Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12185

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,767,275	-		DDA3937_RS12180	0.26	-1.8
2,767,282	+		DDA3937_RS12180	0.26	+1.9
2,767,316	+		DDA3937_RS12180	0.29	-1.5
2,767,316	+		DDA3937_RS12180	0.29	-1.3
2,767,316	+		DDA3937_RS12180	0.29	-0.5
2,767,316	+		DDA3937_RS12180	0.29	-0.1
2,767,317	-		DDA3937_RS12180	0.29	-0.8
2,767,319	+		DDA3937_RS12180	0.29	+2.0
2,767,424	+		DDA3937_RS12180	0.37	-2.0
2,767,471	+		DDA3937_RS12180	0.41	-0.1
2,767,471	+		DDA3937_RS12180	0.41	-0.5
2,767,472	-		DDA3937_RS12180	0.41	-0.1
2,767,473	+		DDA3937_RS12180	0.41	+0.4
2,767,473	+		DDA3937_RS12180	0.41	+2.5
2,767,473	+		DDA3937_RS12180	0.41	-0.1
2,767,473	+		DDA3937_RS12180	0.41	-1.1
2,767,474	-		DDA3937_RS12180	0.41	+0.9
2,767,474	-		DDA3937_RS12180	0.41	+1.5
2,767,474	-		DDA3937_RS12180	0.41	-1.3
2,767,474	-				+1.9
2,767,475	+		DDA3937_RS12180	0.41	+2.2
2,767,475	+		DDA3937_RS12180	0.41	+0.8
2,767,475	+		DDA3937_RS12180	0.41	+0.5
2,767,475	+				-0.1
2,767,475	+		DDA3937_RS12180	0.41	-1.1
2,767,476	-		DDA3937_RS12180	0.41	+0.5
2,767,476	-		DDA3937_RS12180	0.41	-0.0
2,767,476	-		DDA3937_RS12180	0.41	+0.0
2,767,476	-		DDA3937_RS12180	0.41	-1.7
2,767,476	-		DDA3937_RS12180	0.41	-1.5
2,767,476	-		DDA3937_RS12180	0.41	-0.5
2,767,582	+		DDA3937_RS12180	0.50	+1.8
2,767,608	+		DDA3937_RS12180	0.52	+0.1
2,767,614	+		DDA3937_RS12180	0.52	+0.8
2,767,615	-		DDA3937_RS12180	0.52	-1.0
2,767,615	-		DDA3937_RS12180	0.52	-0.8
2,767,640	-		DDA3937_RS12180	0.54	+0.5
2,767,651	+		DDA3937_RS12180	0.55	+0.6
2,767,652	-		DDA3937_RS12180	0.55	-0.5
2,767,652	-		DDA3937_RS12180	0.55	+0.7
2,767,758	-		DDA3937_RS12180	0.64	-0.5
2,767,885	+		DDA3937_RS12180	0.73	+0.8
2,767,885	+		DDA3937_RS12180	0.73	+1.2
2,767,885	+		DDA3937_RS12180	0.73	-0.0
2,767,886	-		DDA3937_RS12180	0.74	+0.2
2,768,123	+				+1.7
2,768,124	-				+1.4
2,768,130	-				-2.6
2,768,263	+				+2.8
2,768,321	-				-1.8
2,768,321	-				+0.2
2,768,321	-				-0.4
2,768,359	-				-1.7
2,768,363	+				+0.8
2,768,363	+				-2.4
2,768,364	-				+2.1
2,768,364	-				+1.7
2,768,364	-				-0.2
2,768,366	+				-0.5
2,768,366	+				+1.5
2,768,367	-				-0.8
2,768,367	-				+0.7
2,768,367	-				-2.1
2,768,437	-		DDA3937_RS12185	0.10	-0.3
2,768,437	-		DDA3937_RS12185	0.10	-1.1
2,768,446	+		DDA3937_RS12185	0.11	-1.5
2,768,446	+		DDA3937_RS12185	0.11	+1.5
2,768,446	+		DDA3937_RS12185	0.11	+0.1
2,768,447	-		DDA3937_RS12185	0.11	-0.0
2,768,447	-		DDA3937_RS12185	0.11	-1.3
2,768,518	-		DDA3937_RS12185	0.15	+1.1
2,768,600	+		DDA3937_RS12185	0.21	-0.5
2,768,601	-		DDA3937_RS12185	0.21	-1.0
2,768,601	-				+0.5
2,768,601	-		DDA3937_RS12185	0.21	-0.5
2,768,602	+		DDA3937_RS12185	0.21	-2.2
2,768,602	+		DDA3937_RS12185	0.21	+1.5
2,768,602	+		DDA3937_RS12185	0.21	-1.1
2,768,603	-		DDA3937_RS12185	0.21	-0.8
2,768,603	-		DDA3937_RS12185	0.21	-0.4
2,768,618	-		DDA3937_RS12185	0.22	-0.5
2,768,694	-		DDA3937_RS12185	0.26	-2.2
2,768,737	-		DDA3937_RS12185	0.29	+0.5
2,768,746	+		DDA3937_RS12185	0.30	-1.7
2,768,746	+		DDA3937_RS12185	0.30	+1.0
2,769,022	+		DDA3937_RS12185	0.47	-0.5
2,769,023	-		DDA3937_RS12185	0.47	+3.1
2,769,026	-		DDA3937_RS12185	0.47	+0.7
2,769,083	+		DDA3937_RS12185	0.51	+1.1
2,769,084	-		DDA3937_RS12185	0.51	+1.1
2,769,106	+		DDA3937_RS12185	0.52	-0.3
2,769,106	+		DDA3937_RS12185	0.52	-0.5
2,769,107	-				+2.8
2,769,216	-				+0.5
2,769,247	+		DDA3937_RS12185	0.61	-0.1
2,769,247	+		DDA3937_RS12185	0.61	-2.6
2,769,247	+		DDA3937_RS12185	0.61	+0.3
2,769,248	-		DDA3937_RS12185	0.61	+1.0
2,769,248	-		DDA3937_RS12185	0.61	+0.9
2,769,262	+		DDA3937_RS12185	0.62	-0.4
2,769,263	-		DDA3937_RS12185	0.62	+0.2
2,769,384	+		DDA3937_RS12185	0.69	+0.6
2,769,461	+		DDA3937_RS12185	0.74	-0.1
2,769,461	+		DDA3937_RS12185	0.74	+0.5
2,769,538	+		DDA3937_RS12185	0.79	-1.5
2,769,538	+		DDA3937_RS12185	0.79	+2.3
2,769,539	-		DDA3937_RS12185	0.79	-0.6
2,769,539	-		DDA3937_RS12185	0.79	+0.4
2,769,580	-		DDA3937_RS12185	0.82	+1.5
2,769,665	+		DDA3937_RS12185	0.87	+0.7
2,769,666	-		DDA3937_RS12185	0.87	-1.2
2,769,761	+				-0.2
2,769,762	-				-0.1
2,769,794	+				+1.8
2,769,794	+				-0.0
2,769,795	-				+1.3
2,769,795	-				-0.8
2,769,795	-				+0.8
2,769,795	-				+1.0
2,770,016	-				-1.3
2,770,016	-				-0.1
2,770,016	-				+2.1
2,770,016	-				+0.4
2,770,048	+				-0.5
2,770,048	+		DDA3937_RS12190	0.12	+0.3
2,770,048	+		DDA3937_RS12190	0.12	+0.1
2,770,049	-		DDA3937_RS12190	0.12	-0.8
2,770,051	+		DDA3937_RS12190	0.13	-1.8
2,770,051	+		DDA3937_RS12190	0.13	-1.6
2,770,051	+		DDA3937_RS12190	0.13	-1.4
2,770,052	-		DDA3937_RS12190	0.13	-0.1
2,770,052	-		DDA3937_RS12190	0.13	+1.2
2,770,052	-				-0.5
2,770,052	-		DDA3937_RS12190	0.13	+0.0
2,770,052	-		DDA3937_RS12190	0.13	-1.4
2,770,052	-		DDA3937_RS12190	0.13	-0.0
2,770,052	-		DDA3937_RS12190	0.13	+0.2
2,770,052	-		DDA3937_RS12190	0.13	-3.1
2,770,052	-		DDA3937_RS12190	0.13	-1.1
2,770,054	+		DDA3937_RS12190	0.13	-0.1
2,770,054	+		DDA3937_RS12190	0.13	-0.1
2,770,054	+		DDA3937_RS12190	0.13	-1.1
2,770,054	+		DDA3937_RS12190	0.13	+0.9
2,770,054	+		DDA3937_RS12190	0.13	-1.7
2,770,055	-		DDA3937_RS12190	0.13	-1.3
2,770,055	-		DDA3937_RS12190	0.13	-2.4
2,770,055	-		DDA3937_RS12190	0.13	-1.7
2,770,055	-		DDA3937_RS12190	0.13	-0.6
2,770,055	-		DDA3937_RS12190	0.13	-0.5
2,770,055	-		DDA3937_RS12190	0.13	-0.1
2,770,055	-		DDA3937_RS12190	0.13	+2.2
2,770,055	-		DDA3937_RS12190	0.13	-2.0
2,770,224	+				-0.1
2,770,225	-		DDA3937_RS12190	0.38	-1.5
2,770,229	-		DDA3937_RS12190	0.39	-0.3
2,770,229	-		DDA3937_RS12190	0.39	-1.3
2,770,330	+		DDA3937_RS12190	0.53	-0.5
2,770,362	+		DDA3937_RS12190	0.58	+1.5
2,770,362	+		DDA3937_RS12190	0.58	-2.7
2,770,386	-		DDA3937_RS12190	0.62	-0.3
2,770,386	-		DDA3937_RS12190	0.62	-0.0
2,770,386	-		DDA3937_RS12190	0.62	-0.3
2,770,425	+				+1.5
2,770,427	+		DDA3937_RS12190	0.68	-3.0
2,770,471	+		DDA3937_RS12190	0.74	+0.5
2,770,562	-		DDA3937_RS12190	0.87	-0.4
2,770,562	-		DDA3937_RS12190	0.87	-0.9
2,770,562	-		DDA3937_RS12190	0.87	-1.3
2,770,562	-		DDA3937_RS12190	0.87	-2.2
2,770,701	-				-2.8
2,770,701	-				-1.2
2,770,701	-				+1.3
2,770,737	-		DDA3937_RS12195	0.11	+1.6
2,770,738	+		DDA3937_RS12195	0.11	-0.8
2,770,738	+		DDA3937_RS12195	0.11	+1.1
2,770,738	+		DDA3937_RS12195	0.11	+2.8
2,770,738	+		DDA3937_RS12195	0.11	+1.1
2,770,739	-		DDA3937_RS12195	0.12	+0.2
2,770,739	-		DDA3937_RS12195	0.12	-1.0
2,770,739	-		DDA3937_RS12195	0.12	-1.5
2,770,739	-		DDA3937_RS12195	0.12	-3.1
2,770,739	-		DDA3937_RS12195	0.12	-0.2
2,770,739	-		DDA3937_RS12195	0.12	+0.7
2,770,739	-		DDA3937_RS12195	0.12	-1.7
2,770,739	-		DDA3937_RS12195	0.12	-1.7
2,770,739	-		DDA3937_RS12195	0.12	-2.4