Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12930

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,949,114	+				-0.1
2,949,114	+				-1.4
2,949,114	+				+1.7
2,949,115	-				+0.4
2,949,115	-				-1.6
2,949,153	-				+3.0
2,949,160	+				-1.1
2,949,180	+				-1.5
2,949,289	+		DDA3937_RS12925	0.10	+1.0
2,949,289	+		DDA3937_RS12925	0.10	+2.5
2,949,289	+		DDA3937_RS12925	0.10	+1.5
2,949,289	+		DDA3937_RS12925	0.10	+0.3
2,949,388	+		DDA3937_RS12925	0.28	-0.9
2,949,389	-		DDA3937_RS12925	0.28	+0.1
2,949,389	-		DDA3937_RS12925	0.28	+2.8
2,949,389	-		DDA3937_RS12925	0.28	+0.5
2,949,389	-				-0.1
2,949,389	-		DDA3937_RS12925	0.28	-1.8
2,949,410	+		DDA3937_RS12925	0.32	-0.5
2,949,442	+		DDA3937_RS12925	0.38	-0.4
2,949,479	+		DDA3937_RS12925	0.45	+1.2
2,949,480	-		DDA3937_RS12925	0.45	-0.9
2,949,507	+		DDA3937_RS12925	0.50	-0.9
2,949,507	+		DDA3937_RS12925	0.50	-1.4
2,949,507	+		DDA3937_RS12925	0.50	+2.3
2,949,508	-		DDA3937_RS12925	0.50	+0.6
2,949,508	-		DDA3937_RS12925	0.50	+0.2
2,949,508	-		DDA3937_RS12925	0.50	+1.5
2,949,534	-				-0.1
2,949,586	-		DDA3937_RS12925	0.64	+1.2
2,949,599	+		DDA3937_RS12925	0.66	-0.1
2,949,602	-		DDA3937_RS12925	0.67	+0.9
2,949,602	-		DDA3937_RS12925	0.67	+1.8
2,949,645	-		DDA3937_RS12925	0.75	+1.0
2,949,650	+		DDA3937_RS12925	0.76	+0.3
2,949,662	+		DDA3937_RS12925	0.78	-1.4
2,949,663	-		DDA3937_RS12925	0.78	-1.4
2,949,663	-		DDA3937_RS12925	0.78	-2.4
2,949,767	+				-0.9
2,949,767	+				+0.5
2,949,842	+				+0.7
2,949,842	+				-0.1
2,949,842	+				-1.7
2,949,842	+				-0.9
2,949,842	+				+0.1
2,949,842	+				-1.7
2,949,843	-				+0.1
2,949,843	-				-1.4
2,949,843	-				-2.1
2,949,843	-				-2.5
2,949,843	-				+0.5
2,949,843	-				-1.8
2,949,844	+				-0.9
2,949,844	+				+0.2
2,949,844	+				-1.9
2,949,844	+				-2.2
2,949,844	+				+3.5
2,949,845	-				-0.9
2,949,864	+				-2.1
2,949,979	+				-1.2
2,949,983	+				-1.1
2,949,983	+				-1.9
2,949,983	+				+0.5
2,949,983	+				+1.5
2,949,983	+				+2.0
2,949,984	-				-0.5
2,949,984	-				+1.7
2,949,984	-				-1.3
2,949,989	-				+1.5
2,949,989	-				+0.9
2,949,989	-				-2.9
2,949,991	+				-2.1
2,949,991	+				-0.6
2,949,991	+				-0.6
2,950,044	-				-0.1
2,950,044	-				-2.2
2,950,049	+				+0.2
2,950,049	+				-2.0
2,950,049	+				-1.7
2,950,050	-				-0.6
2,950,054	-				+0.6
2,950,054	-				-0.4
2,950,103	+				+0.2
2,950,103	+				-0.4
2,950,104	-				-1.7
2,950,104	-				-0.7
2,950,104	-				-1.2
2,950,104	-				-2.2
2,950,104	-				-0.6
2,950,106	+				+0.2
2,950,142	+				+1.3
2,950,142	+				+0.1
2,950,142	+				-1.4
2,950,142	+				+0.5
2,950,142	+				+0.5
2,950,142	+				-2.1
2,950,142	+				-1.2
2,950,142	+				-2.5
2,950,143	-				-1.4
2,950,143	-				-0.9
2,950,143	-				-0.1
2,950,143	-				+1.4
2,950,143	-				-0.7
2,950,258	+		DDA3937_RS12930	0.16	+1.8
2,950,258	+		DDA3937_RS12930	0.16	-1.8
2,950,269	+		DDA3937_RS12930	0.17	-1.1
2,950,310	+		DDA3937_RS12930	0.19	-2.6
2,950,311	-		DDA3937_RS12930	0.19	-1.9
2,950,311	-		DDA3937_RS12930	0.19	+0.5
2,950,311	-		DDA3937_RS12930	0.19	+0.6
2,950,333	-		DDA3937_RS12930	0.21	-1.1
2,950,478	+		DDA3937_RS12930	0.29	-0.1
2,950,497	-		DDA3937_RS12930	0.30	-1.5
2,950,519	-		DDA3937_RS12930	0.32	+1.4
2,950,667	+		DDA3937_RS12930	0.41	-1.4
2,950,670	+		DDA3937_RS12930	0.41	+1.4
2,950,683	-		DDA3937_RS12930	0.42	+0.5
2,950,683	-		DDA3937_RS12930	0.42	-1.9
2,950,683	-		DDA3937_RS12930	0.42	-0.2
2,950,683	-		DDA3937_RS12930	0.42	+0.2
2,950,746	+		DDA3937_RS12930	0.45	+0.4
2,950,898	-		DDA3937_RS12930	0.54	+1.5
2,950,898	-		DDA3937_RS12930	0.54	-1.5
2,950,898	-		DDA3937_RS12930	0.54	-0.1
2,950,898	-		DDA3937_RS12930	0.54	-1.1
2,950,902	+		DDA3937_RS12930	0.54	-1.8
2,950,902	+		DDA3937_RS12930	0.54	-1.1
2,950,902	+		DDA3937_RS12930	0.54	-1.7
2,950,902	+		DDA3937_RS12930	0.54	-2.5
2,950,902	+		DDA3937_RS12930	0.54	-1.1
2,950,902	+		DDA3937_RS12930	0.54	+2.0
2,950,902	+		DDA3937_RS12930	0.54	-2.4
2,950,921	-		DDA3937_RS12930	0.56	+1.5
2,950,921	-		DDA3937_RS12930	0.56	-2.5
2,950,982	-		DDA3937_RS12930	0.59	+1.1
2,951,127	+		DDA3937_RS12930	0.68	-1.7
2,951,127	+		DDA3937_RS12930	0.68	+1.6
2,951,127	+		DDA3937_RS12930	0.68	+0.3
2,951,202	+		DDA3937_RS12930	0.72	+0.1
2,951,202	+		DDA3937_RS12930	0.72	-1.2
2,951,203	-		DDA3937_RS12930	0.72	-1.2
2,951,203	-		DDA3937_RS12930	0.72	-0.5
2,951,203	-		DDA3937_RS12930	0.72	+1.3
2,951,203	-		DDA3937_RS12930	0.72	+1.7
2,951,203	-		DDA3937_RS12930	0.72	-3.5
2,951,204	+		DDA3937_RS12930	0.72	-0.5
2,951,205	-		DDA3937_RS12930	0.72	-0.1
2,951,205	-				+1.5
2,951,220	-		DDA3937_RS12930	0.73	+0.1
2,951,220	-		DDA3937_RS12930	0.73	-1.1
2,951,220	-		DDA3937_RS12930	0.73	-1.9
2,951,220	-		DDA3937_RS12930	0.73	+1.0
2,951,267	+		DDA3937_RS12930	0.76	+0.4
2,951,268	-		DDA3937_RS12930	0.76	+1.3
2,951,315	-		DDA3937_RS12930	0.79	+0.7
2,951,407	-		DDA3937_RS12930	0.84	+0.7
2,951,451	+		DDA3937_RS12930	0.87	+0.6
2,951,452	-		DDA3937_RS12930	0.87	-2.0
2,951,453	+		DDA3937_RS12930	0.87	+0.1
2,951,454	-		DDA3937_RS12930	0.87	+1.5
2,951,454	-		DDA3937_RS12930	0.87	-1.2
2,951,478	-		DDA3937_RS12930	0.89	-0.1
2,951,478	-		DDA3937_RS12930	0.89	+1.5
2,951,478	-		DDA3937_RS12930	0.89	-0.0
2,951,491	-		DDA3937_RS12930	0.89	-0.7
2,951,520	+				-1.1
2,951,520	+				-0.5
2,951,520	+				-0.9
2,951,520	+				-1.1
2,951,520	+				-2.4
2,951,521	-				-2.2
2,951,521	-				-0.5
2,951,521	-				-0.9
2,951,605	-				-1.5
2,951,650	-				-1.3
2,951,650	-				+0.1
2,951,662	+				-0.0
2,951,676	+				-1.7
2,951,685	+				+0.6
2,951,685	+				-1.2
2,951,686	-				-2.0
2,951,686	-				+0.3
2,951,689	+				-1.1
2,951,689	+				-0.6
2,951,706	+				-2.2
2,951,766	+				+0.8
2,951,767	-				-1.1
2,951,768	+				-0.4
2,951,768	+				-1.4
2,951,768	+				+0.1
2,951,768	+				+1.0
2,951,769	-				+0.1
2,951,780	+				+0.1
2,951,803	+				-0.5
2,951,804	-				-1.1
2,951,804	-				+0.7
2,951,805	+				-1.9
2,951,805	+				-1.5
2,951,819	+				+0.8
2,951,819	+				-0.3
2,951,820	-				+0.3
2,951,853	+				-1.1
2,951,877	-				-0.9
2,951,877	-				+2.7
2,951,877	-				-1.5
2,951,879	-				-0.2
2,951,907	-				-1.1
2,951,907	-				+1.1
2,951,909	+				-1.0
2,951,919	-				-0.5
2,951,941	+				-2.5
2,951,942	-				-0.3
2,951,942	-				-3.0
2,951,942	-				-2.1
2,951,956	+				+0.9
2,951,957	-				-0.5
2,951,957	-				-2.8
2,952,097	-				+0.1
2,952,107	+				+0.2
2,952,107	+				-0.1
2,952,107	+				-1.4
2,952,107	+				+0.9
2,952,108	-				-2.2
2,952,108	-				+0.9
2,952,180	+		DDA3937_RS12935	0.11	-0.9
2,952,180	+		DDA3937_RS12935	0.11	-1.5
2,952,180	+		DDA3937_RS12935	0.11	-1.9
2,952,181	-		DDA3937_RS12935	0.12	+0.3
2,952,181	-		DDA3937_RS12935	0.12	-2.6
2,952,181	-		DDA3937_RS12935	0.12	+1.0
2,952,181	-		DDA3937_RS12935	0.12	+0.7
2,952,181	-		DDA3937_RS12935	0.12	-0.5
2,952,184	+		DDA3937_RS12935	0.12	-1.1
2,952,184	+		DDA3937_RS12935	0.12	+1.4
2,952,184	+		DDA3937_RS12935	0.12	-2.9
2,952,184	+		DDA3937_RS12935	0.12	-2.5
2,952,184	+		DDA3937_RS12935	0.12	-1.8
2,952,185	-		DDA3937_RS12935	0.12	-1.4
2,952,188	+		DDA3937_RS12935	0.12	+2.3
2,952,195	+		DDA3937_RS12935	0.12	+0.5
2,952,196	-		DDA3937_RS12935	0.13	-1.2
2,952,196	-		DDA3937_RS12935	0.13	-1.5
2,952,321	-		DDA3937_RS12935	0.21	-0.5
2,952,370	+		DDA3937_RS12935	0.25	-1.4
2,952,371	-		DDA3937_RS12935	0.25	-0.6
2,952,376	+		DDA3937_RS12935	0.25	-3.6
2,952,377	-		DDA3937_RS12935	0.25	+1.0
2,952,377	-		DDA3937_RS12935	0.25	-1.3
2,952,378	+		DDA3937_RS12935	0.25	+0.9
2,952,378	+		DDA3937_RS12935	0.25	+1.2
2,952,379	-		DDA3937_RS12935	0.25	+0.3
2,952,427	+		DDA3937_RS12935	0.28	-1.5
2,952,427	+		DDA3937_RS12935	0.28	+1.9
2,952,427	+		DDA3937_RS12935	0.28	+0.3
2,952,427	+		DDA3937_RS12935	0.28	-0.4
2,952,427	+		DDA3937_RS12935	0.28	-0.1
2,952,427	+		DDA3937_RS12935	0.28	-1.2
2,952,428	-		DDA3937_RS12935	0.29	-1.4
2,952,604	+		DDA3937_RS12935	0.41	-3.0
2,952,605	-		DDA3937_RS12935	0.41	-0.4
2,952,640	+		DDA3937_RS12935	0.43	-2.9
2,952,649	-				-0.9