Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13015

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,970,818	+		DDA3937_RS13010	0.66	+2.1
2,970,818	+		DDA3937_RS13010	0.66	-1.9
2,970,920	+		DDA3937_RS13010	0.74	-2.3
2,971,069	+		DDA3937_RS13010	0.85	+0.1
2,971,069	+		DDA3937_RS13010	0.85	-1.5
2,971,069	+		DDA3937_RS13010	0.85	+0.6
2,971,070	-		DDA3937_RS13010	0.85	+0.9
2,971,070	-		DDA3937_RS13010	0.85	+0.1
2,971,070	-		DDA3937_RS13010	0.85	-1.1
2,971,127	+		DDA3937_RS13010	0.89	-2.3
2,971,127	+		DDA3937_RS13010	0.89	-1.9
2,971,127	+		DDA3937_RS13010	0.89	+1.9
2,971,128	-		DDA3937_RS13010	0.89	-0.1
2,971,128	-				-0.5
2,971,284	-				+1.7
2,971,302	+				+0.9
2,971,302	+				+0.0
2,971,302	+				-0.3
2,971,302	+				-2.6
2,971,302	+				+1.0
2,971,303	-				+0.4
2,971,313	+				+1.2
2,971,314	-				-0.9
2,971,317	+				-1.7
2,971,317	+				+1.9
2,971,318	-				-0.3
2,971,318	-				-3.1
2,971,318	-				-0.9
2,971,318	-				+1.0
2,971,318	-				+2.1
2,971,318	-				-0.7
2,971,318	-				+0.5
2,971,318	-				+3.2
2,971,320	+				-2.2
2,971,320	+				-1.3
2,971,320	+				+0.0
2,971,320	+				-1.0
2,971,321	-				+0.9
2,971,321	-				-0.1
2,971,321	-				+0.4
2,971,336	+				+1.5
2,971,336	+				-0.6
2,971,336	+				+1.8
2,971,403	-				-0.4
2,971,546	-		DDA3937_RS13015	0.23	-2.8
2,971,618	+		DDA3937_RS13015	0.32	-1.2
2,971,618	+		DDA3937_RS13015	0.32	-1.3
2,971,618	+		DDA3937_RS13015	0.32	-0.8
2,971,618	+		DDA3937_RS13015	0.32	+0.4
2,971,619	-		DDA3937_RS13015	0.32	+1.8
2,971,647	-		DDA3937_RS13015	0.36	+0.0
2,971,647	-		DDA3937_RS13015	0.36	-0.9
2,971,655	-		DDA3937_RS13015	0.37	-1.2
2,971,734	+		DDA3937_RS13015	0.46	-0.9
2,971,734	+		DDA3937_RS13015	0.46	-1.1
2,971,734	+		DDA3937_RS13015	0.46	-1.9
2,971,735	-		DDA3937_RS13015	0.46	-0.5
2,971,735	-		DDA3937_RS13015	0.46	-2.4
2,971,735	-		DDA3937_RS13015	0.46	-1.9
2,971,945	+		DDA3937_RS13015	0.72	-2.8
2,971,949	+		DDA3937_RS13015	0.73	-1.5
2,971,950	-		DDA3937_RS13015	0.73	-2.7
2,971,950	-		DDA3937_RS13015	0.73	-1.7
2,971,950	-		DDA3937_RS13015	0.73	-0.3
2,971,950	-		DDA3937_RS13015	0.73	+0.5
2,971,996	+		DDA3937_RS13015	0.78	-2.2
2,972,001	-		DDA3937_RS13015	0.79	-0.1
2,972,066	+		DDA3937_RS13015	0.87	+0.1
2,972,067	-		DDA3937_RS13015	0.87	-2.3
2,972,097	+				+0.5
2,972,098	-				-2.0
2,972,144	-				-1.7
2,972,144	-				-3.1
2,972,171	+				-2.5
2,972,171	+				-0.5
2,972,171	+				+1.5
2,972,171	+				-0.9
2,972,171	+				-1.6
2,972,171	+				+0.5
2,972,171	+				+1.2
2,972,171	+				-1.5
2,972,171	+				-1.5
2,972,171	+				+0.3
2,972,171	+				-3.2
2,972,171	+				+1.1
2,972,171	+				+0.1
2,972,171	+				-3.3
2,972,172	-				-2.6
2,972,172	-				-0.5
2,972,172	-				-0.5
2,972,172	-				-0.5
2,972,172	-				+0.4
2,972,172	-				+1.0
2,972,172	-				-0.7
2,972,172	-				-3.0
2,972,172	-				-1.1
2,972,172	-				-2.0
2,972,172	-				-0.5
2,972,172	-				+1.6
2,972,172	-				+2.8
2,972,172	-				-1.0
2,972,172	-				+2.2
2,972,172	-				-0.6
2,972,172	-				-1.7
2,972,173	+				-1.1
2,972,173	+				+0.1
2,972,173	+				-1.0
2,972,173	+				-0.4
2,972,173	+				-0.5
2,972,173	+				+0.4
2,972,173	+				-2.3
2,972,173	+				+1.3
2,972,174	-				+1.8
2,972,174	-				-2.8
2,972,174	-				-2.4
2,972,174	-				-1.1
2,972,174	-				-1.1
2,972,193	-				-1.5
2,972,200	+				-1.2
2,972,208	+				+1.5
2,972,254	-				+1.1
2,972,288	-				-1.9
2,972,393	+				-0.1
2,972,394	-				+0.4
2,972,395	+				-0.4
2,972,395	+				+0.2
2,972,395	+				+1.3
2,972,396	-				-0.9
2,972,396	-				-2.6
2,972,428	-				-3.0
2,972,428	-				-0.5
2,972,433	+				-0.9
2,972,433	+				+0.8
2,972,433	+				-0.7
2,972,433	+				+1.1
2,972,434	-				-2.1
2,972,434	-				+1.9
2,972,434	-				-0.9
2,972,434	-				+3.6
2,972,434	-				+1.4
2,972,434	-				-0.9
2,972,434	-				+0.9
2,972,434	-				+1.7
2,972,480	+				-2.9
2,972,486	+				-2.8
2,972,487	-				-0.1
2,972,487	-				+0.2
2,972,575	-				-1.3
2,972,575	-				-1.3
2,972,648	+		DDA3937_RS13020	0.13	+0.6
2,972,649	-		DDA3937_RS13020	0.13	-2.1
2,972,773	+		DDA3937_RS13020	0.18	-1.1
2,972,774	-		DDA3937_RS13020	0.18	+1.1
2,972,801	-		DDA3937_RS13020	0.19	-0.4
2,972,888	+		DDA3937_RS13020	0.23	-0.5
2,972,966	+		DDA3937_RS13020	0.26	+1.5
2,972,966	+		DDA3937_RS13020	0.26	+0.7
2,972,967	-		DDA3937_RS13020	0.26	+0.9
2,972,967	-		DDA3937_RS13020	0.26	+1.0
2,972,967	-		DDA3937_RS13020	0.26	+2.3
2,972,967	-		DDA3937_RS13020	0.26	-2.5
2,972,968	+		DDA3937_RS13020	0.26	+1.5
2,972,968	+		DDA3937_RS13020	0.26	+3.9
2,972,968	+		DDA3937_RS13020	0.26	+0.3
2,972,968	+		DDA3937_RS13020	0.26	-3.1
2,972,969	-		DDA3937_RS13020	0.26	+0.1
2,972,969	-		DDA3937_RS13020	0.26	-2.0
2,972,969	-		DDA3937_RS13020	0.26	-2.2
2,972,969	-		DDA3937_RS13020	0.26	-1.1
2,972,969	-		DDA3937_RS13020	0.26	-1.5
2,972,969	-		DDA3937_RS13020	0.26	-0.9
2,972,969	-				+0.5
2,972,969	-		DDA3937_RS13020	0.26	+0.9
2,972,969	-		DDA3937_RS13020	0.26	-0.3
2,972,974	+		DDA3937_RS13020	0.26	+3.6
2,972,975	-		DDA3937_RS13020	0.26	-0.9
2,972,975	-		DDA3937_RS13020	0.26	-0.1
2,973,084	-		DDA3937_RS13020	0.31	-0.1
2,973,143	+		DDA3937_RS13020	0.34	+0.2
2,973,143	+		DDA3937_RS13020	0.34	+0.6
2,973,143	+		DDA3937_RS13020	0.34	-0.1
2,973,143	+		DDA3937_RS13020	0.34	-0.2