Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12305

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,798,015	+		DDA3937_RS12295	0.70	-1.5
2,798,016	-		DDA3937_RS12295	0.70	+0.5
2,798,016	-		DDA3937_RS12295	0.70	+1.3
2,798,100	+		DDA3937_RS12295	0.78	-1.5
2,798,186	+		DDA3937_RS12295	0.87	-0.2
2,798,187	-		DDA3937_RS12295	0.87	+1.5
2,798,264	+				+0.1
2,798,264	+				-2.8
2,798,265	-				-1.7
2,798,265	-				-0.8
2,798,268	-				-0.5
2,798,268	-				-2.0
2,798,297	+				-2.0
2,798,353	+				+1.5
2,798,363	+				-2.2
2,798,363	+				+0.8
2,798,490	+		DDA3937_RS12300	0.46	+2.1
2,798,491	-		DDA3937_RS12300	0.46	+1.3
2,798,634	+				+0.5
2,798,635	-				+0.9
2,798,635	-				-1.5
2,798,668	-				-0.8
2,798,668	-				-0.5
2,798,669	+				-1.5
2,798,670	-				+0.6
2,798,706	-				-1.5
2,798,715	+				+0.5
2,798,716	-				-0.1
2,798,721	+				+2.0
2,798,721	+				+1.3
2,798,721	+				+1.5
2,798,721	+				-1.3
2,798,721	+				-1.1
2,798,722	-				+1.5
2,798,725	+				-0.9
2,798,726	-				-2.6
2,798,726	-				-1.5
2,798,726	-				-0.2
2,798,726	-				-1.7
2,798,730	+				-0.1
2,798,731	-				+1.3
2,798,731	-				-0.0
2,798,731	-				-0.8
2,798,739	-				+0.1
2,798,914	-				+0.4
2,798,950	+				-0.8
2,798,951	-				-1.8
2,799,007	+				-1.5
2,799,088	+				-2.1
2,799,088	+				+0.9
2,799,088	+				-1.8
2,799,088	+				-1.8
2,799,088	+				-3.3
2,799,089	-				+0.5
2,799,089	-				+1.5
2,799,089	-				-0.8
2,799,091	+				+2.5
2,799,092	-				+3.9
2,799,130	-				-2.1
2,799,161	-		DDA3937_RS12305	0.10	-1.3
2,799,161	-		DDA3937_RS12305	0.10	-0.5
2,799,187	+		DDA3937_RS12305	0.12	+2.2
2,799,187	+		DDA3937_RS12305	0.12	-1.6
2,799,188	-		DDA3937_RS12305	0.12	-2.0
2,799,205	+		DDA3937_RS12305	0.13	+0.5
2,799,205	+		DDA3937_RS12305	0.13	+1.8
2,799,250	+		DDA3937_RS12305	0.15	-2.8
2,799,286	-		DDA3937_RS12305	0.17	+0.1
2,799,435	+		DDA3937_RS12305	0.24	+2.7
2,799,436	-		DDA3937_RS12305	0.24	+2.0
2,799,540	+		DDA3937_RS12305	0.30	-0.1
2,799,540	+		DDA3937_RS12305	0.30	+0.3
2,799,540	+		DDA3937_RS12305	0.30	-0.6
2,799,540	+		DDA3937_RS12305	0.30	-1.1
2,799,540	+		DDA3937_RS12305	0.30	+2.1
2,799,541	-		DDA3937_RS12305	0.30	+1.0
2,799,541	-		DDA3937_RS12305	0.30	+1.7
2,799,541	-		DDA3937_RS12305	0.30	+0.5
2,799,541	-		DDA3937_RS12305	0.30	-0.2
2,799,688	+		DDA3937_RS12305	0.37	-1.5
2,799,688	+		DDA3937_RS12305	0.37	-1.3
2,799,689	-		DDA3937_RS12305	0.37	+1.1
2,799,689	-		DDA3937_RS12305	0.37	-2.3
2,799,689	-		DDA3937_RS12305	0.37	-2.0
2,799,868	+				+0.2
2,799,868	+		DDA3937_RS12305	0.46	+0.3
2,799,868	+		DDA3937_RS12305	0.46	-1.7
2,799,868	+		DDA3937_RS12305	0.46	+0.9
2,799,869	-		DDA3937_RS12305	0.46	+0.2
2,799,869	-				+0.5
2,799,869	-		DDA3937_RS12305	0.46	+1.0
2,799,869	-		DDA3937_RS12305	0.46	-1.3
2,799,869	-		DDA3937_RS12305	0.46	-2.2
2,799,870	+		DDA3937_RS12305	0.47	-0.1
2,799,870	+		DDA3937_RS12305	0.47	-0.8
2,799,871	-		DDA3937_RS12305	0.47	+0.8
2,799,871	-		DDA3937_RS12305	0.47	+0.5
2,799,871	-		DDA3937_RS12305	0.47	-1.7
2,799,871	-		DDA3937_RS12305	0.47	+2.7
2,799,886	-		DDA3937_RS12305	0.47	+1.2
2,799,924	+		DDA3937_RS12305	0.49	-0.6
2,799,924	+		DDA3937_RS12305	0.49	-3.0
2,800,279	-		DDA3937_RS12305	0.67	-0.1
2,800,439	+		DDA3937_RS12305	0.75	-0.3
2,800,439	+		DDA3937_RS12305	0.75	-1.0
2,800,440	-		DDA3937_RS12305	0.76	-0.5
2,800,440	-		DDA3937_RS12305	0.76	-1.7
2,800,440	-		DDA3937_RS12305	0.76	+0.7
2,800,443	+		DDA3937_RS12305	0.76	-1.8
2,800,443	+				-0.1
2,800,443	+		DDA3937_RS12305	0.76	-0.5
2,800,443	+		DDA3937_RS12305	0.76	+0.5
2,800,444	-		DDA3937_RS12305	0.76	-2.2
2,800,749	-				+0.6
2,800,767	-				-0.5
2,800,767	-				+1.4
2,800,881	+				+1.5
2,800,921	+				+0.5
2,800,960	+				-0.1
2,800,960	+				+0.1
2,800,989	-				-2.3
2,801,014	+				-1.7
2,801,023	+				-0.3
2,801,024	-				-2.8
2,801,024	-				+1.1
2,801,025	+				-0.6
2,801,025	+				-1.1
2,801,026	-				-1.6
2,801,102	+		DDA3937_RS12310	0.11	-1.6
2,801,102	+		DDA3937_RS12310	0.11	-0.3
2,801,102	+		DDA3937_RS12310	0.11	-1.1
2,801,102	+		DDA3937_RS12310	0.11	-0.4
2,801,103	-		DDA3937_RS12310	0.11	+0.3
2,801,103	-		DDA3937_RS12310	0.11	-1.0
2,801,105	+		DDA3937_RS12310	0.12	-3.3
2,801,105	+		DDA3937_RS12310	0.12	-0.5
2,801,105	+		DDA3937_RS12310	0.12	-0.8
2,801,106	-		DDA3937_RS12310	0.12	+0.9
2,801,106	-		DDA3937_RS12310	0.12	-1.5
2,801,106	-		DDA3937_RS12310	0.12	+1.1
2,801,106	-		DDA3937_RS12310	0.12	+0.5
2,801,106	-		DDA3937_RS12310	0.12	+0.6
2,801,145	+		DDA3937_RS12310	0.20	-0.0
2,801,156	+		DDA3937_RS12310	0.22	+0.5
2,801,201	+		DDA3937_RS12310	0.31	+2.5
2,801,201	+		DDA3937_RS12310	0.31	+1.5
2,801,201	+		DDA3937_RS12310	0.31	-0.1
2,801,201	+		DDA3937_RS12310	0.31	-0.1
2,801,201	+				-0.1
2,801,202	-		DDA3937_RS12310	0.31	-1.1
2,801,242	+		DDA3937_RS12310	0.39	-0.3
2,801,258	+		DDA3937_RS12310	0.43	-0.5
2,801,260	+		DDA3937_RS12310	0.43	-0.8
2,801,260	+		DDA3937_RS12310	0.43	+1.5
2,801,260	+		DDA3937_RS12310	0.43	+0.7
2,801,260	+		DDA3937_RS12310	0.43	+0.5
2,801,261	-		DDA3937_RS12310	0.43	-0.8
2,801,261	-		DDA3937_RS12310	0.43	-2.2
2,801,261	-		DDA3937_RS12310	0.43	+2.3
2,801,261	-		DDA3937_RS12310	0.43	+0.7
2,801,261	-		DDA3937_RS12310	0.43	+0.7
2,801,261	-		DDA3937_RS12310	0.43	+2.6
2,801,261	-		DDA3937_RS12310	0.43	+1.1
2,801,264	+		DDA3937_RS12310	0.44	-1.9
2,801,264	+		DDA3937_RS12310	0.44	+0.2
2,801,264	+		DDA3937_RS12310	0.44	-2.4
2,801,265	-		DDA3937_RS12310	0.44	-2.3
2,801,265	-		DDA3937_RS12310	0.44	+1.3
2,801,304	+		DDA3937_RS12310	0.52	-0.5
2,801,305	-		DDA3937_RS12310	0.52	+0.6
2,801,331	-		DDA3937_RS12310	0.57	-2.6
2,801,331	-		DDA3937_RS12310	0.57	+0.5
2,801,332	+		DDA3937_RS12310	0.57	+1.6
2,801,332	+		DDA3937_RS12310	0.57	+0.5
2,801,332	+		DDA3937_RS12310	0.57	-2.6
2,801,333	-		DDA3937_RS12310	0.58	+1.4
2,801,333	-		DDA3937_RS12310	0.58	+0.3
2,801,333	-		DDA3937_RS12310	0.58	+1.9
2,801,333	-		DDA3937_RS12310	0.58	-3.4
2,801,333	-		DDA3937_RS12310	0.58	-1.3
2,801,333	-		DDA3937_RS12310	0.58	-0.8
2,801,333	-		DDA3937_RS12310	0.58	+1.2
2,801,333	-		DDA3937_RS12310	0.58	-1.6
2,801,333	-		DDA3937_RS12310	0.58	+0.0
2,801,333	-		DDA3937_RS12310	0.58	+0.2
2,801,333	-		DDA3937_RS12310	0.58	-1.5
2,801,378	-		DDA3937_RS12310	0.67	-1.4
2,801,399	+		DDA3937_RS12310	0.71	+1.2
2,801,400	-		DDA3937_RS12310	0.71	-0.1
2,801,400	-		DDA3937_RS12310	0.71	-0.8
2,801,428	+		DDA3937_RS12310	0.77	-0.5
2,801,438	-		DDA3937_RS12310	0.79	-1.3
2,801,440	+		DDA3937_RS12310	0.79	-0.5
2,801,441	-		DDA3937_RS12310	0.79	-1.3
2,801,456	+		DDA3937_RS12310	0.82	+0.8
2,801,456	+		DDA3937_RS12310	0.82	-1.3
2,801,456	+		DDA3937_RS12310	0.82	-2.2
2,801,457	-		DDA3937_RS12310	0.83	-0.1
2,801,625	+				-2.1
2,801,625	+				+0.6
2,801,625	+				-1.0
2,801,626	-				-0.7
2,801,626	-				-1.4
2,801,626	-				-2.0
2,801,626	-				+1.0
2,801,626	-				-0.4
2,801,656	+				+1.3
2,801,706	+				+0.5
2,801,706	+				-0.3
2,801,706	+				+0.5
2,801,707	-				+0.6
2,801,710	+				-0.8
2,801,788	-				-0.8
2,801,792	+				-1.1
2,801,813	-				-1.3
2,801,813	-				-0.5
2,801,813	-				-2.2
2,801,846	+				+2.6
2,801,847	-				-1.8
2,801,848	+				-0.8