Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12650

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,877,173	+		DDA3937_RS23235	0.36	-2.2
2,877,177	-		DDA3937_RS23235	0.38	+0.7
2,877,177	-		DDA3937_RS23235	0.38	-1.5
2,877,177	-		DDA3937_RS23235	0.38	-1.1
2,877,177	-		DDA3937_RS23235	0.38	+1.5
2,877,181	-		DDA3937_RS23235	0.40	-0.4
2,877,181	-		DDA3937_RS23235	0.40	+3.3
2,877,208	-		DDA3937_RS23235	0.52	-1.5
2,877,297	-				-2.5
2,877,297	-				-0.1
2,877,393	-				+0.5
2,877,855	+		DDA3937_RS12645	0.51	+0.4
2,877,855	+		DDA3937_RS12645	0.51	-0.1
2,877,873	-				-0.5
2,877,873	-				-0.5
2,877,949	+		DDA3937_RS12645	0.75	-0.5
2,877,981	+		DDA3937_RS12645	0.83	-2.4
2,878,042	+				-2.6
2,878,056	+				-1.0
2,878,079	-				-2.8
2,878,231	-				+3.8
2,878,274	-		DDA3937_RS12650	0.12	-2.0
2,878,307	+		DDA3937_RS12650	0.16	-1.8
2,878,307	+		DDA3937_RS12650	0.16	-1.5
2,878,308	-		DDA3937_RS12650	0.16	-1.2
2,878,308	-		DDA3937_RS12650	0.16	-1.0
2,878,308	-		DDA3937_RS12650	0.16	-1.8
2,878,308	-		DDA3937_RS12650	0.16	-1.5
2,878,308	-		DDA3937_RS12650	0.16	-3.3
2,878,308	-		DDA3937_RS12650	0.16	-0.1
2,878,318	+				+1.5
2,878,318	+		DDA3937_RS12650	0.18	-2.3
2,878,318	+		DDA3937_RS12650	0.18	-1.1
2,878,319	-		DDA3937_RS12650	0.18	+0.5
2,878,329	+		DDA3937_RS12650	0.19	-1.3
2,878,329	+		DDA3937_RS12650	0.19	-1.3
2,878,337	+		DDA3937_RS12650	0.20	-2.6
2,878,363	+		DDA3937_RS12650	0.23	-1.1
2,878,363	+		DDA3937_RS12650	0.23	-0.5
2,878,363	+		DDA3937_RS12650	0.23	+1.2
2,878,363	+		DDA3937_RS12650	0.23	-0.5
2,878,364	-		DDA3937_RS12650	0.23	-0.1
2,878,364	-		DDA3937_RS12650	0.23	-0.7
2,878,364	-		DDA3937_RS12650	0.23	+2.2
2,878,364	-		DDA3937_RS12650	0.23	-0.5
2,878,365	+		DDA3937_RS12650	0.23	-1.2
2,878,365	+				-0.5
2,878,365	+		DDA3937_RS12650	0.23	-2.0
2,878,365	+		DDA3937_RS12650	0.23	+0.9
2,878,365	+		DDA3937_RS12650	0.23	-1.7
2,878,365	+		DDA3937_RS12650	0.23	-1.3
2,878,365	+		DDA3937_RS12650	0.23	+0.0
2,878,366	-		DDA3937_RS12650	0.23	-2.4
2,878,366	-		DDA3937_RS12650	0.23	-1.5
2,878,408	+		DDA3937_RS12650	0.28	+0.2
2,878,409	-		DDA3937_RS12650	0.28	-0.5
2,878,425	+		DDA3937_RS12650	0.30	-1.3
2,878,454	+		DDA3937_RS12650	0.34	-0.3
2,878,455	-		DDA3937_RS12650	0.34	-0.5
2,878,510	+		DDA3937_RS12650	0.40	-2.3
2,878,511	-		DDA3937_RS12650	0.41	+0.8
2,878,556	+		DDA3937_RS12650	0.46	-0.5
2,878,559	+		DDA3937_RS12650	0.46	+1.3
2,878,560	-		DDA3937_RS12650	0.46	+1.7
2,878,560	-		DDA3937_RS12650	0.46	-1.3
2,878,560	-		DDA3937_RS12650	0.46	-0.3
2,878,666	+		DDA3937_RS12650	0.59	+0.2
2,878,666	+		DDA3937_RS12650	0.59	+1.3
2,878,666	+		DDA3937_RS12650	0.59	-1.1
2,878,666	+		DDA3937_RS12650	0.59	-0.9
2,878,674	-		DDA3937_RS12650	0.60	+1.3
2,878,803	+		DDA3937_RS12650	0.75	-0.1
2,878,803	+		DDA3937_RS12650	0.75	+1.4
2,878,803	+		DDA3937_RS12650	0.75	+1.5
2,878,804	-		DDA3937_RS12650	0.75	-0.1
2,878,804	-		DDA3937_RS12650	0.75	-0.1
2,878,804	-		DDA3937_RS12650	0.75	-1.8
2,878,804	-		DDA3937_RS12650	0.75	+0.5
2,878,804	-		DDA3937_RS12650	0.75	+0.8
2,878,805	+		DDA3937_RS12650	0.76	+1.3
2,878,805	+		DDA3937_RS12650	0.76	-2.0
2,878,805	+		DDA3937_RS12650	0.76	+1.8
2,878,806	-		DDA3937_RS12650	0.76	-0.8
2,878,806	-				+0.5
2,878,806	-		DDA3937_RS12650	0.76	-2.2
2,878,806	-		DDA3937_RS12650	0.76	+0.4
2,878,822	-		DDA3937_RS12650	0.78	-1.1
2,878,827	-		DDA3937_RS12650	0.78	-1.0
2,878,828	+		DDA3937_RS12650	0.78	+0.5
2,878,829	-		DDA3937_RS12650	0.78	+0.7
2,878,829	-				-0.1
2,878,866	+		DDA3937_RS12650	0.83	+1.9
2,878,866	+		DDA3937_RS12650	0.83	+1.4
2,878,866	+		DDA3937_RS12650	0.83	+2.0
2,878,867	-		DDA3937_RS12650	0.83	-0.5
2,878,867	-		DDA3937_RS12650	0.83	-0.0
2,878,867	-		DDA3937_RS12650	0.83	-0.9
2,878,871	+		DDA3937_RS12650	0.83	-2.3
2,878,871	+		DDA3937_RS12650	0.83	-0.5
2,878,872	-		DDA3937_RS12650	0.84	-3.0
2,878,872	-		DDA3937_RS12650	0.84	-0.8
2,878,872	-		DDA3937_RS12650	0.84	+1.5
2,878,970	+				+0.0
2,879,016	+				-0.1
2,879,046	+				-0.5
2,879,153	-				-2.1
2,879,167	+				+1.0
2,879,167	+				-2.2
2,879,167	+				+0.6
2,879,167	+				+0.9
2,879,168	-				-2.3
2,879,168	-				-0.1
2,879,208	-				-2.1
2,879,208	-				-0.1
2,879,208	-				+1.6
2,879,228	-				+0.3
2,879,228	-				+0.8
2,879,239	+				-2.3
2,879,293	+		DDA3937_RS12655	0.14	-0.5
2,879,295	+		DDA3937_RS12655	0.14	-0.1
2,879,296	-		DDA3937_RS12655	0.14	-2.8
2,879,319	-		DDA3937_RS12655	0.17	-0.8
2,879,326	-		DDA3937_RS12655	0.17	+0.6
2,879,340	+		DDA3937_RS12655	0.19	-0.6
2,879,340	+		DDA3937_RS12655	0.19	+1.3
2,879,342	+				-1.1
2,879,398	+		DDA3937_RS12655	0.25	+1.2
2,879,399	-		DDA3937_RS12655	0.25	-2.6
2,879,417	+		DDA3937_RS12655	0.27	-1.8
2,879,427	-		DDA3937_RS12655	0.28	-0.5
2,879,483	+		DDA3937_RS12655	0.35	-0.1
2,879,484	-		DDA3937_RS12655	0.35	-1.3
2,879,555	+		DDA3937_RS12655	0.42	-0.4
2,879,555	+		DDA3937_RS12655	0.42	+1.1
2,879,555	+		DDA3937_RS12655	0.42	+1.5
2,879,556	-		DDA3937_RS12655	0.42	-2.5
2,879,556	-		DDA3937_RS12655	0.42	+0.9
2,879,562	-		DDA3937_RS12655	0.43	-2.0
2,879,562	-		DDA3937_RS12655	0.43	+1.3
2,879,579	+				-0.1
2,879,607	-		DDA3937_RS12655	0.48	+0.9
2,879,607	-		DDA3937_RS12655	0.48	-2.1
2,879,696	+		DDA3937_RS12655	0.58	+0.6
2,879,744	+		DDA3937_RS12655	0.63	-3.1
2,879,745	-		DDA3937_RS12655	0.63	-2.0
2,879,745	-		DDA3937_RS12655	0.63	+0.9
2,879,748	-		DDA3937_RS12655	0.63	-0.5
2,879,748	-		DDA3937_RS12655	0.63	+2.1
2,879,750	-		DDA3937_RS12655	0.64	+1.7
2,879,750	-		DDA3937_RS12655	0.64	+1.5
2,879,756	+		DDA3937_RS12655	0.64	+1.2
2,879,757	-		DDA3937_RS12655	0.64	-2.0
2,879,804	+		DDA3937_RS12655	0.69	+0.4
2,879,804	+		DDA3937_RS12655	0.69	-2.2
2,879,805	-		DDA3937_RS12655	0.70	-1.1
2,879,805	-		DDA3937_RS12655	0.70	-0.1
2,879,809	+		DDA3937_RS12655	0.70	-4.6
2,879,810	-		DDA3937_RS12655	0.70	+0.9
2,879,810	-		DDA3937_RS12655	0.70	-2.7
2,879,810	-		DDA3937_RS12655	0.70	-0.8
2,879,810	-		DDA3937_RS12655	0.70	+0.5
2,879,810	-		DDA3937_RS12655	0.70	+0.5
2,879,810	-		DDA3937_RS12655	0.70	-1.1
2,879,813	+		DDA3937_RS12655	0.70	+0.7
2,879,837	+		DDA3937_RS12655	0.73	+0.6
2,879,838	-		DDA3937_RS12655	0.73	-0.2
2,879,843	+		DDA3937_RS12655	0.74	-0.8
2,879,846	+		DDA3937_RS12655	0.74	-1.8
2,879,847	-		DDA3937_RS12655	0.74	-2.0
2,879,847	-		DDA3937_RS12655	0.74	+0.5
2,879,847	-		DDA3937_RS12655	0.74	-1.1
2,879,847	-		DDA3937_RS12655	0.74	-1.1
2,879,889	+		DDA3937_RS12655	0.79	+0.7
2,879,889	+		DDA3937_RS12655	0.79	+0.9
2,879,897	+		DDA3937_RS12655	0.80	+1.1
2,879,898	-		DDA3937_RS12655	0.80	-1.8
2,879,902	+		DDA3937_RS12655	0.80	-0.1
2,879,902	+		DDA3937_RS12655	0.80	-0.8
2,879,902	+		DDA3937_RS12655	0.80	-0.8
2,879,970	-		DDA3937_RS12655	0.88	-0.5