Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12835

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,922,541	+		DDA3937_RS12830	0.58	+2.2
2,922,542	-		DDA3937_RS12830	0.58	+0.2
2,922,543	+		DDA3937_RS12830	0.58	-2.5
2,922,543	+		DDA3937_RS12830	0.58	+0.8
2,922,543	+		DDA3937_RS12830	0.58	-0.1
2,922,543	+		DDA3937_RS12830	0.58	+1.3
2,922,543	+		DDA3937_RS12830	0.58	+0.4
2,922,543	+		DDA3937_RS12830	0.58	+0.1
2,922,543	+		DDA3937_RS12830	0.58	-1.9
2,922,543	+		DDA3937_RS12830	0.58	-0.7
2,922,544	-		DDA3937_RS12830	0.58	-0.4
2,922,544	-		DDA3937_RS12830	0.58	-0.6
2,922,544	-		DDA3937_RS12830	0.58	+0.6
2,922,544	-		DDA3937_RS12830	0.58	-0.1
2,922,544	-		DDA3937_RS12830	0.58	-0.6
2,922,544	-		DDA3937_RS12830	0.58	-0.6
2,922,544	-		DDA3937_RS12830	0.58	-0.1
2,922,544	-		DDA3937_RS12830	0.58	-1.7
2,922,544	-		DDA3937_RS12830	0.58	+0.3
2,922,544	-		DDA3937_RS12830	0.58	-0.9
2,922,580	-		DDA3937_RS12830	0.61	+0.4
2,922,587	+		DDA3937_RS12830	0.61	+0.6
2,922,587	+		DDA3937_RS12830	0.61	+1.5
2,922,587	+		DDA3937_RS12830	0.61	+0.9
2,922,587	+		DDA3937_RS12830	0.61	-0.1
2,922,587	+		DDA3937_RS12830	0.61	-0.1
2,922,587	+		DDA3937_RS12830	0.61	+1.2
2,922,587	+		DDA3937_RS12830	0.61	+0.9
2,922,588	-		DDA3937_RS12830	0.62	-4.3
2,922,588	-		DDA3937_RS12830	0.62	-0.8
2,922,588	-		DDA3937_RS12830	0.62	-1.7
2,922,588	-		DDA3937_RS12830	0.62	-1.7
2,922,588	-		DDA3937_RS12830	0.62	-1.7
2,922,588	-		DDA3937_RS12830	0.62	-1.2
2,922,588	-		DDA3937_RS12830	0.62	-0.7
2,922,588	-				-0.6
2,922,594	-		DDA3937_RS12830	0.62	-1.4
2,922,594	-		DDA3937_RS12830	0.62	-2.1
2,922,786	+		DDA3937_RS12830	0.77	-2.4
2,922,786	+		DDA3937_RS12830	0.77	+1.0
2,922,786	+		DDA3937_RS12830	0.77	+1.3
2,922,786	+		DDA3937_RS12830	0.77	+2.3
2,922,787	-		DDA3937_RS12830	0.77	-0.8
2,922,787	-		DDA3937_RS12830	0.77	+1.8
2,922,787	-		DDA3937_RS12830	0.77	-0.9
2,922,905	-		DDA3937_RS12830	0.87	-2.4
2,922,964	+				+1.9
2,922,964	+				+0.1
2,923,053	+				-1.4
2,923,053	+				+1.8
2,923,053	+				-1.1
2,923,054	-				-2.6
2,923,054	-				-0.6
2,923,054	-				-1.1
2,923,054	-				-1.4
2,923,054	-				-1.7
2,923,054	-				+0.4
2,923,054	-				-2.4
2,923,202	-				-2.6
2,923,271	+				-1.6
2,923,294	+				-1.9
2,923,419	-				+2.1
2,923,462	-				+1.4
2,923,462	-				-2.3
2,923,636	+				+1.0
2,923,636	+				-0.9
2,923,636	+				-0.1
2,923,636	+				+0.4
2,923,637	-				-1.7
2,923,637	-				-1.1
2,923,672	+		DDA3937_RS12835	0.11	+0.9
2,923,673	-		DDA3937_RS12835	0.11	+1.2
2,923,673	-		DDA3937_RS12835	0.11	+2.9
2,923,674	+		DDA3937_RS12835	0.11	-2.6
2,923,674	+		DDA3937_RS12835	0.11	+1.9
2,923,674	+		DDA3937_RS12835	0.11	-0.1
2,923,674	+		DDA3937_RS12835	0.11	+1.0
2,923,674	+		DDA3937_RS12835	0.11	+2.7
2,923,674	+		DDA3937_RS12835	0.11	+1.6
2,923,675	-		DDA3937_RS12835	0.11	-1.5
2,923,675	-		DDA3937_RS12835	0.11	+0.4
2,923,675	-		DDA3937_RS12835	0.11	+0.9
2,923,675	-		DDA3937_RS12835	0.11	+0.2
2,923,700	-				-0.9
2,923,824	+		DDA3937_RS12835	0.19	-1.9
2,923,824	+		DDA3937_RS12835	0.19	+0.8
2,923,825	-		DDA3937_RS12835	0.19	-2.6
2,923,825	-		DDA3937_RS12835	0.19	+0.9
2,923,825	-		DDA3937_RS12835	0.19	-1.4
2,923,825	-		DDA3937_RS12835	0.19	+0.5
2,923,825	-		DDA3937_RS12835	0.19	-1.7
2,923,825	-		DDA3937_RS12835	0.19	+0.6
2,923,825	-		DDA3937_RS12835	0.19	-0.0
2,923,825	-		DDA3937_RS12835	0.19	-0.4
2,923,827	+		DDA3937_RS12835	0.19	-0.1
2,923,828	-		DDA3937_RS12835	0.19	+0.4
2,923,938	+		DDA3937_RS12835	0.25	+2.7
2,923,938	+		DDA3937_RS12835	0.25	-0.9
2,924,174	-		DDA3937_RS12835	0.37	+4.5
2,924,174	-		DDA3937_RS12835	0.37	-2.1
2,924,174	-		DDA3937_RS12835	0.37	-1.1
2,924,174	-		DDA3937_RS12835	0.37	+0.5
2,924,174	-		DDA3937_RS12835	0.37	+0.4
2,924,174	-		DDA3937_RS12835	0.37	-1.1
2,924,174	-		DDA3937_RS12835	0.37	-1.3
2,924,238	+		DDA3937_RS12835	0.40	+3.2
2,924,238	+		DDA3937_RS12835	0.40	+1.3
2,924,238	+		DDA3937_RS12835	0.40	-1.7
2,924,270	-		DDA3937_RS12835	0.42	+3.3
2,924,270	-		DDA3937_RS12835	0.42	-0.9
2,924,356	+		DDA3937_RS12835	0.46	+1.7
2,924,415	+		DDA3937_RS12835	0.49	-2.4
2,924,438	+		DDA3937_RS12835	0.51	-0.1
2,924,438	+		DDA3937_RS12835	0.51	+0.6
2,924,439	-		DDA3937_RS12835	0.51	-0.4
2,924,493	-		DDA3937_RS12835	0.53	+0.7
2,924,493	-		DDA3937_RS12835	0.53	-3.0
2,924,493	-		DDA3937_RS12835	0.53	+1.2
2,924,524	+				+1.4
2,924,524	+		DDA3937_RS12835	0.55	-0.6
2,924,525	-		DDA3937_RS12835	0.55	+0.5
2,924,525	-		DDA3937_RS12835	0.55	+2.0
2,924,554	+		DDA3937_RS12835	0.57	-2.6
2,924,663	-		DDA3937_RS12835	0.62	-0.4
2,924,673	+				-0.9
2,924,673	+		DDA3937_RS12835	0.63	-1.0
2,924,674	-		DDA3937_RS12835	0.63	+2.6
2,924,674	-		DDA3937_RS12835	0.63	-0.6
2,924,674	-		DDA3937_RS12835	0.63	-1.5
2,924,740	+		DDA3937_RS12835	0.66	-2.7
2,924,741	-		DDA3937_RS12835	0.66	+0.6
2,924,741	-		DDA3937_RS12835	0.66	+1.6
2,924,749	+		DDA3937_RS12835	0.67	-2.0
2,924,770	+		DDA3937_RS12835	0.68	-0.1
2,924,770	+		DDA3937_RS12835	0.68	-0.0
2,924,770	+		DDA3937_RS12835	0.68	-0.4
2,924,770	+		DDA3937_RS12835	0.68	-0.8
2,924,771	-		DDA3937_RS12835	0.68	-0.6
2,925,093	+		DDA3937_RS12835	0.84	+0.4
2,925,093	+		DDA3937_RS12835	0.84	-1.1
2,925,093	+		DDA3937_RS12835	0.84	-0.9
2,925,094	-		DDA3937_RS12835	0.84	-1.1
2,925,105	+		DDA3937_RS12835	0.85	-1.0
2,925,105	+		DDA3937_RS12835	0.85	-2.5
2,925,210	+				-0.1
2,925,211	-				+3.8
2,925,211	-				-1.7
2,925,236	+				-4.0
2,925,236	+				+0.4
2,925,236	+				-2.0
2,925,320	-				-1.7
2,925,397	+				+1.1
2,925,397	+				-0.3
2,925,397	+				-0.6
2,925,397	+				+0.9
2,925,398	-				+0.4
2,925,398	-				-0.6
2,925,398	-				-0.9
2,925,398	-				+2.2
2,925,398	-				+1.1
2,925,398	-				+0.4
2,925,401	+				+1.0
2,925,401	+				+0.6
2,925,586	+				-0.1
2,925,588	+				+0.9
2,925,588	+				-0.9
2,925,589	-				+1.3
2,925,589	-				-1.9
2,925,803	+		DDA3937_RS12840	0.19	+2.3
2,925,804	-		DDA3937_RS12840	0.19	-2.3
2,925,804	-		DDA3937_RS12840	0.19	-2.1
2,925,816	+		DDA3937_RS12840	0.20	-2.7
2,925,816	+		DDA3937_RS12840	0.20	-2.3
2,925,816	+		DDA3937_RS12840	0.20	+0.4
2,925,817	-		DDA3937_RS12840	0.20	-1.5
2,925,817	-		DDA3937_RS12840	0.20	+0.1
2,925,817	-		DDA3937_RS12840	0.20	-0.1
2,925,817	-		DDA3937_RS12840	0.20	+1.0
2,925,878	+		DDA3937_RS12840	0.23	-0.5
2,925,879	-		DDA3937_RS12840	0.23	-1.4
2,925,972	-		DDA3937_RS12840	0.27	-0.9
2,926,236	+		DDA3937_RS12840	0.39	-1.9
2,926,236	+				+0.4
2,926,237	-		DDA3937_RS12840	0.39	-0.9
2,926,238	+		DDA3937_RS12840	0.39	+0.4
2,926,239	-		DDA3937_RS12840	0.40	-1.7
2,926,260	-		DDA3937_RS12840	0.40	+1.7
2,926,394	+		DDA3937_RS12840	0.47	-2.4
2,926,394	+		DDA3937_RS12840	0.47	-1.1