Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13285

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,030,802	+		DDA3937_RS13275	0.69	-2.5
3,030,802	+		DDA3937_RS13275	0.69	-0.1
3,030,818	+		DDA3937_RS13275	0.72	+1.1
3,030,856	-		DDA3937_RS13275	0.78	-0.6
3,030,936	+				-1.4
3,030,937	-				+1.0
3,030,937	-				+0.9
3,030,937	-				-1.4
3,030,948	-				+0.2
3,030,975	+				+0.7
3,030,975	+				-0.2
3,030,976	-				+1.4
3,030,976	-				+0.9
3,031,014	+				+0.6
3,031,014	+				-0.1
3,031,015	-				-1.1
3,031,091	-				-0.9
3,031,117	-				+0.7
3,031,117	-				-0.9
3,031,129	+				+2.0
3,031,146	-				-2.0
3,031,148	-				-2.5
3,031,227	-		DDA3937_RS13280	0.50	-0.5
3,031,347	+				-2.9
3,031,371	+				-0.1
3,031,371	+				-2.1
3,031,372	-				-0.4
3,031,419	+				-0.1
3,031,427	-				+2.1
3,031,442	+				-1.1
3,031,443	-				+3.0
3,031,489	+				-2.1
3,031,490	-				-0.3
3,031,500	+				-0.9
3,031,501	-				-1.4
3,031,503	+				-0.9
3,031,515	-				-2.7
3,031,537	+				-1.3
3,031,560	-				-0.6
3,031,572	+				-1.4
3,031,572	+				-0.4
3,031,573	-				-1.4
3,031,574	+				-0.9
3,031,574	+				-0.6
3,031,575	-				+1.4
3,031,575	-				-0.6
3,031,639	+				-1.4
3,031,639	+				+0.7
3,031,658	+				-1.1
3,031,659	-				+0.9
3,031,663	+				+0.1
3,031,663	+				-1.1
3,031,678	-				-0.1
3,031,731	+				-0.4
3,031,748	-				+0.2
3,031,768	+				-0.1
3,031,774	-				-2.4
3,031,855	+				+0.7
3,031,855	+				-1.7
3,031,860	+				-1.1
3,031,861	-				+0.6
3,031,894	+		DDA3937_RS13285	0.11	-1.9
3,031,894	+		DDA3937_RS13285	0.11	+0.8
3,031,895	-		DDA3937_RS13285	0.11	-1.6
3,031,909	+		DDA3937_RS13285	0.12	+2.2
3,031,910	-		DDA3937_RS13285	0.12	-1.6
3,031,939	+		DDA3937_RS13285	0.14	-0.6
3,031,939	+		DDA3937_RS13285	0.14	-0.9
3,031,939	+		DDA3937_RS13285	0.14	-0.6
3,031,939	+		DDA3937_RS13285	0.14	-0.6
3,031,939	+		DDA3937_RS13285	0.14	-1.1
3,031,942	+		DDA3937_RS13285	0.14	-2.0
3,031,947	+		DDA3937_RS13285	0.15	+0.3
3,031,948	-		DDA3937_RS13285	0.15	-2.5
3,031,996	+		DDA3937_RS13285	0.18	+0.4
3,031,996	+		DDA3937_RS13285	0.18	-0.6
3,031,996	+		DDA3937_RS13285	0.18	-0.6
3,031,996	+		DDA3937_RS13285	0.18	+0.2
3,031,996	+		DDA3937_RS13285	0.18	+2.4
3,031,996	+		DDA3937_RS13285	0.18	+1.9
3,031,997	-		DDA3937_RS13285	0.18	+2.3
3,032,001	-		DDA3937_RS13285	0.18	-0.1
3,032,003	-		DDA3937_RS13285	0.18	-2.5
3,032,060	+		DDA3937_RS13285	0.22	+0.4
3,032,060	+		DDA3937_RS13285	0.22	-1.4
3,032,089	+		DDA3937_RS13285	0.23	+0.2
3,032,089	+		DDA3937_RS13285	0.23	+1.4
3,032,094	+		DDA3937_RS13285	0.24	+0.1
3,032,095	-		DDA3937_RS13285	0.24	-0.4
3,032,095	-		DDA3937_RS13285	0.24	-4.3
3,032,153	+		DDA3937_RS13285	0.27	-1.1
3,032,153	+		DDA3937_RS13285	0.27	-0.9
3,032,153	+		DDA3937_RS13285	0.27	-2.4
3,032,153	+		DDA3937_RS13285	0.27	-1.6
3,032,153	+		DDA3937_RS13285	0.27	+1.7
3,032,153	+		DDA3937_RS13285	0.27	+2.4
3,032,154	-		DDA3937_RS13285	0.28	+1.0
3,032,201	+		DDA3937_RS13285	0.30	-2.7
3,032,202	-		DDA3937_RS13285	0.31	-1.6
3,032,207	+		DDA3937_RS13285	0.31	+1.0
3,032,207	+		DDA3937_RS13285	0.31	-0.6
3,032,208	-		DDA3937_RS13285	0.31	+0.6
3,032,208	-		DDA3937_RS13285	0.31	+0.4
3,032,214	+		DDA3937_RS13285	0.31	+2.7
3,032,214	+		DDA3937_RS13285	0.31	+0.7
3,032,215	-		DDA3937_RS13285	0.31	-0.4
3,032,215	-		DDA3937_RS13285	0.31	-3.7
3,032,215	-		DDA3937_RS13285	0.31	-0.7
3,032,245	+		DDA3937_RS13285	0.33	-1.4
3,032,245	+		DDA3937_RS13285	0.33	-1.7
3,032,315	-		DDA3937_RS13285	0.38	-1.9
3,032,339	+		DDA3937_RS13285	0.39	+0.5
3,032,339	+		DDA3937_RS13285	0.39	-0.6
3,032,339	+		DDA3937_RS13285	0.39	-0.6
3,032,340	-		DDA3937_RS13285	0.39	-0.6
3,032,404	-		DDA3937_RS13285	0.43	+2.8
3,032,462	-		DDA3937_RS13285	0.47	+0.1
3,032,617	+		DDA3937_RS13285	0.56	+0.7
3,032,617	+		DDA3937_RS13285	0.56	+1.7
3,032,617	+		DDA3937_RS13285	0.56	-1.4
3,032,617	+		DDA3937_RS13285	0.56	-1.5
3,032,618	-		DDA3937_RS13285	0.56	-2.1
3,032,659	+		DDA3937_RS13285	0.59	-0.5
3,032,659	+		DDA3937_RS13285	0.59	-0.4
3,032,659	+		DDA3937_RS13285	0.59	-0.1
3,032,659	+		DDA3937_RS13285	0.59	+1.4
3,032,659	+		DDA3937_RS13285	0.59	-1.7
3,032,731	+		DDA3937_RS13285	0.63	-1.7
3,032,731	+		DDA3937_RS13285	0.63	-0.8
3,032,731	+		DDA3937_RS13285	0.63	+3.0
3,032,731	+		DDA3937_RS13285	0.63	-0.0
3,032,731	+		DDA3937_RS13285	0.63	+0.0
3,032,732	-		DDA3937_RS13285	0.64	-0.2
3,032,732	-				-0.1
3,032,732	-		DDA3937_RS13285	0.64	-0.9
3,032,732	-		DDA3937_RS13285	0.64	-1.2
3,032,732	-		DDA3937_RS13285	0.64	+0.3
3,032,776	-		DDA3937_RS13285	0.66	-0.0
3,032,776	-		DDA3937_RS13285	0.66	+0.3
3,033,048	+		DDA3937_RS13285	0.83	-0.9
3,033,049	-		DDA3937_RS13285	0.83	-4.0
3,033,263	-				+0.9
3,033,274	+				+1.3
3,033,288	+				-0.8
3,033,288	+				-0.1
3,033,288	+				-1.6
3,033,288	+				-0.1
3,033,288	+				-0.4
3,033,289	-				-1.4
3,033,289	-				-0.9
3,033,289	-				-2.7
3,033,289	-				-0.3
3,033,289	-				+1.1
3,033,289	-				+0.8
3,033,289	-				+1.4
3,033,371	-				-1.7
3,033,392	+				-2.6
3,033,392	+				+3.5
3,033,393	-				+1.1
3,033,405	+				-1.7
3,033,405	+				-1.1
3,033,406	-				+0.1
3,033,406	-				-0.9
3,033,460	+				-1.7
3,033,460	+				-1.9
3,033,537	+		DDA3937_RS13290	0.19	-1.5
3,033,537	+		DDA3937_RS13290	0.19	-1.7
3,033,541	-		DDA3937_RS13290	0.20	-1.3
3,033,666	+		DDA3937_RS13290	0.36	-2.4
3,033,667	-		DDA3937_RS13290	0.36	-1.4
3,033,667	-		DDA3937_RS13290	0.36	-0.6
3,033,667	-		DDA3937_RS13290	0.36	+0.1
3,033,667	-		DDA3937_RS13290	0.36	+1.4
3,033,668	+		DDA3937_RS13290	0.36	-2.0
3,033,668	+		DDA3937_RS13290	0.36	+0.9
3,033,668	+		DDA3937_RS13290	0.36	-1.1
3,033,669	-		DDA3937_RS13290	0.36	-2.6
3,033,669	-		DDA3937_RS13290	0.36	-0.7
3,033,669	-		DDA3937_RS13290	0.36	-0.9
3,033,688	+		DDA3937_RS13290	0.38	+0.9
3,033,689	-		DDA3937_RS13290	0.39	-1.1
3,033,716	+		DDA3937_RS13290	0.42	-2.1
3,033,716	+		DDA3937_RS13290	0.42	-2.5
3,033,716	+		DDA3937_RS13290	0.42	-1.9
3,033,716	+		DDA3937_RS13290	0.42	+2.0
3,033,716	+		DDA3937_RS13290	0.42	+2.1
3,033,717	-		DDA3937_RS13290	0.42	-2.9
3,033,717	-		DDA3937_RS13290	0.42	-0.9
3,033,758	+		DDA3937_RS13290	0.47	+1.0
3,033,758	+		DDA3937_RS13290	0.47	+1.8
3,033,758	+		DDA3937_RS13290	0.47	+0.1
3,033,758	+		DDA3937_RS13290	0.47	-0.6
3,033,758	+		DDA3937_RS13290	0.47	+0.3
3,033,758	+		DDA3937_RS13290	0.47	-0.1
3,033,773	+				-0.6
3,033,774	-		DDA3937_RS13290	0.49	+1.9
3,033,855	+		DDA3937_RS13290	0.60	-1.6
3,033,855	+		DDA3937_RS13290	0.60	+1.4
3,033,855	+		DDA3937_RS13290	0.60	-0.4
3,033,855	+		DDA3937_RS13290	0.60	+0.0
3,033,856	-		DDA3937_RS13290	0.60	-2.0
3,033,856	-		DDA3937_RS13290	0.60	-1.6
3,033,856	-		DDA3937_RS13290	0.60	-0.0
3,033,871	-		DDA3937_RS13290	0.62	-1.6
3,033,947	-		DDA3937_RS13290	0.71	+1.4
3,033,947	-		DDA3937_RS13290	0.71	-1.1
3,033,947	-				-0.6
3,033,955	-		DDA3937_RS13290	0.72	-0.6
3,033,961	+		DDA3937_RS13290	0.73	-1.9
3,033,962	-		DDA3937_RS13290	0.73	-0.9
3,033,974	+		DDA3937_RS13290	0.75	-0.7
3,033,974	+		DDA3937_RS13290	0.75	+2.1
3,033,974	+		DDA3937_RS13290	0.75	-0.5
3,033,974	+		DDA3937_RS13290	0.75	+2.8
3,033,975	-		DDA3937_RS13290	0.75	+0.6
3,033,975	-		DDA3937_RS13290	0.75	-0.4
3,034,174	-				-0.3
3,034,184	+				-1.0
3,034,185	-				-0.1
3,034,185	-				+1.2
3,034,185	-				+1.8
3,034,185	-				-0.1
3,034,185	-				-1.1
3,034,206	-				+1.1
3,034,257	+				+1.4
3,034,258	-				-0.6
3,034,264	+				-3.3