Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12380

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,816,014	+				-0.4
2,816,015	-				-1.0
2,816,045	+				-2.0
2,816,045	+				-0.7
2,816,045	+				-1.6
2,816,045	+				-1.3
2,816,046	-				-1.3
2,816,046	-				-1.3
2,816,051	+				-3.9
2,816,051	+				+2.9
2,816,051	+				-0.5
2,816,052	-				-0.9
2,816,052	-				-0.8
2,816,052	-				-0.8
2,816,089	+				+2.3
2,816,090	-				+0.5
2,816,096	+				-1.5
2,816,103	-				+0.1
2,816,161	+				-0.1
2,816,161	+				+0.8
2,816,162	-				-0.1
2,816,162	-				-2.5
2,816,162	-				-0.8
2,816,168	+				+0.2
2,816,169	-				-2.4
2,816,243	-				-3.4
2,816,302	-				+0.1
2,816,322	+				-1.1
2,816,323	-				-2.1
2,816,323	-				-0.8
2,816,323	-				-1.7
2,816,323	-				+0.6
2,816,325	+				-0.9
2,816,325	+				-0.1
2,816,326	-				-0.8
2,816,326	-				+2.6
2,816,326	-				-0.4
2,816,329	+				-1.7
2,816,330	-				+1.2
2,816,330	-				+1.5
2,816,330	-				+1.3
2,816,330	-				+3.1
2,816,376	+				-0.8
2,816,376	+				+1.1
2,816,376	+				-0.8
2,816,376	+				-0.5
2,816,376	+				-1.1
2,816,376	+				-0.7
2,816,377	-				-1.1
2,816,377	-				-1.8
2,816,377	-				-2.7
2,816,437	+				+1.5
2,816,437	+				-2.1
2,816,438	-				-0.2
2,816,438	-				+0.3
2,816,438	-				-1.8
2,816,438	-				-2.3
2,816,495	+		DDA3937_RS12375	0.15	-1.7
2,816,495	+		DDA3937_RS12375	0.15	-2.6
2,816,496	-		DDA3937_RS12375	0.15	+1.0
2,816,496	-		DDA3937_RS12375	0.15	-0.3
2,816,496	-		DDA3937_RS12375	0.15	-2.4
2,816,500	-		DDA3937_RS12375	0.16	+2.7
2,816,518	+		DDA3937_RS12375	0.20	+0.1
2,816,620	-		DDA3937_RS12375	0.45	-0.8
2,816,627	-		DDA3937_RS12375	0.47	+0.9
2,816,627	-		DDA3937_RS12375	0.47	+1.8
2,816,627	-		DDA3937_RS12375	0.47	-2.1
2,816,627	-		DDA3937_RS12375	0.47	-0.1
2,816,627	-		DDA3937_RS12375	0.47	+3.0
2,816,665	+		DDA3937_RS12375	0.57	-0.7
2,816,665	+		DDA3937_RS12375	0.57	+2.6
2,816,737	+		DDA3937_RS12375	0.74	-1.5
2,816,737	+		DDA3937_RS12375	0.74	-2.2
2,816,737	+		DDA3937_RS12375	0.74	-1.1
2,816,737	+		DDA3937_RS12375	0.74	-1.3
2,816,737	+		DDA3937_RS12375	0.74	+0.3
2,816,737	+		DDA3937_RS12375	0.74	-2.1
2,816,737	+		DDA3937_RS12375	0.74	+0.9
2,816,738	-		DDA3937_RS12375	0.75	+0.1
2,816,738	-		DDA3937_RS12375	0.75	-2.1
2,816,738	-		DDA3937_RS12375	0.75	+0.9
2,816,738	-		DDA3937_RS12375	0.75	-0.7
2,816,738	-		DDA3937_RS12375	0.75	+1.0
2,816,738	-		DDA3937_RS12375	0.75	+1.0
2,816,738	-		DDA3937_RS12375	0.75	-0.2
2,816,738	-		DDA3937_RS12375	0.75	-1.7
2,816,738	-		DDA3937_RS12375	0.75	+1.5
2,816,738	-		DDA3937_RS12375	0.75	-2.4
2,816,738	-		DDA3937_RS12375	0.75	-0.3
2,816,745	+		DDA3937_RS12375	0.76	+0.8
2,816,745	+		DDA3937_RS12375	0.76	+1.2
2,816,746	-		DDA3937_RS12375	0.77	-0.8
2,816,785	+		DDA3937_RS12375	0.86	-0.8
2,816,785	+		DDA3937_RS12375	0.86	-0.8
2,816,786	-		DDA3937_RS12375	0.86	+1.5
2,816,786	-		DDA3937_RS12375	0.86	-0.8
2,816,786	-		DDA3937_RS12375	0.86	-0.1
2,816,786	-		DDA3937_RS12375	0.86	-0.4
2,816,825	+				+0.0
2,816,825	+				+1.5
2,816,825	+				+0.1
2,816,825	+				+1.5
2,816,826	-				-0.1
2,816,826	-				-1.8
2,816,826	-				-1.5
2,816,826	-				-1.1
2,816,834	+				-1.5
2,816,834	+				-1.5
2,816,835	-				+0.5
2,816,842	-				+1.6
2,816,860	+				-0.5
2,816,860	+				-1.8
2,816,861	-				-2.0
2,816,861	-				-1.5
2,816,880	+				-1.8
2,816,881	-				-2.4
2,816,910	+				-1.4
2,816,910	+				-0.7
2,816,911	-				+0.9
2,816,911	-				+2.8
2,817,018	+				+1.2
2,817,019	-				+1.0
2,817,040	+				+1.5
2,817,041	-				-0.5
2,817,041	-				+0.8
2,817,344	-		DDA3937_RS12380	0.31	+1.2
2,817,344	-		DDA3937_RS12380	0.31	+1.5
2,817,344	-		DDA3937_RS12380	0.31	-1.0
2,817,360	-		DDA3937_RS12380	0.32	-2.1
2,817,361	+		DDA3937_RS12380	0.32	+0.5
2,817,361	+		DDA3937_RS12380	0.32	-2.7
2,817,361	+		DDA3937_RS12380	0.32	-0.1
2,817,361	+		DDA3937_RS12380	0.32	-1.5
2,817,361	+				+2.5
2,817,361	+		DDA3937_RS12380	0.32	+1.7
2,817,361	+		DDA3937_RS12380	0.32	+0.4
2,817,362	-		DDA3937_RS12380	0.32	-0.4
2,817,396	+		DDA3937_RS12380	0.35	-0.8
2,817,396	+		DDA3937_RS12380	0.35	+0.9
2,817,449	+		DDA3937_RS12380	0.40	-2.5
2,817,449	+		DDA3937_RS12380	0.40	-1.1
2,817,449	+		DDA3937_RS12380	0.40	+0.5
2,817,573	-		DDA3937_RS12380	0.51	-0.5
2,817,756	+		DDA3937_RS12380	0.66	+1.5
2,817,757	-		DDA3937_RS12380	0.66	+1.8
2,817,815	+		DDA3937_RS12380	0.72	+0.8
2,817,816	-		DDA3937_RS12380	0.72	-0.7
2,818,007	-		DDA3937_RS12380	0.88	+0.6
2,818,007	-		DDA3937_RS12380	0.88	-3.0
2,818,028	+				-0.4
2,818,028	+				+1.1
2,818,029	-				-0.0
2,818,029	-				-0.1
2,818,029	-				-0.5
2,818,029	-				+1.5
2,818,029	-				+1.7
2,818,029	-				-0.6
2,818,095	-				+1.4
2,818,095	-				+1.5
2,818,210	-				+0.5
2,818,210	-				-0.4
2,818,210	-				+3.5
2,818,238	-				+0.9
2,818,244	-				-0.7
2,818,244	-				+1.2
2,818,246	-				+3.1
2,818,255	+				+0.1
2,818,256	-				-3.6
2,818,276	+				-1.4
2,818,279	+				-1.1
2,818,279	+				+1.5
2,818,583	+		DDA3937_RS12385	0.32	+0.1
2,818,584	-		DDA3937_RS12385	0.32	+1.7
2,818,617	+		DDA3937_RS12385	0.36	+0.2
2,818,617	+		DDA3937_RS12385	0.36	+0.7
2,818,617	+		DDA3937_RS12385	0.36	-0.2
2,818,617	+		DDA3937_RS12385	0.36	-0.1
2,818,617	+		DDA3937_RS12385	0.36	-1.0
2,818,617	+		DDA3937_RS12385	0.36	-1.1
2,818,618	-		DDA3937_RS12385	0.36	-0.5
2,818,618	-		DDA3937_RS12385	0.36	+1.7
2,818,618	-		DDA3937_RS12385	0.36	+0.1
2,818,618	-		DDA3937_RS12385	0.36	-2.0
2,818,618	-		DDA3937_RS12385	0.36	-0.9
2,818,619	+		DDA3937_RS12385	0.36	-1.1
2,818,619	+		DDA3937_RS12385	0.36	+1.3
2,818,619	+		DDA3937_RS12385	0.36	-2.0
2,818,619	+		DDA3937_RS12385	0.36	+0.5
2,818,619	+		DDA3937_RS12385	0.36	-2.3
2,818,620	-		DDA3937_RS12385	0.36	+1.8
2,818,620	-		DDA3937_RS12385	0.36	-2.0
2,818,620	-		DDA3937_RS12385	0.36	+0.9
2,818,620	-		DDA3937_RS12385	0.36	+0.7
2,818,620	-		DDA3937_RS12385	0.36	+0.2
2,818,620	-		DDA3937_RS12385	0.36	-2.0
2,818,620	-		DDA3937_RS12385	0.36	-0.8
2,818,620	-		DDA3937_RS12385	0.36	-2.6
2,818,706	+		DDA3937_RS12385	0.46	-1.7
2,818,817	-		DDA3937_RS12385	0.58	-2.1
2,818,919	+		DDA3937_RS12385	0.70	+0.7
2,818,919	+		DDA3937_RS12385	0.70	+0.5
2,818,941	-		DDA3937_RS12385	0.72	-1.3
2,818,941	-		DDA3937_RS12385	0.72	+1.3
2,818,941	-		DDA3937_RS12385	0.72	+0.5
2,818,970	+		DDA3937_RS12385	0.75	+1.5
2,818,971	-		DDA3937_RS12385	0.75	+0.4
2,818,974	+		DDA3937_RS12385	0.76	-1.3
2,818,975	-		DDA3937_RS12385	0.76	-3.4
2,819,026	-		DDA3937_RS12385	0.82	+0.9
2,819,026	-		DDA3937_RS12385	0.82	-1.7
2,819,053	-		DDA3937_RS12385	0.85	-0.5
2,819,053	-		DDA3937_RS12385	0.85	+0.7
2,819,053	-		DDA3937_RS12385	0.85	+2.0
2,819,053	-		DDA3937_RS12385	0.85	-3.0
2,819,070	+		DDA3937_RS12385	0.86	-1.0
2,819,091	+		DDA3937_RS12385	0.89	+2.6
2,819,091	+		DDA3937_RS12385	0.89	-1.8
2,819,091	+		DDA3937_RS12385	0.89	-1.8
2,819,092	-		DDA3937_RS12385	0.89	+3.4
2,819,119	+				-2.1
2,819,119	+				+0.8
2,819,122	+				-2.2