Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12585

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,863,836	-		DDA3937_RS12575	0.62	-1.0
2,863,859	+		DDA3937_RS12575	0.66	-1.8
2,863,887	-		DDA3937_RS12575	0.70	-1.7
2,863,887	-		DDA3937_RS12575	0.70	+1.2
2,864,086	-				+0.5
2,864,189	+				+1.6
2,864,190	-				+0.6
2,864,190	-				+0.9
2,864,190	-				+3.6
2,864,190	-				-1.1
2,864,254	+				-1.3
2,864,473	+		DDA3937_RS12580	0.72	-1.0
2,864,474	-		DDA3937_RS12580	0.72	-0.1
2,864,476	+		DDA3937_RS12580	0.73	-0.2
2,864,476	+		DDA3937_RS12580	0.73	-1.3
2,864,476	+		DDA3937_RS12580	0.73	-0.2
2,864,477	-		DDA3937_RS12580	0.73	+1.8
2,864,477	-		DDA3937_RS12580	0.73	-2.9
2,864,477	-		DDA3937_RS12580	0.73	-0.7
2,864,561	+				+1.2
2,864,561	+				-1.7
2,864,561	+				+1.0
2,864,561	+				-0.1
2,864,562	-				+1.8
2,864,575	+				+0.0
2,864,576	-				-0.0
2,864,576	-				-1.7
2,864,576	-				-0.5
2,864,626	+				-1.7
2,864,627	-				-1.1
2,864,627	-				-0.8
2,864,645	+				-1.6
2,864,645	+				+1.9
2,864,646	-				-0.8
2,864,646	-				+0.9
2,864,667	-				+0.3
2,864,685	-				-0.8
2,864,685	-				+0.5
2,864,794	-				+0.5
2,864,905	+		DDA3937_RS12585	0.22	-2.5
2,864,905	+		DDA3937_RS12585	0.22	-0.8
2,864,906	-		DDA3937_RS12585	0.22	-2.2
2,864,906	-		DDA3937_RS12585	0.22	-0.8
2,864,906	-		DDA3937_RS12585	0.22	+1.8
2,864,906	-		DDA3937_RS12585	0.22	-1.8
2,865,044	+		DDA3937_RS12585	0.34	-0.1
2,865,084	-		DDA3937_RS12585	0.38	-2.2
2,865,154	-		DDA3937_RS12585	0.44	-1.9
2,865,158	+		DDA3937_RS12585	0.44	-3.5
2,865,159	-		DDA3937_RS12585	0.44	-1.1
2,865,201	+		DDA3937_RS12585	0.48	-0.8
2,865,201	+		DDA3937_RS12585	0.48	-0.5
2,865,202	-		DDA3937_RS12585	0.48	-1.1
2,865,202	-		DDA3937_RS12585	0.48	+1.0
2,865,202	-		DDA3937_RS12585	0.48	-0.7
2,865,202	-		DDA3937_RS12585	0.48	+0.8
2,865,222	-		DDA3937_RS12585	0.50	+0.4
2,865,671	+				+2.5
2,865,671	+				+0.9
2,865,672	-				-1.8
2,865,759	+				-2.0
2,865,759	+				+0.1
2,865,759	+				+0.9
2,865,759	+				-1.0
2,865,759	+				-0.7
2,865,760	-				-1.8
2,865,760	-				-0.8
2,865,760	-				-1.7
2,865,760	-				-1.0
2,865,760	-				+0.8
2,865,760	-				-1.7
2,865,760	-				-0.6
2,865,760	-				-0.8
2,865,760	-				+0.2
2,865,760	-				-2.0
2,865,760	-				-1.1
2,865,761	+				-0.3
2,865,761	+				+1.5
2,865,761	+				-1.5
2,865,761	+				-0.7
2,865,761	+				+0.5
2,865,761	+				-1.0
2,865,761	+				-2.2
2,865,761	+				-0.2
2,865,761	+				-0.1
2,865,762	-				-2.4
2,865,762	-				+2.0
2,865,762	-				-0.8
2,865,762	-				+1.2
2,865,762	-				-0.2
2,865,762	-				+1.7
2,865,783	+				+0.3
2,865,819	+				-1.9
2,865,819	+				-1.3
2,865,819	+				-1.3
2,865,820	-				-0.2
2,865,820	-				-2.4
2,865,820	-				+2.5
2,865,820	-				+0.1
2,865,820	-				+1.1
2,865,820	-				+1.5
2,865,857	+				+0.6
2,865,857	+				-1.1
2,865,859	+				-0.2
2,865,860	-				+2.2
2,865,868	+				-0.5
2,865,869	-				-1.8
2,865,903	+				+1.1
2,865,908	-				-2.9
2,865,963	+				-0.4
2,865,963	+				+1.0
2,865,963	+				-1.5
2,865,963	+				+0.7
2,865,963	+				-0.2
2,865,963	+				-1.1
2,865,964	-				-1.3
2,865,964	-				+1.0
2,865,964	-				+0.8
2,865,964	-				-0.1
2,865,975	-				+1.0
2,865,994	+				-0.3
2,865,995	-				-1.3
2,866,005	+				-2.7
2,866,023	+				-2.8
2,866,023	+				+0.5
2,866,023	+				+0.7
2,866,023	+				-0.5
2,866,059	+				+1.8
2,866,060	-				-2.3
2,866,076	+				+0.1
2,866,104	+				+0.8
2,866,104	+				+1.3
2,866,104	+				-3.1
2,866,104	+				+0.3
2,866,104	+				+0.6
2,866,104	+				+1.2
2,866,104	+				-3.6
2,866,104	+				-1.1
2,866,104	+				-2.2
2,866,105	-				-1.1
2,866,105	-				+0.7
2,866,105	-				-0.8
2,866,105	-				-1.5
2,866,105	-				-0.0
2,866,105	-				-0.8
2,866,105	-				-0.6
2,866,106	+				-2.5
2,866,106	+				+0.7
2,866,106	+				+0.2
2,866,107	-				-0.8
2,866,107	-				-2.1
2,866,121	+				-1.4
2,866,151	-				-1.3
2,866,158	-				-0.1
2,866,181	+		DDA3937_RS12590	0.13	-0.6
2,866,207	-		DDA3937_RS12590	0.18	+0.2
2,866,207	-				-0.5
2,866,240	+		DDA3937_RS12590	0.25	-1.7
2,866,240	+		DDA3937_RS12590	0.25	-1.9
2,866,298	+		DDA3937_RS12590	0.38	-0.7
2,866,298	+		DDA3937_RS12590	0.38	-1.1
2,866,298	+		DDA3937_RS12590	0.38	+0.5
2,866,298	+		DDA3937_RS12590	0.38	+0.1
2,866,298	+		DDA3937_RS12590	0.38	+0.4
2,866,298	+		DDA3937_RS12590	0.38	-1.1
2,866,298	+		DDA3937_RS12590	0.38	-1.3
2,866,299	-		DDA3937_RS12590	0.38	-1.8
2,866,299	-		DDA3937_RS12590	0.38	-1.8
2,866,346	+		DDA3937_RS12590	0.48	-2.6
2,866,349	+		DDA3937_RS12590	0.49	+0.8
2,866,349	+				-1.1
2,866,350	-		DDA3937_RS12590	0.49	+0.5
2,866,547	+				+0.5
2,866,548	-				+1.8
2,866,599	-				-1.0
2,866,630	+				+0.9
2,866,630	+				-2.2
2,866,653	-				+0.3
2,866,653	-				+1.5
2,866,655	-				+1.1
2,866,655	-				+1.7
2,866,655	-				+1.4
2,866,662	+				-1.7
2,866,663	-				+1.6
2,866,678	+				+0.4
2,866,678	+				-2.1
2,866,678	+				+4.3
2,866,678	+				+3.0
2,866,678	+				-0.5
2,866,679	-				-0.3
2,866,679	-				-3.2
2,866,679	-				-0.6
2,866,679	-				-0.1
2,866,679	-				-2.0
2,866,679	-				-2.7
2,866,679	-				-0.8
2,866,680	+				-1.5
2,866,680	+				-1.1
2,866,680	+				-2.9
2,866,680	+				-2.5
2,866,680	+				-2.2
2,866,680	+				+0.9
2,866,680	+				+0.9
2,866,680	+				+2.2
2,866,680	+				-3.6
2,866,680	+				-2.3
2,866,681	-				+2.0
2,866,681	-				-1.3
2,866,681	-				-2.5
2,866,681	-				+1.9
2,866,681	-				+1.8
2,866,681	-				-2.2
2,866,681	-				+2.8
2,866,682	+				-0.7
2,866,682	+				-1.8
2,866,682	+				+2.1
2,866,682	+				-1.8
2,866,683	-				-0.4
2,866,683	-				-0.1
2,866,683	-				-2.2
2,866,683	-				+0.5
2,866,683	-				-0.8
2,866,683	-				-0.5
2,866,683	-				+1.9
2,866,691	+				+0.5
2,866,691	+				+1.7
2,866,691	+				-1.6
2,866,692	-				-2.3
2,866,720	-				+0.8
2,866,734	+				+2.1
2,866,735	-				+0.3
2,866,749	+				-0.1
2,866,749	+				-1.2