6
3,099,829	-		DDA3937_RS13610	0.26	-1.7
3,099,829	-		DDA3937_RS13610	0.26	+0.5
3,099,829	-		DDA3937_RS13610	0.26	+0.1
3,099,830	+		DDA3937_RS13610	0.26	-1.3
3,099,840	+		DDA3937_RS13610	0.27	-1.4
3,099,840	+		DDA3937_RS13610	0.27	-0.7
3,099,844	+		DDA3937_RS13610	0.27	-1.8
3,099,845	-		DDA3937_RS13610	0.27	-1.3
3,099,845	-		DDA3937_RS13610	0.27	-0.1
3,099,845	-		DDA3937_RS13610	0.27	+0.2
3,100,003	-				+0.4
3,100,003	-		DDA3937_RS13610	0.40	-1.1
3,100,003	-		DDA3937_RS13610	0.40	-2.3
3,100,007	-				-0.6
3,100,158	+		DDA3937_RS13610	0.52	+0.9
3,100,178	+		DDA3937_RS13610	0.53	-1.8
3,100,178	+		DDA3937_RS13610	0.53	-1.4
3,100,178	+		DDA3937_RS13610	0.53	+0.8
3,100,179	-		DDA3937_RS13610	0.53	-0.2
3,100,201	-		DDA3937_RS13610	0.55	+1.4
3,100,215	-		DDA3937_RS13610	0.56	-1.6
3,100,215	-		DDA3937_RS13610	0.56	-0.4
3,100,282	-		DDA3937_RS13610	0.62	+0.8
3,100,282	-		DDA3937_RS13610	0.62	+2.2
3,100,301	+		DDA3937_RS13610	0.63	-1.9
3,100,301	+		DDA3937_RS13610	0.63	-1.4
3,100,346	+		DDA3937_RS13610	0.67	+1.7
3,100,346	+		DDA3937_RS13610	0.67	-3.1
3,100,352	+		DDA3937_RS13610	0.67	-0.7
3,100,367	+		DDA3937_RS13610	0.68	-2.1
3,100,368	-		DDA3937_RS13610	0.68	-2.7
3,100,420	+		DDA3937_RS13610	0.72	-2.0