Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13575

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,091,286	-		DDA3937_RS13570	0.43	-1.7
3,091,286	-		DDA3937_RS13570	0.43	-2.3
3,091,323	+		DDA3937_RS13570	0.46	+0.8
3,091,358	-		DDA3937_RS13570	0.49	-1.1
3,091,379	-		DDA3937_RS13570	0.51	-1.5
3,091,389	+		DDA3937_RS13570	0.52	-2.2
3,091,390	-		DDA3937_RS13570	0.52	-1.0
3,091,399	-		DDA3937_RS13570	0.53	-0.4
3,091,454	-		DDA3937_RS13570	0.57	+0.3
3,091,456	+		DDA3937_RS13570	0.57	-1.2
3,091,457	-		DDA3937_RS13570	0.58	-2.4
3,091,457	-		DDA3937_RS13570	0.58	+1.3
3,091,457	-		DDA3937_RS13570	0.58	+0.3
3,091,478	-		DDA3937_RS13570	0.59	+0.2
3,091,494	+		DDA3937_RS13570	0.61	-1.8
3,091,494	+		DDA3937_RS13570	0.61	-1.4
3,091,494	+		DDA3937_RS13570	0.61	-0.3
3,091,495	-		DDA3937_RS13570	0.61	-0.2
3,091,495	-		DDA3937_RS13570	0.61	+0.1
3,091,495	-		DDA3937_RS13570	0.61	-1.1
3,091,495	-		DDA3937_RS13570	0.61	+1.8
3,091,514	+		DDA3937_RS13570	0.63	-0.8
3,091,514	+		DDA3937_RS13570	0.63	-1.4
3,091,514	+		DDA3937_RS13570	0.63	-3.0
3,091,515	-		DDA3937_RS13570	0.63	-0.7
3,091,515	-		DDA3937_RS13570	0.63	-1.8
3,091,798	+		DDA3937_RS13570	0.87	+0.4
3,091,819	-		DDA3937_RS13570	0.89	-2.8
3,091,970	+				-2.3
3,091,970	+				-0.9
3,091,970	+				-0.2
3,091,970	+				-0.2
3,091,971	-				+2.4
3,091,982	+				-1.6
3,091,982	+				-1.6
3,091,982	+				-0.9
3,091,982	+				+1.4
3,091,983	-				+1.1
3,091,983	-				+2.4
3,091,983	-				-1.8
3,091,995	+				+1.6
3,091,996	-				-0.3
3,092,028	-				-2.1
3,092,047	+				-1.6
3,092,048	-				-1.4
3,092,055	+				+0.1
3,092,067	+				-1.2
3,092,067	+				+1.3
3,092,067	+				-1.2
3,092,068	-				-0.2
3,092,069	+				-0.5
3,092,069	+				-0.6
3,092,071	+				+0.8
3,092,071	+				-0.6
3,092,072	-				+0.4
3,092,072	-				-2.0
3,092,075	+				-2.3
3,092,090	+				+1.7
3,092,090	+				-0.3
3,092,091	-				-2.5
3,092,148	+				+0.7
3,092,148	+				-0.2
3,092,148	+				+0.4
3,092,149	-				-1.2
3,092,149	-				+1.0
3,092,149	-				-0.2
3,092,149	-				-0.5
3,092,150	+				-1.4
3,092,150	+				+0.3
3,092,151	-				+0.6
3,092,151	-				-0.7
3,092,161	+				+0.8
3,092,162	-				-2.4
3,092,162	-				+1.4
3,092,166	+				-0.5
3,092,166	+				-0.2
3,092,167	-				-0.6
3,092,174	+				+0.9
3,092,175	-				-0.5
3,092,182	+				-0.2
3,092,229	-				-1.7
3,092,229	-				+0.1
3,092,229	-				-0.5
3,092,229	-				-0.6
3,092,229	-				-1.9
3,092,240	+				-1.2
3,092,240	+				-0.9
3,092,240	+				-3.3
3,092,241	-				+1.4
3,092,241	-				-2.8
3,092,241	-				-0.9
3,092,244	-				+0.4
3,092,254	+				+0.2
3,092,254	+				+2.0
3,092,255	-				-1.2
3,092,255	-				+0.6
3,092,255	-				-1.8
3,092,255	-				-1.2
3,092,258	+				-0.6
3,092,258	+				+0.2
3,092,258	+				+1.6
3,092,259	-				-1.0
3,092,260	+				-0.5
3,092,260	+				-2.3
3,092,261	-				-0.9
3,092,320	+				+0.4
3,092,331	+				+2.7
3,092,339	-				-1.4
3,092,358	+				+0.4
3,092,358	+				-1.1
3,092,359	-				+0.1
3,092,392	-				+0.7
3,092,392	-				-0.5
3,092,420	+				-0.2
3,092,453	+				-3.6
3,092,453	+				-2.2
3,092,459	-		DDA3937_RS13575	0.10	-1.4
3,092,459	-		DDA3937_RS13575	0.10	+0.3
3,092,571	+				-0.9
3,092,571	+		DDA3937_RS13575	0.17	+1.2
3,092,571	+		DDA3937_RS13575	0.17	-0.2
3,092,572	-		DDA3937_RS13575	0.17	-1.8
3,092,572	-		DDA3937_RS13575	0.17	+2.0
3,092,572	-		DDA3937_RS13575	0.17	-1.1
3,092,578	+		DDA3937_RS13575	0.17	+0.0
3,092,637	-		DDA3937_RS13575	0.21	-2.2
3,092,637	-				+0.4
3,092,637	-		DDA3937_RS13575	0.21	-1.4
3,092,692	+		DDA3937_RS13575	0.24	+1.3
3,092,699	+		DDA3937_RS13575	0.24	-1.2
3,092,699	+		DDA3937_RS13575	0.24	-1.6
3,092,699	+		DDA3937_RS13575	0.24	+0.6
3,092,700	-		DDA3937_RS13575	0.24	-0.2
3,092,700	-		DDA3937_RS13575	0.24	+1.8
3,092,708	+		DDA3937_RS13575	0.25	+1.8
3,092,709	-		DDA3937_RS13575	0.25	+0.2
3,092,738	-		DDA3937_RS13575	0.26	+0.7
3,092,738	-		DDA3937_RS13575	0.26	-2.9
3,092,814	-		DDA3937_RS13575	0.31	+0.6
3,092,814	-		DDA3937_RS13575	0.31	+0.5
3,092,814	-		DDA3937_RS13575	0.31	+0.5
3,092,819	-		DDA3937_RS13575	0.31	-0.2
3,092,819	-		DDA3937_RS13575	0.31	-0.6
3,092,819	-		DDA3937_RS13575	0.31	+0.3
3,092,870	-		DDA3937_RS13575	0.34	-0.6
3,092,872	+		DDA3937_RS13575	0.34	+0.0
3,092,872	+		DDA3937_RS13575	0.34	-1.8
3,092,873	-		DDA3937_RS13575	0.34	-1.8
3,092,885	+		DDA3937_RS13575	0.35	-2.8
3,092,886	-		DDA3937_RS13575	0.35	-0.1
3,092,905	+		DDA3937_RS13575	0.36	+1.8
3,092,905	+		DDA3937_RS13575	0.36	-0.7
3,092,905	+		DDA3937_RS13575	0.36	-2.3
3,092,905	+		DDA3937_RS13575	0.36	+3.6
3,092,905	+		DDA3937_RS13575	0.36	-2.6
3,092,905	+		DDA3937_RS13575	0.36	+1.0
3,092,905	+		DDA3937_RS13575	0.36	-1.2
3,092,906	-		DDA3937_RS13575	0.36	+0.1
3,092,906	-				+0.4
3,092,906	-		DDA3937_RS13575	0.36	+2.4
3,092,906	-		DDA3937_RS13575	0.36	-1.8
3,092,906	-		DDA3937_RS13575	0.36	-2.2
3,092,906	-		DDA3937_RS13575	0.36	-1.2
3,092,906	-		DDA3937_RS13575	0.36	+1.1
3,092,949	+		DDA3937_RS13575	0.39	+1.6
3,092,983	+		DDA3937_RS13575	0.41	-3.1
3,093,056	+		DDA3937_RS13575	0.45	-2.7
3,093,057	-		DDA3937_RS13575	0.45	-0.8
3,093,117	+		DDA3937_RS13575	0.48	-2.7
3,093,117	+		DDA3937_RS13575	0.48	-0.2
3,093,117	+		DDA3937_RS13575	0.48	+1.5
3,093,121	+		DDA3937_RS13575	0.49	-2.1
3,093,121	+		DDA3937_RS13575	0.49	-0.6
3,093,121	+		DDA3937_RS13575	0.49	-1.4
3,093,121	+		DDA3937_RS13575	0.49	+1.4
3,093,122	-		DDA3937_RS13575	0.49	-1.4
3,093,122	-		DDA3937_RS13575	0.49	-4.0
3,093,122	-		DDA3937_RS13575	0.49	+1.5
3,093,122	-		DDA3937_RS13575	0.49	-1.8
3,093,122	-		DDA3937_RS13575	0.49	+2.3
3,093,122	-		DDA3937_RS13575	0.49	+0.6
3,093,159	-		DDA3937_RS13575	0.51	-1.1
3,093,313	-		DDA3937_RS13575	0.60	-0.2
3,093,477	+		DDA3937_RS13575	0.69	+0.8
3,093,477	+		DDA3937_RS13575	0.69	-1.2
3,093,478	-		DDA3937_RS13575	0.69	+0.3
3,093,522	+		DDA3937_RS13575	0.72	-0.6
3,093,523	-		DDA3937_RS13575	0.72	+0.5
3,093,630	+		DDA3937_RS13575	0.78	+0.3
3,093,630	+		DDA3937_RS13575	0.78	-1.9
3,093,691	+		DDA3937_RS13575	0.82	-2.1
3,093,691	+		DDA3937_RS13575	0.82	-2.7
3,093,691	+		DDA3937_RS13575	0.82	-2.4
3,093,691	+		DDA3937_RS13575	0.82	+0.9
3,093,691	+		DDA3937_RS13575	0.82	-0.9
3,093,692	-		DDA3937_RS13575	0.82	-0.6
3,093,692	-		DDA3937_RS13575	0.82	-1.8
3,093,692	-		DDA3937_RS13575	0.82	+0.6
3,093,737	-		DDA3937_RS13575	0.84	-2.3
3,093,899	+				-1.3
3,093,899	+				-0.3
3,093,900	-				+1.0
3,093,937	+				-1.4
3,094,009	+				-0.2
3,094,009	+				+0.7
3,094,009	+				+1.0
3,094,010	-				+0.9
3,094,010	-				-0.2
3,094,010	-				-0.5
3,094,010	-				-2.2
3,094,010	-				-2.1
3,094,012	+				+1.4
3,094,012	+				+3.6
3,094,026	+				+0.2
3,094,026	+				-0.6
3,094,027	-				-0.6
3,094,037	-				-1.8
3,094,054	+				-1.2
3,094,054	+				+0.6
3,094,054	+				-0.8
3,094,055	-				-1.8
3,094,067	+				-0.9
3,094,067	+				-0.6
3,094,068	-				+0.1
3,094,068	-				-1.2
3,094,068	-				+0.7
3,094,068	-				-3.1
3,094,116	+		DDA3937_RS13580	0.25	-0.2
3,094,116	+		DDA3937_RS13580	0.25	+0.4
3,094,117	-		DDA3937_RS13580	0.25	+1.4
3,094,117	-		DDA3937_RS13580	0.25	-1.2
3,094,117	-		DDA3937_RS13580	0.25	-2.8
3,094,169	+		DDA3937_RS13580	0.51	-1.1
3,094,169	+		DDA3937_RS13580	0.51	-2.1
3,094,170	-		DDA3937_RS13580	0.52	-1.4
3,094,170	-		DDA3937_RS13580	0.52	+0.1
3,094,258	+				-1.2
3,094,258	+				+0.6
3,094,259	-				-2.6
3,094,259	-				-1.6
3,094,259	-				-0.5
3,094,323	+				+2.4
3,094,323	+				-2.1
3,094,323	+				-0.8
3,094,324	-				+0.7
3,094,324	-				+2.0
3,094,324	-				+0.6
3,094,324	-				+2.3
3,094,360	+				-1.2
3,094,360	+				+0.2
3,094,362	+				+1.6
3,094,363	-				-0.2
3,094,363	-				+0.6
3,094,363	-				+0.5
3,094,363	-				+1.4
3,094,401	+		DDA3937_RS13585	0.19	+0.8
3,094,410	+		DDA3937_RS13585	0.21	+0.4
3,094,410	+		DDA3937_RS13585	0.21	-1.2
3,094,411	-		DDA3937_RS13585	0.21	-1.4
3,094,413	+		DDA3937_RS13585	0.22	+0.9
3,094,413	+		DDA3937_RS13585	0.22	-0.6
3,094,413	+		DDA3937_RS13585	0.22	+1.4
3,094,413	+		DDA3937_RS13585	0.22	-2.3
3,094,414	-		DDA3937_RS13585	0.22	+1.5
3,094,414	-		DDA3937_RS13585	0.22	+1.2
3,094,414	-		DDA3937_RS13585	0.22	+1.2
3,094,425	+		DDA3937_RS13585	0.25	-1.2
3,094,426	-		DDA3937_RS13585	0.25	+0.5
3,094,581	+		DDA3937_RS13585	0.62	-0.1
3,094,581	+		DDA3937_RS13585	0.62	-2.8
3,094,582	-		DDA3937_RS13585	0.62	+0.2
3,094,582	-		DDA3937_RS13585	0.62	-1.6
3,094,610	-		DDA3937_RS13585	0.69	-0.9
3,094,687	-		DDA3937_RS13585	0.87	-0.3
3,094,687	-		DDA3937_RS13585	0.87	+1.2
3,094,687	-		DDA3937_RS13585	0.87	+0.7
3,094,700	-				-0.2
3,094,700	-				-1.1
3,094,700	-				+0.3
3,094,729	+				-2.4
3,094,730	-				+0.2
3,094,841	-		DDA3937_RS13590	0.12	+1.5
3,094,871	+		DDA3937_RS13590	0.18	+0.8
3,094,871	+		DDA3937_RS13590	0.18	-2.3
3,094,872	-		DDA3937_RS13590	0.19	-1.4
3,094,872	-		DDA3937_RS13590	0.19	-1.4
3,094,881	-		DDA3937_RS13590	0.20	+0.1
3,094,881	-		DDA3937_RS13590	0.20	+1.6
3,094,970	-		DDA3937_RS13590	0.39	+1.8